Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:27:59 (4137309): wrapper (7.7.26015): starting
12:27:59 (4137309): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:27:59] Arguments: --nthreads 8
[2025-10-12 12:27:59] Threads: 8
[2025-10-12 12:27:59] Checking for CVMFS
[2025-10-12 12:27:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:27:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:27:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:28:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:28:00] 2.13.2.0 3269412 35966 387132 151625 0 491 35499228 40960000 62648 16776704 0 462520207 99.847 184748569 36779 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:28:00] CVMFS is ok
[2025-10-12 12:28:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:28:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:28:00] Further information can be found at the LHC@home message board.
[2025-10-12 12:28:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:28:00] Checking for apptainer binary...
[2025-10-12 12:28:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:28:00] Running /usr/bin/apptainer --version
[2025-10-12 12:28:00] apptainer version 1.4.3-1.el9
[2025-10-12 12:28:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:28:00] c8-16-2.aglt2.org
[2025-10-12 12:28:00] apptainer works
[2025-10-12 12:28:00] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:28:00] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:28:00] Starting ATLAS job with PandaID=6839988400
[2025-10-12 12:28:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:35:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:35:58] 2025-10-12 17:35:10,799 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6839988400/log.46676269._078493.job.log.tgz.1 /tmp/boinchome/slots/6/log.46676269._078493.job
[2025-10-12 13:35:58] 2025-10-12 17:35:10,824 | INFO     | adding to output.list: log.46676269._078493.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5b/d2/log.46676269._078493.job.log.tg
[2025-10-12 13:35:58] 2025-10-12 17:35:10,824 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:35:58] 2025-10-12 17:35:10,824 | INFO     | summary of transferred files:
[2025-10-12 13:35:58] 2025-10-12 17:35:10,825 | INFO     |  -- lfn=log.46676269._078493.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:35:58] 2025-10-12 17:35:10,825 | INFO     | stage-out finished correctly
[2025-10-12 13:35:58] 2025-10-12 17:35:11,117 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:35:58] 2025-10-12 17:35:11,903 | INFO     | job 6839988400 has state=finished
[2025-10-12 13:35:58] 2025-10-12 17:35:11,903 | INFO     | preparing for final server update for job 6839988400 in state='finished'
[2025-10-12 13:35:58] 2025-10-12 17:35:11,904 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:35:58] 2025-10-12 17:35:11,904 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:35:58] 2025-10-12 17:35:11,904 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:35:58] 2025-10-12 17:35:11,904 | INFO     | job 6839988400 has finished - writing final server update
[2025-10-12 13:35:58] 2025-10-12 17:35:11,904 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:35:58] 2025-10-12 17:35:11,904 | INFO     | executing command: lscpu
[2025-10-12 13:35:58] 2025-10-12 17:35:12,025 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:35:58] 2025-10-12 17:35:12,582 | INFO     | time since job start (3996s) is within the limit (172800.0s)
[2025-10-12 13:35:58] 2025-10-12 17:35:14,590 | INFO     | time since job start (3998s) is within the limit (172800.0s)
[2025-10-12 13:35:58] 2025-10-12 17:35:16,599 | INFO     | time since job start (4000s) is within the limit (172800.0s)
[2025-10-12 13:35:58] 2025-10-12 17:35:17,362 | WARNING  | process 4163180 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:35:58] 2025-10-12 17:35:17,363 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6839988400/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:35:58] 2025-10-12 17:35:17,363 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6839988400/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:35:58] 2025-10-12 17:35:17,364 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 13:35:58] 2025-10-12 17:35:17,364 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 13:35:58] 2025-10-12 17:35:18,759 | INFO     | number of running child processes to parent process 4163180: 1
[2025-10-12 13:35:58] 2025-10-12 17:35:18,759 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:35:58] 2025-10-12 17:35:19,316 | INFO     | PID=4144675 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 13:35:58] 2025-10-12 17:35:19,318 | INFO     | .. there are 94 such processes running
[2025-10-12 13:35:58] 2025-10-12 17:35:20,319 | INFO     | time since job start (4004s) is within the limit (172800.0s)
[2025-10-12 13:35:58] 2025-10-12 17:35:21,263 | INFO     | monitor loop #261: job 0:6839988400 is in state 'finished'
[2025-10-12 13:35:58] 2025-10-12 17:35:21,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:35:58] 2025-10-12 17:35:22,325 | INFO     | time since job start (4006s) is within the limit (172800.0s)
[2025-10-12 13:35:58] 2025-10-12 17:35:23,767 | INFO     | monitor loop #262: job 0:6839988400 is in state 'finished'
[2025-10-12 13:35:58] 2025-10-12 17:35:23,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:35:58] 2025-10-12 17:35:24,333 | INFO     | time since job start (4008s) is within the limit (172800.0s)
[2025-10-12 13:35:58] 2025-10-12 17:35:24,894 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 13:35:58] 2025-10-12 17:35:24,899 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.6917890624977
[2025-10-12 13:35:58] 2025-10-12 17:35:24,912 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6839988400/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:35:58] 2025-10-12 17:35:24,913 | INFO     | extracted standard info from prmon json
[2025-10-12 13:35:58] 2025-10-12 17:35:24,913 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:35:58] 2025-10-12 17:35:24,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:35:58] 2025-10-12 17:35:24,913 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:35:58] 2025-10-12 17:35:24,913 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | sum of square deviations: 60482994.5
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | sum of deviations: 696105648.0
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | mean x: 1760288634.5
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | mean y: 2151558.9310344825
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | -- intersect: -20257210113.14454
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | intersect: -20257210113.14454
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | chi2: 0.02520957416370055
[2025-10-12 13:35:58] 2025-10-12 17:35:24,914 | INFO     | -- intersect: -20257210113.14454
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | current memory leak: 11.51 B/s (using 58 data points, chi2=0.03)
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | could have reported an average CPU frequency of 3794 MHz (6 samples)
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | ..............................
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . Timing measurements:
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . get job = 0 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . initial setup = 3 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . payload setup = 19 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . stage-in = 0 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . payload execution = 3932 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . stage-out = 0 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | . log creation = 0 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,915 | INFO     | ..............................
[2025-10-12 13:35:58] 2025-10-12 17:35:24,972 | INFO     | 
[2025-10-12 13:35:58] 2025-10-12 17:35:24,972 | INFO     | job summary report
[2025-10-12 13:35:58] 2025-10-12 17:35:24,972 | INFO     | --------------------------------------------------
[2025-10-12 13:35:58] 2025-10-12 17:35:24,972 | INFO     | PanDA job id: 6839988400
[2025-10-12 13:35:58] 2025-10-12 17:35:24,972 | INFO     | task id: 46676269
[2025-10-12 13:35:58] 2025-10-12 17:35:24,972 | INFO     | errors: (none)
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | pilot state: finished 
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | transexitcode: 0
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | exeerrorcode: 0
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | exeerrordiag: 
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | exitcode: 0
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | exitmsg: OK
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | cpuconsumptiontime: 22455 s
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | nevents: 400
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | neventsw: 0
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | pid: 4163180
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | pgrp: 4163180
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | corecount: 8
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | event service: False
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | sizes: {0: 2348857, 1: 2348857, 11: 2348885, 16: 2349175, 22: 2349203, 3955: 2375173, 3956: 2384227, 3970: 2384365}
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | --------------------------------------------------
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | 
[2025-10-12 13:35:58] 2025-10-12 17:35:24,973 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-10-12 13:35:58] 2025-10-12 17:35:25,023 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | job 6839988400 has completed (purged errors)
[2025-10-12 13:35:58] 2025-10-12 17:35:25,024 | INFO     | overall cleanup function is called
[2025-10-12 13:35:58] 2025-10-12 17:35:26,031 | INFO     | --- collectZombieJob: --- 10, [4163180]
[2025-10-12 13:35:58] 2025-10-12 17:35:26,031 | INFO     | zombie collector waiting for pid 4163180
[2025-10-12 13:35:58] 2025-10-12 17:35:26,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:35:58] 2025-10-12 17:35:26,031 | INFO     | collected zombie processes
[2025-10-12 13:35:58] 2025-10-12 17:35:26,031 | INFO     | will attempt to kill all subprocesses of pid=4163180
[2025-10-12 13:35:58] 2025-10-12 17:35:26,753 | INFO     | process IDs to be killed: [4163180] (in reverse order)
[2025-10-12 13:35:58] 2025-10-12 17:35:27,019 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:35:58] 2025-10-12 17:35:27,020 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:35:58] 2025-10-12 17:35:27,081 | INFO     | did not find any defunct processes belonging to 4163180
[2025-10-12 13:35:58] 2025-10-12 17:35:27,138 | INFO     | did not find any defunct processes belonging to 4163180
[2025-10-12 13:35:58] 2025-10-12 17:35:27,138 | INFO     | ready for new job
[2025-10-12 13:35:58] 2025-10-12 17:35:27,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:35:58] 2025-10-12 17:35:27,139 | INFO     | ***************************************
[2025-10-12 13:35:58] 2025-10-12 17:35:27,139 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:35:58] 2025-10-12 17:35:27,139 | INFO     | ***************************************
[2025-10-12 13:35:58] 2025-10-12 17:35:27,139 | INFO     | 
[2025-10-12 13:35:58] 2025-10-12 17:35:27,144 | INFO     | architecture information:
[2025-10-12 13:35:58] 2025-10-12 17:35:27,144 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:35:58] 2025-10-12 17:35:27,162 | INFO     | cat /etc/os-release:
[2025-10-12 13:35:58] NAME="CentOS Linux"
[2025-10-12 13:35:58] VERSION="7 (Core)"
[2025-10-12 13:35:58] ID="centos"
[2025-10-12 13:35:58] ID_LIKE="rhel fedora"
[2025-10-12 13:35:58] VERSION_ID="7"
[2025-10-12 13:35:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:35:58] ANSI_COLOR="0;31"
[2025-10-12 13:35:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:35:58] HOME_URL="https://www.centos.org/"
[2025-10-12 13:35:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:35:58] 
[2025-10-12 13:35:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:35:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:35:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:35:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:35:58] 
[2025-10-12 13:35:58] 2025-10-12 17:35:27,163 | INFO     | ***************************************
[2025-10-12 13:35:58] 2025-10-12 17:35:27,665 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-10-12 13:35:58] 2025-10-12 17:35:27,687 | INFO     | sufficient remaining disk space (167877017600 B)
[2025-10-12 13:35:58] 2025-10-12 17:35:27,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:35:58] 2025-10-12 17:35:27,688 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:35:58] 2025-10-12 17:35:27,688 | INFO     | update_server=False
[2025-10-12 13:35:58] 2025-10-12 17:35:27,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:35:58] 2025-10-12 17:35:27,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:35:58] 2025-10-12 17:35:27,689 | INFO     | aborting loop
[2025-10-12 13:35:58] 2025-10-12 17:35:28,496 | INFO     | all data control threads have been joined
[2025-10-12 13:35:58] 2025-10-12 17:35:28,670 | INFO     | all job control threads have been joined
[2025-10-12 13:35:58] 2025-10-12 17:35:28,693 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:28,694 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:28,779 | INFO     | [job] validate thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:28,923 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:35:58] 2025-10-12 17:35:28,981 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:28,984 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,005 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,014 | INFO     | all payload control threads have been joined
[2025-10-12 13:35:58] 2025-10-12 17:35:29,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,501 | INFO     | [data] control thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,600 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,676 | INFO     | [job] control thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,815 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:29,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:35:58] 2025-10-12 17:35:30,020 | INFO     | [payload] control thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:30,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:35:58] 2025-10-12 17:35:30,930 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:30,993 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:34,760 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:38,073 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:35:58] 2025-10-12 17:35:39,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:35:58] 2025-10-12 17:35:42,969 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:35:58] 2025-10-12 17:35:43,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788645279552)>', '<ExcThread(monitor, started 139788157970176)>']
[2025-10-12 13:35:58] 2025-10-12 17:35:49,008 | INFO     | all workflow threads have been joined
[2025-10-12 13:35:58] 2025-10-12 17:35:49,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:35:58] 2025-10-12 17:35:49,008 | INFO     | traces error code: 0
[2025-10-12 13:35:58] 2025-10-12 17:35:49,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:35:58] 2025-10-12 17:35:58,192 | INFO     | PID=4144675 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:35:58] 2025-10-12 17:35:58,193 | INFO     | .. there are 95 such processes running
[2025-10-12 13:35:58] 2025-10-12 17:35:58,194 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:35:58] 2025-10-12 17:35:58,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:35:58] 2025-10-12 17:35:58,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:35:58] 2025-10-12 17:35:58,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:35:58] 2025-10-12 17:35:58,194 | INFO     | [monitor] control thread has ended
[2025-10-12 13:35:58] 2025-10-12 17:35:58,341 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:35:58] 2025-10-12 17:35:58,344 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:35:58] 2025-10-12 17:35:58,346 [wrapper] pilotpid: 4144675
[2025-10-12 13:35:58] 2025-10-12 17:35:58,356 [wrapper] Pilot exit status: 0
[2025-10-12 13:35:58] 2025-10-12 17:35:58,383 [wrapper] pandaids: 6839988400
[2025-10-12 13:35:58] 2025-10-12 17:35:58,651 [wrapper] cleanup supervisor_pilot  536996 4144676
[2025-10-12 13:35:58] 2025-10-12 17:35:58,654 [wrapper] Test setup, not cleaning
[2025-10-12 13:35:58] 2025-10-12 17:35:58,663 [wrapper] apfmon messages muted
[2025-10-12 13:35:58] 2025-10-12 17:35:58,672 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:35:58] 2025-10-12 17:35:58,678 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:35:58]  *** Error codes and diagnostics ***
[2025-10-12 13:35:58]     "exeErrorCode": 0,
[2025-10-12 13:35:58]     "exeErrorDiag": "",
[2025-10-12 13:35:58]     "pilotErrorCode": 0,
[2025-10-12 13:35:58]     "pilotErrorDiag": "",
[2025-10-12 13:35:58]  *** Listing of results directory ***
[2025-10-12 13:35:58] total 412560
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:41 queuedata.json
[2025-10-12 13:35:58] -rwx------. 1 boincer umatlas     36292 Oct 12 08:42 runpilot2-wrapper.sh
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:35:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:27 run_atlas
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:27 job.xml
[2025-10-12 13:35:58] -rw-r--r--. 2 boincer umatlas 222903735 Oct 12 12:27 EVNT.46676267._003809.pool.root.1
[2025-10-12 13:35:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:27 start_atlas.sh
[2025-10-12 13:35:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:27 shared
[2025-10-12 13:35:58] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 12:27 input.tar.gz
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:27 boinc_lockfile
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:28 pandaJob.out
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas    975528 Oct 12 12:28 agis_schedconf.cvmfs.json
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:35:58] drwx------. 5 boincer umatlas      4096 Oct 12 12:28 pilot3
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 13:31 init_data.xml
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas 193921975 Oct 12 13:34 HITS.46676269._078493.pool.root.1
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas       530 Oct 12 13:34 boinc_task_state.xml
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas      1037 Oct 12 13:35 memory_monitor_summary.json
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas    316028 Oct 12 13:35 log.46676269._078493.job.log.tgz.1
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas      7782 Oct 12 13:35 heartbeat.json
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:35 boinc_mmap_file
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas        27 Oct 12 13:35 wrapper_checkpoint.txt
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas        95 Oct 12 13:35 pilot_heartbeat.json
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas       823 Oct 12 13:35 pilotlog.txt
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas    556796 Oct 12 13:35 log.46676269._078493.job.log.1
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas       357 Oct 12 13:35 output.list
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:35 runtime_log
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas    890880 Oct 12 13:35 result.tar.gz
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 13:35 runtime_log.err
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas       650 Oct 12 13:35 EOdNDm3ZAS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmstTMDmsTIIFo.diag
[2025-10-12 13:35:58] -rw-r--r--. 1 boincer umatlas     13983 Oct 12 13:35 stderr.txt
[2025-10-12 13:35:58] HITS file was successfully produced:
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas 193921975 Oct 12 13:34 shared/HITS.pool.root.1
[2025-10-12 13:35:58]  *** Contents of shared directory: ***
[2025-10-12 13:35:58] total 408512
[2025-10-12 13:35:58] -rw-r--r--. 2 boincer umatlas 222903735 Oct 12 12:27 ATLAS.root_0
[2025-10-12 13:35:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:27 start_atlas.sh
[2025-10-12 13:35:58] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 12:27 input.tar.gz
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas 193921975 Oct 12 13:34 HITS.pool.root.1
[2025-10-12 13:35:58] -rw-------. 1 boincer umatlas    890880 Oct 12 13:35 result.tar.gz
13:36:00 (4137309): run_atlas exited; CPU time 22572.319637
13:36:00 (4137309): called boinc_finish(0)

</stderr_txt>
]]>

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