Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:57:01 (485611): wrapper (7.7.26015): starting
04:57:01 (485611): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 04:57:01] Arguments: --nthreads 4
[2025-10-13 04:57:01] Threads: 4
[2025-10-13 04:57:01] Checking for CVMFS
[2025-10-13 04:57:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:57:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:57:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:57:02] 2.9.2.0 4261 1358 85080 151645 2 57 33040203 36864001 0 130560 0 1243832 99.993 47807 562 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 04:57:02] CVMFS is ok
[2025-10-13 04:57:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:57:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:57:02] Further information can be found at the LHC@home message board.
[2025-10-13 04:57:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:57:02] Checking for apptainer binary...
[2025-10-13 04:57:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:57:02] Running /usr/bin/apptainer --version
[2025-10-13 04:57:02] apptainer version 1.4.1-1.1
[2025-10-13 04:57:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:57:02] atlasA237
[2025-10-13 04:57:02] apptainer works
[2025-10-13 04:57:02] Set ATHENA_PROC_NUMBER=4
[2025-10-13 04:57:02] Set ATHENA_CORE_NUMBER=4
[2025-10-13 04:57:02] Starting ATLAS job with PandaID=6840182365
[2025-10-13 04:57:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:07:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | job 6840182365 has completed (purged errors)
[2025-10-13 06:07:21] 2025-10-13 04:06:54,966 | INFO     | overall cleanup function is called
[2025-10-13 06:07:21] 2025-10-13 04:06:55,973 | INFO     | --- collectZombieJob: --- 10, [495974]
[2025-10-13 06:07:21] 2025-10-13 04:06:55,973 | INFO     | zombie collector waiting for pid 495974
[2025-10-13 06:07:21] 2025-10-13 04:06:55,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:07:21] 2025-10-13 04:06:55,973 | INFO     | collected zombie processes
[2025-10-13 06:07:21] 2025-10-13 04:06:55,973 | INFO     | will attempt to kill all subprocesses of pid=495974
[2025-10-13 06:07:21] 2025-10-13 04:06:56,020 | INFO     | process IDs to be killed: [495974] (in reverse order)
[2025-10-13 06:07:21] 2025-10-13 04:06:56,051 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:07:21] 2025-10-13 04:06:56,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:07:21] 2025-10-13 04:06:56,053 | INFO     | did not find any defunct processes belonging to 495974
[2025-10-13 06:07:21] 2025-10-13 04:06:56,054 | INFO     | did not find any defunct processes belonging to 495974
[2025-10-13 06:07:21] 2025-10-13 04:06:56,054 | INFO     | ready for new job
[2025-10-13 06:07:21] 2025-10-13 04:06:56,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:07:21] 2025-10-13 04:06:56,055 | INFO     | ***************************************
[2025-10-13 06:07:21] 2025-10-13 04:06:56,055 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:07:21] 2025-10-13 04:06:56,055 | INFO     | ***************************************
[2025-10-13 06:07:21] 2025-10-13 04:06:56,055 | INFO     | 
[2025-10-13 06:07:21] 2025-10-13 04:06:56,055 | INFO     | architecture information:
[2025-10-13 06:07:21] 2025-10-13 04:06:56,056 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:07:21] 2025-10-13 04:06:56,068 | INFO     | cat /etc/os-release:
[2025-10-13 06:07:21] NAME="CentOS Linux"
[2025-10-13 06:07:21] VERSION="7 (Core)"
[2025-10-13 06:07:21] ID="centos"
[2025-10-13 06:07:21] ID_LIKE="rhel fedora"
[2025-10-13 06:07:21] VERSION_ID="7"
[2025-10-13 06:07:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:07:21] ANSI_COLOR="0;31"
[2025-10-13 06:07:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:07:21] HOME_URL="https://www.centos.org/"
[2025-10-13 06:07:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:07:21] 
[2025-10-13 06:07:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:07:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:07:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:07:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:07:21] 
[2025-10-13 06:07:21] 2025-10-13 04:06:56,068 | INFO     | ***************************************
[2025-10-13 06:07:21] 2025-10-13 04:06:56,572 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:07:21] 2025-10-13 04:06:56,588 | INFO     | sufficient remaining disk space (326260228096 B)
[2025-10-13 06:07:21] 2025-10-13 04:06:56,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:07:21] 2025-10-13 04:06:56,588 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:07:21] 2025-10-13 04:06:56,588 | INFO     | update_server=False
[2025-10-13 06:07:21] 2025-10-13 04:06:56,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:07:21] 2025-10-13 04:06:56,589 | INFO     | aborting loop
[2025-10-13 06:07:21] 2025-10-13 04:06:56,705 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:07:21] 2025-10-13 04:06:56,816 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:07:21] 2025-10-13 04:06:57,274 | INFO     | all data control threads have been joined
[2025-10-13 06:07:21] 2025-10-13 04:06:57,460 | INFO     | all job control threads have been joined
[2025-10-13 06:07:21] 2025-10-13 04:06:57,594 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:57,595 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:57,595 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:57,642 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:57,682 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:57,956 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:57,956 | INFO     | all payload control threads have been joined
[2025-10-13 06:07:21] 2025-10-13 04:06:58,123 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:58,280 | INFO     | [data] control thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:58,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:58,466 | INFO     | [job] control thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:58,712 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:58,945 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:58,962 | INFO     | [payload] control thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:06:59,057 | INFO     | [job] validate thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:07:00,823 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:07:07,601 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:07:21] 2025-10-13 04:07:08,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:07:21] 2025-10-13 04:07:14,573 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:07:21] 2025-10-13 04:07:16,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294502627136)>', '<ExcThread(monitor, started 140293420607232)>']
[2025-10-13 06:07:21] 2025-10-13 04:07:16,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:07:21] 2025-10-13 04:07:16,697 | INFO     | [monitor] control thread has ended
[2025-10-13 06:07:21] 2025-10-13 04:07:21,356 | INFO     | all workflow threads have been joined
[2025-10-13 06:07:21] 2025-10-13 04:07:21,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:07:21] 2025-10-13 04:07:21,357 | INFO     | traces error code: 0
[2025-10-13 06:07:21] 2025-10-13 04:07:21,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:07:21] 2025-10-13 04:07:21,424 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:07:21] 2025-10-13 04:07:21,428 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:07:21] 2025-10-13 04:07:21,432 [wrapper] pilotpid: 489388
[2025-10-13 06:07:21] 2025-10-13 04:07:21,435 [wrapper] Pilot exit status: 0
[2025-10-13 06:07:21] 2025-10-13 04:07:21,446 [wrapper] pandaids: 6840182365
[2025-10-13 06:07:21] 2025-10-13 04:07:21,468 [wrapper] cleanup supervisor_pilot  506477 489389
[2025-10-13 06:07:21] 2025-10-13 04:07:21,471 [wrapper] Test setup, not cleaning
[2025-10-13 06:07:21] 2025-10-13 04:07:21,474 [wrapper] apfmon messages muted
[2025-10-13 06:07:21] 2025-10-13 04:07:21,478 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:07:21] 2025-10-13 04:07:21,482 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:07:21]  *** Error codes and diagnostics ***
[2025-10-13 06:07:21]     "exeErrorCode": 0,
[2025-10-13 06:07:21]     "exeErrorDiag": "",
[2025-10-13 06:07:21]     "pilotErrorCode": 0,
[2025-10-13 06:07:21]     "pilotErrorDiag": "",
[2025-10-13 06:07:21]  *** Listing of results directory ***
[2025-10-13 06:07:21] total 406340
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 16:30 pilot3.tar.gz
[2025-10-13 06:07:21] -rwx------ 1 boinc boinc     36292 Oct 12 16:46 runpilot2-wrapper.sh
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:46 queuedata.json
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:07:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:57 run_atlas
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:57 job.xml
[2025-10-13 06:07:21] -rw-r--r-- 2 boinc boinc 221074351 Oct 13 04:57 EVNT.46676267._004534.pool.root.1
[2025-10-13 06:07:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:57 shared
[2025-10-13 06:07:21] -rw-r--r-- 2 boinc boinc    569679 Oct 13 04:57 input.tar.gz
[2025-10-13 06:07:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:57 start_atlas.sh
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:57 boinc_setup_complete
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc      6370 Oct 13 04:57 init_data.xml
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:57 boinc_lockfile
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc      2549 Oct 13 04:57 pandaJob.out
[2025-10-13 06:07:21] -rw------- 1 boinc boinc    974373 Oct 13 04:57 agis_schedconf.cvmfs.json
[2025-10-13 06:07:21] -rw------- 1 boinc boinc   1560580 Oct 13 04:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:07:21] drwx------ 5 boinc boinc      4096 Oct 13 04:57 pilot3
[2025-10-13 06:07:21] -rw------- 1 boinc boinc 189401131 Oct 13 06:06 HITS.46676269._081212.pool.root.1
[2025-10-13 06:07:21] -rw------- 1 boinc boinc        95 Oct 13 06:06 pilot_heartbeat.json
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:06 boinc_task_state.xml
[2025-10-13 06:07:21] -rw------- 1 boinc boinc      1022 Oct 13 06:06 memory_monitor_summary.json
[2025-10-13 06:07:21] -rw------- 1 boinc boinc    242970 Oct 13 06:06 log.46676269._081212.job.log.tgz.1
[2025-10-13 06:07:21] -rw------- 1 boinc boinc      7782 Oct 13 06:06 heartbeat.json
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:07 wrapper_checkpoint.txt
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:07 boinc_mmap_file
[2025-10-13 06:07:21] -rw------- 1 boinc boinc      4628 Oct 13 06:07 pilotlog.txt
[2025-10-13 06:07:21] -rw------- 1 boinc boinc    621552 Oct 13 06:07 log.46676269._081212.job.log.1
[2025-10-13 06:07:21] -rw------- 1 boinc boinc       357 Oct 13 06:07 output.list
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:07 runtime_log
[2025-10-13 06:07:21] -rw------- 1 boinc boinc    880640 Oct 13 06:07 result.tar.gz
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc      8792 Oct 13 06:07 runtime_log.err
[2025-10-13 06:07:21] -rw------- 1 boinc boinc       661 Oct 13 06:07 lglNDmQWCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDms9TMDmRX8Mrn.diag
[2025-10-13 06:07:21] -rw-r--r-- 1 boinc boinc     11624 Oct 13 06:07 stderr.txt
[2025-10-13 06:07:21] HITS file was successfully produced:
[2025-10-13 06:07:21] -rw------- 1 boinc boinc 189401131 Oct 13 06:06 shared/HITS.pool.root.1
[2025-10-13 06:07:21]  *** Contents of shared directory: ***
[2025-10-13 06:07:21] total 402304
[2025-10-13 06:07:21] -rw-r--r-- 2 boinc boinc 221074351 Oct 13 04:57 ATLAS.root_0
[2025-10-13 06:07:21] -rw-r--r-- 2 boinc boinc    569679 Oct 13 04:57 input.tar.gz
[2025-10-13 06:07:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:57 start_atlas.sh
[2025-10-13 06:07:21] -rw------- 1 boinc boinc 189401131 Oct 13 06:06 HITS.pool.root.1
[2025-10-13 06:07:21] -rw------- 1 boinc boinc    880640 Oct 13 06:07 result.tar.gz
06:07:23 (485611): run_atlas exited; CPU time 15718.585203
06:07:23 (485611): called boinc_finish(0)

</stderr_txt>
]]>

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