Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:57:44 (7481): wrapper (7.7.26015): starting
11:57:44 (7481): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:57:44] Arguments: --nthreads 12
[2025-10-12 11:57:44] Threads: 12
[2025-10-12 11:57:44] Checking for CVMFS
[2025-10-12 11:57:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:57:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:57:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:57:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:57:44] 2.11.2.0 3035 223045 96732 151625 2 57 15197579 20275201 1 130560 3 108388791 99.984 13659609 12619 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:57:44] CVMFS is ok
[2025-10-12 11:57:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:57:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:57:44] Further information can be found at the LHC@home message board.
[2025-10-12 11:57:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:57:44] Checking for apptainer binary...
[2025-10-12 11:57:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:57:44] Running /usr/bin/apptainer --version
[2025-10-12 11:57:44] apptainer version 1.3.2-1.el7
[2025-10-12 11:57:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:57:46] c-205-31.aglt2.org
[2025-10-12 11:57:46] apptainer works
[2025-10-12 11:57:46] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:57:46] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:57:46] Starting ATLAS job with PandaID=6839928734
[2025-10-12 11:57:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:13:13]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:13:13]  status_code=0
[2025-10-12 13:13:13]  storage_token=
[2025-10-12 13:13:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839928734/log.46676269._077871.job.log.tgz.1
[2025-10-12 13:13:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/d3/log.46676269._077871.job.log.tgz.1
[2025-10-12 13:13:13]  workdir=None
[2025-10-12 13:13:13] ]
[2025-10-12 13:13:13] 2025-10-12 17:12:00,206 | INFO     | transferring file log.46676269._077871.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839928734/log.46676269._077871.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:13:13] 2025-10-12 17:12:00,206 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839928734/log.46676269._077871.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077871.job
[2025-10-12 13:13:13] 2025-10-12 17:12:00,228 | INFO     | adding to output.list: log.46676269._077871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/d3/log.46676269._077871.job.log.tg
[2025-10-12 13:13:13] 2025-10-12 17:12:00,229 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:13:13] 2025-10-12 17:12:00,229 | INFO     | summary of transferred files:
[2025-10-12 13:13:13] 2025-10-12 17:12:00,229 | INFO     |  -- lfn=log.46676269._077871.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:13:13] 2025-10-12 17:12:00,229 | INFO     | stage-out finished correctly
[2025-10-12 13:13:13] 2025-10-12 17:12:00,611 | INFO     | time since job start (4439s) is within the limit (172800.0s)
[2025-10-12 13:13:13] 2025-10-12 17:12:01,336 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:13:13] 2025-10-12 17:12:02,617 | INFO     | time since job start (4441s) is within the limit (172800.0s)
[2025-10-12 13:13:13] 2025-10-12 17:12:02,627 | WARNING  | process 17628 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:13:13] 2025-10-12 17:12:02,627 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928734/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:13:13] 2025-10-12 17:12:02,711 | INFO     | number of running child processes to parent process 17628: 1
[2025-10-12 13:13:13] 2025-10-12 17:12:02,711 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:13:13] 2025-10-12 17:12:03,865 | INFO     | job 6839928734 has state=finished
[2025-10-12 13:13:13] 2025-10-12 17:12:03,865 | INFO     | preparing for final server update for job 6839928734 in state='finished'
[2025-10-12 13:13:13] 2025-10-12 17:12:03,866 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:13:13] 2025-10-12 17:12:03,866 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:13:13] 2025-10-12 17:12:03,866 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:13:13] 2025-10-12 17:12:03,866 | INFO     | job 6839928734 has finished - writing final server update
[2025-10-12 13:13:13] 2025-10-12 17:12:03,867 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:13:13] 2025-10-12 17:12:03,868 | INFO     | executing command: lscpu
[2025-10-12 13:13:13] 2025-10-12 17:12:03,895 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:13:13] 2025-10-12 17:12:04,623 | INFO     | time since job start (4443s) is within the limit (172800.0s)
[2025-10-12 13:13:13] 2025-10-12 17:12:05,214 | INFO     | monitor loop #332: job 0:6839928734 is in state 'finished'
[2025-10-12 13:13:13] 2025-10-12 17:12:05,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:13:13] 2025-10-12 17:12:06,624 | INFO     | time since job start (4445s) is within the limit (172800.0s)
[2025-10-12 13:13:13] 2025-10-12 17:12:07,725 | INFO     | monitor loop #333: job 0:6839928734 is in state 'finished'
[2025-10-12 13:13:13] 2025-10-12 17:12:07,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:13:13] 2025-10-12 17:12:08,629 | INFO     | time since job start (4447s) is within the limit (172800.0s)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,633 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:13:13] 2025-10-12 17:12:09,637 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2025-10-12 13:13:13] 2025-10-12 17:12:09,639 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928734/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,640 | INFO     | extracted standard info from prmon json
[2025-10-12 13:13:13] 2025-10-12 17:12:09,640 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:13:13] 2025-10-12 17:12:09,641 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:13:13] 2025-10-12 17:12:09,641 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:13:13] 2025-10-12 17:12:09,641 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:13:13] 2025-10-12 17:12:09,643 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:13:13] 2025-10-12 17:12:09,644 | INFO     | sum of square deviations: 89127252.5
[2025-10-12 13:13:13] 2025-10-12 17:12:09,644 | INFO     | sum of deviations: -7647542062.000001
[2025-10-12 13:13:13] 2025-10-12 17:12:09,644 | INFO     | mean x: 1760286997.5
[2025-10-12 13:13:13] 2025-10-12 17:12:09,645 | INFO     | mean y: 2790312.3333333335
[2025-10-12 13:13:13] 2025-10-12 17:12:09,645 | INFO     | -- intersect: 151043784811.43942
[2025-10-12 13:13:13] 2025-10-12 17:12:09,645 | INFO     | intersect: 151043784811.43942
[2025-10-12 13:13:13] 2025-10-12 17:12:09,645 | INFO     | chi2: 0.086722825190191
[2025-10-12 13:13:13] 2025-10-12 17:12:09,645 | INFO     | -- intersect: 151043784811.43942
[2025-10-12 13:13:13] 2025-10-12 17:12:09,645 | INFO     | current memory leak: -85.80 B/s (using 66 data points, chi2=0.09)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | could have reported an average CPU frequency of 2065 MHz (6 samples)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | ..............................
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . Timing measurements:
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . get job = 0 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . initial setup = 2 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . payload setup = 7 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . stage-in = 0 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . payload execution = 4410 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . stage-out = 0 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,646 | INFO     | . log creation = 0 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,647 | INFO     | ..............................
[2025-10-12 13:13:13] 2025-10-12 17:12:09,728 | INFO     | 
[2025-10-12 13:13:13] 2025-10-12 17:12:09,728 | INFO     | job summary report
[2025-10-12 13:13:13] 2025-10-12 17:12:09,729 | INFO     | --------------------------------------------------
[2025-10-12 13:13:13] 2025-10-12 17:12:09,729 | INFO     | PanDA job id: 6839928734
[2025-10-12 13:13:13] 2025-10-12 17:12:09,729 | INFO     | task id: 46676269
[2025-10-12 13:13:13] 2025-10-12 17:12:09,729 | INFO     | errors: (none)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:13:13] 2025-10-12 17:12:09,729 | INFO     | pilot state: finished 
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | transexitcode: 0
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | exeerrorcode: 0
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | exeerrordiag: 
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | exitcode: 0
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | exitmsg: OK
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | cpuconsumptiontime: 47616 s
[2025-10-12 13:13:13] 2025-10-12 17:12:09,730 | INFO     | nevents: 400
[2025-10-12 13:13:13] 2025-10-12 17:12:09,731 | INFO     | neventsw: 0
[2025-10-12 13:13:13] 2025-10-12 17:12:09,731 | INFO     | pid: 17628
[2025-10-12 13:13:13] 2025-10-12 17:12:09,731 | INFO     | pgrp: 17628
[2025-10-12 13:13:13] 2025-10-12 17:12:09,731 | INFO     | corecount: 12
[2025-10-12 13:13:13] 2025-10-12 17:12:09,731 | INFO     | event service: False
[2025-10-12 13:13:13] 2025-10-12 17:12:09,731 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4420: 2375252, 4422: 2384250, 4424: 2384306, 4432: 2384628}
[2025-10-12 13:13:13] 2025-10-12 17:12:09,732 | INFO     | --------------------------------------------------
[2025-10-12 13:13:13] 2025-10-12 17:12:09,732 | INFO     | 
[2025-10-12 13:13:13] 2025-10-12 17:12:09,732 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:13:13] 2025-10-12 17:12:09,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,759 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:13:13] 2025-10-12 17:12:09,759 | INFO     | job 6839928734 has completed (purged errors)
[2025-10-12 13:13:13] 2025-10-12 17:12:09,759 | INFO     | overall cleanup function is called
[2025-10-12 13:13:13] 2025-10-12 17:12:10,767 | INFO     | --- collectZombieJob: --- 10, [17628]
[2025-10-12 13:13:13] 2025-10-12 17:12:10,767 | INFO     | zombie collector waiting for pid 17628
[2025-10-12 13:13:13] 2025-10-12 17:12:10,767 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:13:13] 2025-10-12 17:12:10,768 | INFO     | collected zombie processes
[2025-10-12 13:13:13] 2025-10-12 17:12:10,768 | INFO     | will attempt to kill all subprocesses of pid=17628
[2025-10-12 13:13:13] 2025-10-12 17:12:10,859 | INFO     | process IDs to be killed: [17628] (in reverse order)
[2025-10-12 13:13:13] 2025-10-12 17:12:10,909 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:13:13] 2025-10-12 17:12:10,910 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:13:13] 2025-10-12 17:12:10,913 | INFO     | did not find any defunct processes belonging to 17628
[2025-10-12 13:13:13] 2025-10-12 17:12:10,916 | INFO     | did not find any defunct processes belonging to 17628
[2025-10-12 13:13:13] 2025-10-12 17:12:10,916 | INFO     | ready for new job
[2025-10-12 13:13:13] 2025-10-12 17:12:10,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:13:13] 2025-10-12 17:12:10,917 | INFO     | ***************************************
[2025-10-12 13:13:13] 2025-10-12 17:12:10,918 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:13:13] 2025-10-12 17:12:10,918 | INFO     | ***************************************
[2025-10-12 13:13:13] 2025-10-12 17:12:10,918 | INFO     | 
[2025-10-12 13:13:13] 2025-10-12 17:12:10,918 | INFO     | architecture information:
[2025-10-12 13:13:13] 2025-10-12 17:12:10,919 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:13:13] 2025-10-12 17:12:10,933 | INFO     | cat /etc/os-release:
[2025-10-12 13:13:13] NAME="CentOS Linux"
[2025-10-12 13:13:13] VERSION="7 (Core)"
[2025-10-12 13:13:13] ID="centos"
[2025-10-12 13:13:13] ID_LIKE="rhel fedora"
[2025-10-12 13:13:13] VERSION_ID="7"
[2025-10-12 13:13:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:13:13] ANSI_COLOR="0;31"
[2025-10-12 13:13:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:13:13] HOME_URL="https://www.centos.org/"
[2025-10-12 13:13:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:13:13] 
[2025-10-12 13:13:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:13:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:13:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:13:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:13:13] 
[2025-10-12 13:13:13] 2025-10-12 17:12:10,933 | INFO     | ***************************************
[2025-10-12 13:13:13] 2025-10-12 17:12:11,436 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:13:13] 2025-10-12 17:12:11,451 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-12 13:13:13] 2025-10-12 17:12:11,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:13:13] 2025-10-12 17:12:11,452 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:13:13] 2025-10-12 17:12:11,452 | INFO     | update_server=False
[2025-10-12 13:13:13] 2025-10-12 17:12:11,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:13:13] 2025-10-12 17:12:11,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:13:13] 2025-10-12 17:12:11,452 | INFO     | aborting loop
[2025-10-12 13:13:13] 2025-10-12 17:12:11,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:13:13] 2025-10-12 17:12:11,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:13:13] 2025-10-12 17:12:11,736 | INFO     | all data control threads have been joined
[2025-10-12 13:13:13] 2025-10-12 17:12:11,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:13:13] 2025-10-12 17:12:12,008 | INFO     | all job control threads have been joined
[2025-10-12 13:13:13] 2025-10-12 17:12:12,457 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,458 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,458 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,717 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,741 | INFO     | [data] control thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,856 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,873 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:12,900 | INFO     | all payload control threads have been joined
[2025-10-12 13:13:13] 2025-10-12 17:12:13,014 | INFO     | [job] control thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,216 | INFO     | [job] validate thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,459 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,489 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,496 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,505 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,827 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:13,906 | INFO     | [payload] control thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:15,933 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:13:13] 2025-10-12 17:12:41,827 | INFO     | PID=11156 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:13:13] 2025-10-12 17:12:41,827 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:13:13] 2025-10-12 17:12:41,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:13:13] 2025-10-12 17:12:41,828 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:13:13] 2025-10-12 17:12:58,650 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 13:13:13] 2025-10-12 17:13:07,952 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:13:13] 2025-10-12 17:13:08,232 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374304966464)>', '<ExcThread(monitor, started 140373263369984)>']
[2025-10-12 13:13:13] 2025-10-12 17:13:08,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:13:13] 2025-10-12 17:13:08,957 | INFO     | [monitor] control thread has ended
[2025-10-12 13:13:13] 2025-10-12 17:13:13,257 | INFO     | all workflow threads have been joined
[2025-10-12 13:13:13] 2025-10-12 17:13:13,257 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:13:13] 2025-10-12 17:13:13,270 | INFO     | traces error code: 0
[2025-10-12 13:13:13] 2025-10-12 17:13:13,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:13:13] 2025-10-12 17:13:13,353 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:13:13] 2025-10-12 17:13:13,357 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:13:13] 2025-10-12 17:13:13,361 [wrapper] pilotpid: 11156
[2025-10-12 13:13:13] 2025-10-12 17:13:13,365 [wrapper] Pilot exit status: 0
[2025-10-12 13:13:13] 2025-10-12 17:13:13,380 [wrapper] pandaids: 6839928734
[2025-10-12 13:13:13] 2025-10-12 17:13:13,428 [wrapper] cleanup supervisor_pilot  6017 11157
[2025-10-12 13:13:13] 2025-10-12 17:13:13,432 [wrapper] Test setup, not cleaning
[2025-10-12 13:13:13] 2025-10-12 17:13:13,436 [wrapper] apfmon messages muted
[2025-10-12 13:13:13] 2025-10-12 17:13:13,440 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:13:13] 2025-10-12 17:13:13,443 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:13:13]  *** Error codes and diagnostics ***
[2025-10-12 13:13:13]     "exeErrorCode": 0,
[2025-10-12 13:13:13]     "exeErrorDiag": "",
[2025-10-12 13:13:13]     "pilotErrorCode": 0,
[2025-10-12 13:13:13]     "pilotErrorDiag": "",
[2025-10-12 13:13:13]  *** Listing of results directory ***
[2025-10-12 13:13:13] total 412680
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:07 queuedata.json
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:10 pilot3.tar.gz
[2025-10-12 13:13:13] -rwx------ 1 boincer umatlas     36292 Oct 12 08:10 runpilot2-wrapper.sh
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:13:13] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:57 run_atlas
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:57 job.xml
[2025-10-12 13:13:13] -rw-r--r-- 2 boincer umatlas 222293578 Oct 12 11:57 EVNT.46676267._003752.pool.root.1
[2025-10-12 13:13:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:57 start_atlas.sh
[2025-10-12 13:13:13] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:57 shared
[2025-10-12 13:13:13] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 11:57 input.tar.gz
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:57 boinc_lockfile
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:57 pandaJob.out
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas    975528 Oct 12 11:57 agis_schedconf.cvmfs.json
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas   1560580 Oct 12 11:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:13:13] drwx------ 5 boincer umatlas      4096 Oct 12 11:58 pilot3
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 13:09 init_data.xml
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas 194316162 Oct 12 13:11 HITS.46676269._077871.pool.root.1
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:11 boinc_task_state.xml
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas      1050 Oct 12 13:11 memory_monitor_summary.json
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas        95 Oct 12 13:11 pilot_heartbeat.json
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas    388625 Oct 12 13:12 log.46676269._077871.job.log.tgz.1
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas      7858 Oct 12 13:12 heartbeat.json
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:13 wrapper_checkpoint.txt
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:13 boinc_mmap_file
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas      4746 Oct 12 13:13 pilotlog.txt
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas    647372 Oct 12 13:13 log.46676269._077871.job.log.1
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas       357 Oct 12 13:13 output.list
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:13 runtime_log
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas   1054720 Oct 12 13:13 result.tar.gz
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 13:13 runtime_log.err
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas       659 Oct 12 13:13 Fw1MDm649R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmWrTMDmzUS5Sn.diag
[2025-10-12 13:13:13] -rw-r--r-- 1 boincer umatlas     22089 Oct 12 13:13 stderr.txt
[2025-10-12 13:13:13] HITS file was successfully produced:
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas 194316162 Oct 12 13:11 shared/HITS.pool.root.1
[2025-10-12 13:13:13]  *** Contents of shared directory: ***
[2025-10-12 13:13:13] total 408460
[2025-10-12 13:13:13] -rw-r--r-- 2 boincer umatlas 222293578 Oct 12 11:57 ATLAS.root_0
[2025-10-12 13:13:13] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:57 start_atlas.sh
[2025-10-12 13:13:13] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 11:57 input.tar.gz
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas 194316162 Oct 12 13:11 HITS.pool.root.1
[2025-10-12 13:13:13] -rw------- 1 boincer umatlas   1054720 Oct 12 13:13 result.tar.gz
13:13:15 (7481): run_atlas exited; CPU time 47588.128742
13:13:15 (7481): called boinc_finish(0)

</stderr_txt>
]]>

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