Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 06:05:36 (1356): vboxwrapper version 26210
2025-10-13 06:05:36 (1356): BOINC client version: 8.2.4
2025-10-13 06:05:36 (1356): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-10-13 06:05:37 (1356): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 06:05:37 (1356): Create VM. (boinc_f095c3b8da5ccfac, slot#1)
2025-10-13 06:05:37 (1356): Setting Memory Size for VM. (4700MB)
2025-10-13 06:05:38 (1356): Setting CPU Count for VM. (7)
2025-10-13 06:05:38 (1356): Setting Chipset Options for VM.
2025-10-13 06:05:38 (1356): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 06:05:38 (1356): Setting Boot Options for VM.
2025-10-13 06:05:39 (1356): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 06:05:39 (1356): Enabling VM Network Access.
2025-10-13 06:05:39 (1356): Disabling USB Support for VM.
2025-10-13 06:05:40 (1356): Disabling COM Port Support for VM.
2025-10-13 06:05:40 (1356): Disabling LPT Port Support for VM.
2025-10-13 06:05:40 (1356): Disabling Audio Support for VM.
2025-10-13 06:05:40 (1356): Disabling Clipboard Support for VM.
2025-10-13 06:05:41 (1356): Disabling Drag and Drop Support for VM.
2025-10-13 06:05:41 (1356): Adding storage controller(s) to VM.
2025-10-13 06:05:41 (1356): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 06:05:42 (1356): Adding VirtualBox Guest Additions to VM.
2025-10-13 06:05:42 (1356): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 06:05:42 (1356): forwarding host port 61424 to guest port 80
2025-10-13 06:05:42 (1356): Enabling remote desktop for VM.
2025-10-13 06:05:43 (1356): Required extension pack not installed, remote desktop not enabled.
2025-10-13 06:05:43 (1356): Enabling shared directory for VM.
2025-10-13 06:05:43 (1356): Starting VM using VBoxManage interface. (boinc_f095c3b8da5ccfac, slot#1)
2025-10-13 06:05:47 (1356): Successfully started VM. (PID = '23692')
2025-10-13 06:05:47 (1356): Reporting VM Process ID to BOINC.
2025-10-13 06:05:47 (1356): Guest Log: BIOS: VirtualBox 7.2.0
2025-10-13 06:05:47 (1356): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 06:05:47 (1356): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 06:05:47 (1356): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 06:05:47 (1356): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 06:05:47 (1356): Detected: Web Application Enabled (http://localhost:61424)
2025-10-13 06:05:47 (1356): Preference change detected
2025-10-13 06:05:47 (1356): Setting CPU throttle for VM. (100%)
2025-10-13 06:05:47 (1356): Setting checkpoint interval to 3300 seconds. (Higher value of (Preference: 3300 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 06:05:49 (1356): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 06:05:49 (1356): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 06:05:52 (1356): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 06:05:52 (1356): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 06:05:52 (1356): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 06:05:58 (1356): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 06:05:58 (1356): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 06:06:01 (1356): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000113 main     Log opened 2025-10-13T06:05:59.581146000Z
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000190 main     OS Product: Linux
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000268 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000294 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000317 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000318 main     Process ID: 1353
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000318 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 06:06:01 (1356): Guest Log: 00:00:00.000908 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 06:06:01 (1356): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 06:06:01 (1356): Guest Log: [INFO] Mounting shared directory
2025-10-13 06:06:01 (1356): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 06:06:06 (1356): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 06:06:06 (1356): Guest Log: [INFO] Detected branch: prod
2025-10-13 06:06:06 (1356): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 06:06:06 (1356): Guest Log: Copying input files
2025-10-13 06:06:07 (1356): Guest Log: Copied input files into RunAtlas.
2025-10-13 06:06:07 (1356): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 06:06:07 (1356): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 06:06:07 (1356): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 06:06:07 (1356): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 06:06:11 (1356): Guest Log: 00:00:10.012014 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 117 720 000ns (GuestNow=1 760 303 171 465 134 000 ns GuestLast=1 760 335 559 582 854 000 ns fSetTimeLastLoop=true )
2025-10-13 06:06:15 (1356): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 06:06:15 (1356): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 06:06:15 (1356): Guest Log: 2.6.3.0 1648 0 32092 151636 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 06:06:16 (1356): Guest Log: copied the webapp to /var/www
2025-10-13 06:06:16 (1356): Guest Log: ATHENA_PROC_NUMBER=7
2025-10-13 06:06:16 (1356): Guest Log: ATHENA_CORE_NUMBER=7
2025-10-13 06:06:16 (1356): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 06:06:16 (1356): Guest Log:  *** Starting ATLAS job. (PandaID=6839163834 taskID=46676269) ***
2025-10-13 06:53:07 (1356): Guest Log:  *** Job finished ***
2025-10-13 06:53:07 (1356): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:52:49,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:52:49,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:52:59,406 | INFO     | [monitor] cgroup control has ended
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:01,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140511768389440)>', '<ExcThread(monitor, started 140510517782272)>']
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:02,321 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:02,321 | INFO     | [monitor] control thread has ended
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,441 | INFO     | all workflow threads have been joined
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,441 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,441 | INFO     | traces error code: 0
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,481 [wrapper] ==== pilot stdout END ====
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,485 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,488 [wrapper] pilotpid: 6053
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,491 [wrapper] Pilot exit status: 0
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,537 [wrapper] pandaids: 6839163834
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,567 [wrapper] cleanup supervisor_pilot 21555 6054
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,572 [wrapper] Test setup, not cleaning
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,575 [wrapper] apfmon messages muted
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,578 [wrapper] ==== wrapper stdout END ====
2025-10-13 06:53:07 (1356): Guest Log: 2025-10-12 21:53:06,582 [wrapper] ==== wrapper stderr END ====
2025-10-13 06:53:07 (1356): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 06:53:07 (1356): Guest Log:     "exeErrorCode": 0,
2025-10-13 06:53:07 (1356): Guest Log:     "exeErrorDiag": "",
2025-10-13 06:53:07 (1356): Guest Log:     "pilotErrorCode": 0,
2025-10-13 06:53:07 (1356): Guest Log:     "pilotErrorDiag": "",
2025-10-13 06:53:07 (1356): Guest Log:  *** Listing of results directory ***
2025-10-13 06:53:07 (1356): Guest Log: total 200372
2025-10-13 06:53:07 (1356): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 00:05 pilot3.tar.gz
2025-10-13 06:53:07 (1356): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 00:22 queuedata.json
2025-10-13 06:53:07 (1356): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 00:22 runpilot2-wrapper.sh
2025-10-13 06:53:07 (1356): Guest Log: -rwxr-xr-x. 1 atlas atlas      8961 Oct 12 21:06 init_data.xml
2025-10-13 06:53:07 (1356): Guest Log: -rwxr-xr-x. 1 atlas atlas    569684 Oct 12 21:06 input.tar.gz
2025-10-13 06:53:07 (1356): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 21:06 start_atlas.sh
2025-10-13 06:53:07 (1356): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 21:06 EVNT.46676267._002755.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 06:53:07 (1356): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 21:06 pandaJob.out
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas    975536 Oct 12 21:06 agis_schedconf.cvmfs.json
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 21:06 agis_ddmendpoints.agis.ALL.json
2025-10-13 06:53:07 (1356): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 21:06 pilot3
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas 199974254 Oct 12 21:51 HITS.46676269._067538.pool.root.1
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas      1028 Oct 12 21:52 memory_monitor_summary.json
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 21:52 pilot_heartbeat.json
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas    286021 Oct 12 21:52 log.46676269._067538.job.log.tgz.1
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas      7813 Oct 12 21:52 heartbeat.json
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 12 21:53 pilotlog.txt
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas    399930 Oct 12 21:53 log.46676269._067538.job.log.1
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 21:53 output.list
2025-10-13 06:53:07 (1356): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 21:53 runtime_log
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas    706560 Oct 12 21:53 result.tar.gz
2025-10-13 06:53:07 (1356): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Oct 12 21:53 runtime_log.err
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas       650 Oct 12 21:53 KADNDmX2yR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmd2hNDm1ymT1m.diag
2025-10-13 06:53:07 (1356): Guest Log: Looking for outputfile HITS.46676269._067538.pool.root.1
2025-10-13 06:53:07 (1356): Guest Log: HITS file was successfully produced
2025-10-13 06:53:07 (1356): Guest Log: -rw-------. 1 atlas atlas 199974254 Oct 12 21:51 /home/atlas/RunAtlas/HITS.46676269._067538.pool.root.1
2025-10-13 06:53:08 (1356): Guest Log: Successfully finished the ATLAS job!
2025-10-13 06:53:08 (1356): Guest Log: Copying the results back to the shared directory!
2025-10-13 06:53:08 (1356): Guest Log:  *** Contents of shared directory: ***
2025-10-13 06:53:08 (1356): Guest Log: total 413616
2025-10-13 06:53:08 (1356): Guest Log: -rwxrwxrwx. 1 root root 222254308 Oct 12 21:05 ATLAS.root_0
2025-10-13 06:53:08 (1356): Guest Log: -rwxrwxrwx. 1 root root 199974254 Oct 12 21:53 HITS.pool.root.1
2025-10-13 06:53:08 (1356): Guest Log: -rwxrwxrwx. 1 root root      8961 Oct 12 21:05 init_data.xml
2025-10-13 06:53:08 (1356): Guest Log: -rwxrwxrwx. 1 root root    569684 Oct 12 16:03 input.tar.gz
2025-10-13 06:53:08 (1356): Guest Log: -rwxrwxrwx. 1 root root    706560 Oct 12 21:53 result.tar.gz
2025-10-13 06:53:08 (1356): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 16:04 start_atlas.sh
2025-10-13 06:53:08 (1356): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 06:53:08 (1356): VM Completion File Detected.
2025-10-13 06:53:08 (1356): Powering off VM.
2025-10-13 06:53:09 (1356): Successfully stopped VM.
2025-10-13 06:53:09 (1356): Deregistering VM. (boinc_f095c3b8da5ccfac, slot#1)
2025-10-13 06:53:09 (1356): Removing network bandwidth throttle group from VM.
2025-10-13 06:53:09 (1356): Removing VM from VirtualBox.
2025-10-13 06:53:14 (1356): called boinc_finish(0)

</stderr_txt>
]]>

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