Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
19:40:37 (2508305): wrapper (7.7.26015): starting
19:40:37 (2508305): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 19:40:37] Arguments: --nthreads 8
[2025-10-12 19:40:37] Threads: 8
[2025-10-12 19:40:37] Checking for CVMFS
[2025-10-12 19:40:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:40:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:40:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:40:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:40:38] 2.13.2.0 8166 1890 57928 151629 2 57 3256995 4096001 6377 130560 0 6469708 99.997 70885 360 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 19:40:38] CVMFS is ok
[2025-10-12 19:40:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:40:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 19:40:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 19:40:38] Further information can be found at the LHC@home message board.
[2025-10-12 19:40:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:40:38] Checking for apptainer binary...
[2025-10-12 19:40:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:40:38] Running /usr/bin/apptainer --version
[2025-10-12 19:40:38] apptainer version 1.4.2
[2025-10-12 19:40:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:40:38] JM7
[2025-10-12 19:40:38] apptainer works
[2025-10-12 19:40:38] Set ATHENA_PROC_NUMBER=8
[2025-10-12 19:40:38] Set ATHENA_CORE_NUMBER=8
[2025-10-12 19:40:38] Starting ATLAS job with PandaID=6839865841
[2025-10-12 19:40:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:34:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:34:07] 2025-10-12 19:33:20,782 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:34:07] 2025-10-12 19:33:20,782 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:34:07] 2025-10-12 19:33:20,782 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:34:07] 2025-10-12 19:33:20,785 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:34:07] 2025-10-12 19:33:20,786 | INFO     | sum of square deviations: 424045160.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,786 | INFO     | sum of deviations: 11421126685.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,786 | INFO     | mean x: 1760294231.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,787 | INFO     | mean y: 2434084.585585586
[2025-10-12 21:34:07] 2025-10-12 19:33:20,787 | INFO     | -- intersect: -47408892140.96467
[2025-10-12 21:34:07] 2025-10-12 19:33:20,787 | INFO     | intersect: -47408892140.96467
[2025-10-12 21:34:07] 2025-10-12 19:33:20,787 | INFO     | chi2: 2.226188467247438
[2025-10-12 21:34:07] 2025-10-12 19:33:20,788 | INFO     | sum of square deviations: 369281342.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,788 | INFO     | sum of deviations: 17505492110.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,788 | INFO     | mean x: 1760294078.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,789 | INFO     | mean y: 2450328.9150943398
[2025-10-12 21:34:07] 2025-10-12 19:33:20,789 | INFO     | -- intersect: -83442908417.69316
[2025-10-12 21:34:07] 2025-10-12 19:33:20,789 | INFO     | intersect: -83442908417.69316
[2025-10-12 21:34:07] 2025-10-12 19:33:20,789 | INFO     | chi2: 1.5458731287204477
[2025-10-12 21:34:07] 2025-10-12 19:33:20,789 | INFO     | current chi2=1.5458731287204477 (change=30.559647062055067 %)
[2025-10-12 21:34:07] 2025-10-12 19:33:20,790 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,790 | INFO     | sum of deviations: 16581947809.999998
[2025-10-12 21:34:07] 2025-10-12 19:33:20,790 | INFO     | mean x: 1760293926.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,791 | INFO     | mean y: 2447500.673267327
[2025-10-12 21:34:07] 2025-10-12 19:33:20,791 | INFO     | -- intersect: -91371158586.17941
[2025-10-12 21:34:07] 2025-10-12 19:33:20,791 | INFO     | intersect: -91371158586.17941
[2025-10-12 21:34:07] 2025-10-12 19:33:20,791 | INFO     | chi2: 1.548144061762121
[2025-10-12 21:34:07] 2025-10-12 19:33:20,791 | INFO     | current chi2=1.548144061762121 (change=-0.14690293785965158 %)
[2025-10-12 21:34:07] 2025-10-12 19:33:20,791 | INFO     | right removable region: 100
[2025-10-12 21:34:07] 2025-10-12 19:33:20,792 | INFO     | sum of square deviations: 369281342.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,792 | INFO     | sum of deviations: -6001463497.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,792 | INFO     | mean x: 1760294383.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,793 | INFO     | mean y: 2481684.9716981133
[2025-10-12 21:34:07] 2025-10-12 19:33:20,793 | INFO     | -- intersect: 28610324193.098186
[2025-10-12 21:34:07] 2025-10-12 19:33:20,793 | INFO     | intersect: 28610324193.098186
[2025-10-12 21:34:07] 2025-10-12 19:33:20,793 | INFO     | chi2: 0.738386941309404
[2025-10-12 21:34:07] 2025-10-12 19:33:20,793 | INFO     | current chi2=0.738386941309404 (change=66.83178660868818 %)
[2025-10-12 21:34:07] 2025-10-12 19:33:20,794 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,794 | INFO     | sum of deviations: -6745435632.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,794 | INFO     | mean x: 1760294536.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,795 | INFO     | mean y: 2483887.2277227724
[2025-10-12 21:34:07] 2025-10-12 19:33:20,795 | INFO     | -- intersect: 37172724619.63305
[2025-10-12 21:34:07] 2025-10-12 19:33:20,795 | INFO     | intersect: 37172724619.63305
[2025-10-12 21:34:07] 2025-10-12 19:33:20,795 | INFO     | chi2: 0.7149999330335612
[2025-10-12 21:34:07] 2025-10-12 19:33:20,795 | INFO     | current chi2=0.7149999330335612 (change=3.1673106561675963 %)
[2025-10-12 21:34:07] 2025-10-12 19:33:20,795 | INFO     | left removable region: 20
[2025-10-12 21:34:07] 2025-10-12 19:33:20,796 | INFO     | sum of square deviations: 158737860.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,796 | INFO     | sum of deviations: 537854385.0
[2025-10-12 21:34:07] 2025-10-12 19:33:20,796 | INFO     | mean x: 1760294505.5
[2025-10-12 21:34:07] 2025-10-12 19:33:20,796 | INFO     | mean y: 2499850.2
[2025-10-12 21:34:07] 2025-10-12 19:33:20,796 | INFO     | -- intersect: -5961938114.848676
[2025-10-12 21:34:07] 2025-10-12 19:33:20,797 | INFO     | intersect: -5961938114.848676
[2025-10-12 21:34:07] 2025-10-12 19:33:20,797 | INFO     | chi2: 0.00012982505523911328
[2025-10-12 21:34:07] 2025-10-12 19:33:20,797 | INFO     | -- intersect: -5961938114.848676
[2025-10-12 21:34:07] 2025-10-12 19:33:20,797 | INFO     | current memory leak: 3.39 B/s (using 80 data points, chi2=0.00)
[2025-10-12 21:34:07] 2025-10-12 19:33:20,798 | INFO     | could have reported an average CPU frequency of 2435 MHz (7 samples)
[2025-10-12 21:34:07] 2025-10-12 19:33:20,798 | INFO     | ..............................
[2025-10-12 21:34:07] 2025-10-12 19:33:20,798 | INFO     | . Timing measurements:
[2025-10-12 21:34:07] 2025-10-12 19:33:20,798 | INFO     | . get job = 0 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,798 | INFO     | . initial setup = 2 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,798 | INFO     | . payload setup = 5 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,799 | INFO     | . stage-in = 0 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,799 | INFO     | . payload execution = 6716 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,799 | INFO     | . stage-out = 0 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,799 | INFO     | . log creation = 0 s
[2025-10-12 21:34:07] 2025-10-12 19:33:20,799 | INFO     | ..............................
[2025-10-12 21:34:07] 2025-10-12 19:33:21,255 | INFO     | 
[2025-10-12 21:34:07] 2025-10-12 19:33:21,255 | INFO     | job summary report
[2025-10-12 21:34:07] 2025-10-12 19:33:21,255 | INFO     | --------------------------------------------------
[2025-10-12 21:34:07] 2025-10-12 19:33:21,255 | INFO     | PanDA job id: 6839865841
[2025-10-12 21:34:07] 2025-10-12 19:33:21,255 | INFO     | task id: 46676269
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | errors: (none)
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | pilot state: finished 
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | transexitcode: 0
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | exeerrorcode: 0
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | exeerrordiag: 
[2025-10-12 21:34:07] 2025-10-12 19:33:21,256 | INFO     | exitcode: 0
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | exitmsg: OK
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | cpuconsumptiontime: 49439 s
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | nevents: 400
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | neventsw: 0
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | pid: 2519134
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | pgrp: 2519134
[2025-10-12 21:34:07] 2025-10-12 19:33:21,257 | INFO     | corecount: 8
[2025-10-12 21:34:07] 2025-10-12 19:33:21,258 | INFO     | event service: False
[2025-10-12 21:34:07] 2025-10-12 19:33:21,258 | INFO     | sizes: {0: 2348814, 5: 2349076, 11: 2349132, 6726: 2376532, 6729: 2385600, 6735: 2385738}
[2025-10-12 21:34:07] 2025-10-12 19:33:21,258 | INFO     | --------------------------------------------------
[2025-10-12 21:34:07] 2025-10-12 19:33:21,258 | INFO     | 
[2025-10-12 21:34:07] 2025-10-12 19:33:21,258 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2025-10-12 21:34:07] 2025-10-12 19:33:21,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,279 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,279 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,279 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:34:07] 2025-10-12 19:33:21,281 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:34:07] 2025-10-12 19:33:21,282 | INFO     | job 6839865841 has completed (purged errors)
[2025-10-12 21:34:07] 2025-10-12 19:33:21,282 | INFO     | overall cleanup function is called
[2025-10-12 21:34:07] 2025-10-12 19:33:22,286 | INFO     | --- collectZombieJob: --- 10, [2519134]
[2025-10-12 21:34:07] 2025-10-12 19:33:22,287 | INFO     | zombie collector waiting for pid 2519134
[2025-10-12 21:34:07] 2025-10-12 19:33:22,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:34:07] 2025-10-12 19:33:22,287 | INFO     | collected zombie processes
[2025-10-12 21:34:07] 2025-10-12 19:33:22,287 | INFO     | will attempt to kill all subprocesses of pid=2519134
[2025-10-12 21:34:07] 2025-10-12 19:33:22,675 | INFO     | process IDs to be killed: [2519134] (in reverse order)
[2025-10-12 21:34:07] 2025-10-12 19:33:22,769 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:34:07] 2025-10-12 19:33:22,770 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:34:07] 2025-10-12 19:33:22,780 | INFO     | did not find any defunct processes belonging to 2519134
[2025-10-12 21:34:07] 2025-10-12 19:33:22,788 | INFO     | did not find any defunct processes belonging to 2519134
[2025-10-12 21:34:07] 2025-10-12 19:33:22,789 | INFO     | ready for new job
[2025-10-12 21:34:07] 2025-10-12 19:33:22,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:34:07] 2025-10-12 19:33:22,792 | INFO     | ***************************************
[2025-10-12 21:34:07] 2025-10-12 19:33:22,792 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:34:07] 2025-10-12 19:33:22,792 | INFO     | ***************************************
[2025-10-12 21:34:07] 2025-10-12 19:33:22,793 | INFO     | 
[2025-10-12 21:34:07] 2025-10-12 19:33:22,797 | INFO     | architecture information:
[2025-10-12 21:34:07] 2025-10-12 19:33:22,797 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:34:07] 2025-10-12 19:33:22,813 | INFO     | cat /etc/os-release:
[2025-10-12 21:34:07] NAME="CentOS Linux"
[2025-10-12 21:34:07] VERSION="7 (Core)"
[2025-10-12 21:34:07] ID="centos"
[2025-10-12 21:34:07] ID_LIKE="rhel fedora"
[2025-10-12 21:34:07] VERSION_ID="7"
[2025-10-12 21:34:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:34:07] ANSI_COLOR="0;31"
[2025-10-12 21:34:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:34:07] HOME_URL="https://www.centos.org/"
[2025-10-12 21:34:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:34:07] 
[2025-10-12 21:34:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:34:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:34:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:34:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:34:07] 
[2025-10-12 21:34:07] 2025-10-12 19:33:22,814 | INFO     | ***************************************
[2025-10-12 21:34:07] 2025-10-12 19:33:23,317 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2025-10-12 21:34:07] 2025-10-12 19:33:23,334 | INFO     | sufficient remaining disk space (216984977408 B)
[2025-10-12 21:34:07] 2025-10-12 19:33:23,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:34:07] 2025-10-12 19:33:23,335 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:34:07] 2025-10-12 19:33:23,335 | INFO     | update_server=False
[2025-10-12 21:34:07] 2025-10-12 19:33:23,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:34:07] 2025-10-12 19:33:23,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:34:07] 2025-10-12 19:33:23,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:34:07] 2025-10-12 19:33:23,337 | INFO     | aborting loop
[2025-10-12 21:34:07] 2025-10-12 19:33:23,696 | INFO     | all payload control threads have been joined
[2025-10-12 21:34:07] 2025-10-12 19:33:24,276 | INFO     | all data control threads have been joined
[2025-10-12 21:34:07] 2025-10-12 19:33:24,279 | INFO     | all job control threads have been joined
[2025-10-12 21:34:07] 2025-10-12 19:33:24,341 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:24,342 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:24,344 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:24,453 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:24,535 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:24,701 | INFO     | [payload] control thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:24,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,039 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,129 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,281 | INFO     | [data] control thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,284 | INFO     | [job] control thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,334 | INFO     | [job] validate thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,342 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,514 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:25,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:34:07] 2025-10-12 19:33:25,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:34:07] 2025-10-12 19:33:26,928 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:29,614 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:34:07] 2025-10-12 19:33:53,952 | INFO     | PID=2512272 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:34:07] 2025-10-12 19:33:53,953 | INFO     | .. there are 8 such processes running
[2025-10-12 21:34:07] 2025-10-12 19:33:53,954 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:34:07] 2025-10-12 19:33:53,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:34:07] 2025-10-12 19:33:53,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:34:07] 2025-10-12 19:34:01,451 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:34:07] 2025-10-12 19:34:01,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132264899757888)>', '<ExcThread(monitor, started 132264549656320)>']
[2025-10-12 21:34:07] 2025-10-12 19:34:01,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:34:07] 2025-10-12 19:34:01,988 | INFO     | [monitor] control thread has ended
[2025-10-12 21:34:07] 2025-10-12 19:34:06,831 | INFO     | all workflow threads have been joined
[2025-10-12 21:34:07] 2025-10-12 19:34:06,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:34:07] 2025-10-12 19:34:06,831 | INFO     | traces error code: 0
[2025-10-12 21:34:07] 2025-10-12 19:34:06,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:34:07] 2025-10-12 19:34:06,966 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:34:07] 2025-10-12 19:34:06,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:34:07] 2025-10-12 19:34:06,973 [wrapper] pilotpid: 2512272
[2025-10-12 21:34:07] 2025-10-12 19:34:06,976 [wrapper] Pilot exit status: 0
[2025-10-12 21:34:07] 2025-10-12 19:34:06,988 [wrapper] pandaids: 6839865841
[2025-10-12 21:34:07] 2025-10-12 19:34:07,052 [wrapper] cleanup supervisor_pilot 2708115 2512273
[2025-10-12 21:34:07] 2025-10-12 19:34:07,055 [wrapper] Test setup, not cleaning
[2025-10-12 21:34:07] 2025-10-12 19:34:07,059 [wrapper] apfmon messages muted
[2025-10-12 21:34:07] 2025-10-12 19:34:07,062 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:34:07] 2025-10-12 19:34:07,065 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:34:07]  *** Error codes and diagnostics ***
[2025-10-12 21:34:07]     "exeErrorCode": 0,
[2025-10-12 21:34:07]     "exeErrorDiag": "",
[2025-10-12 21:34:07]     "pilotErrorCode": 0,
[2025-10-12 21:34:07]     "pilotErrorDiag": "",
[2025-10-12 21:34:07]  *** Listing of results directory ***
[2025-10-12 21:34:07] total 411364
[2025-10-12 21:34:07] -rw-r--r-- 1 josemi7 josemi7    557409 oct 12 11:51 pilot3.tar.gz
[2025-10-12 21:34:07] -rwx------ 1 josemi7 josemi7     36292 oct 12 11:54 runpilot2-wrapper.sh
[2025-10-12 21:34:07] -rw-r--r-- 1 josemi7 josemi7      5112 oct 12 11:55 queuedata.json
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7       100 oct 12 19:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:34:07] -rwxr-xr-x 1 josemi7 josemi7      7986 oct 12 19:40 run_atlas
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7       105 oct 12 19:40 job.xml
[2025-10-12 21:34:07] -rw-r--r-- 2 josemi7 josemi7 220185547 oct 12 19:40 EVNT.46676267._001644.pool.root.1
[2025-10-12 21:34:07] -rw-r--r-- 2 josemi7 josemi7    569687 oct 12 19:40 input.tar.gz
[2025-10-12 21:34:07] -rw-r--r-- 2 josemi7 josemi7     15120 oct 12 19:40 start_atlas.sh
[2025-10-12 21:34:07] drwxrwx--x 1 josemi7 josemi7        76 oct 12 19:40 shared
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7      6165 oct 12 19:40 init_data.xml
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7         0 oct 12 19:40 boinc_setup_complete
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7         0 oct 12 19:40 boinc_lockfile
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7      2550 oct 12 19:40 pandaJob.out
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7    975528 oct 12 19:40 agis_schedconf.cvmfs.json
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7   1560580 oct 12 19:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:34:07] drwx------ 1 josemi7 josemi7       414 oct 12 19:40 pilot3
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7 194500903 oct 12 21:32 HITS.46676269._075576.pool.root.1
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7       529 oct 12 21:32 boinc_task_state.xml
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7      1033 oct 12 21:33 memory_monitor_summary.json
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7    360601 oct 12 21:33 log.46676269._075576.job.log.tgz.1
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7      7768 oct 12 21:33 heartbeat.json
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7      8192 oct 12 21:33 boinc_mmap_file
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7        27 oct 12 21:33 wrapper_checkpoint.txt
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7        95 oct 12 21:33 pilot_heartbeat.json
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7      4831 oct 12 21:34 pilotlog.txt
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7    968832 oct 12 21:34 log.46676269._075576.job.log.1
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7       357 oct 12 21:34 output.list
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7       620 oct 12 21:34 runtime_log
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7   1351680 oct 12 21:34 result.tar.gz
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7      8729 oct 12 21:34 runtime_log.err
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7       639 oct 12 21:34 0vdKDmDy7R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmObTMDmEhNRJm.diag
[2025-10-12 21:34:07] -rw-rw-r-- 1 josemi7 josemi7     20898 oct 12 21:34 stderr.txt
[2025-10-12 21:34:07] HITS file was successfully produced:
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7 194500903 oct 12 21:32 shared/HITS.pool.root.1
[2025-10-12 21:34:07]  *** Contents of shared directory: ***
[2025-10-12 21:34:07] total 406868
[2025-10-12 21:34:07] -rw-r--r-- 2 josemi7 josemi7 220185547 oct 12 19:40 ATLAS.root_0
[2025-10-12 21:34:07] -rw-r--r-- 2 josemi7 josemi7    569687 oct 12 19:40 input.tar.gz
[2025-10-12 21:34:07] -rw-r--r-- 2 josemi7 josemi7     15120 oct 12 19:40 start_atlas.sh
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7 194500903 oct 12 21:32 HITS.pool.root.1
[2025-10-12 21:34:07] -rw------- 1 josemi7 josemi7   1351680 oct 12 21:34 result.tar.gz
21:34:08 (2508305): run_atlas exited; CPU time 49720.367629
21:34:08 (2508305): called boinc_finish(0)

</stderr_txt>
]]>

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