Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:17:47 (2270625): wrapper (7.7.26015): starting
19:17:47 (2270625): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 19:17:47] Arguments: --nthreads 3
[2025-10-12 19:17:47] Threads: 3
[2025-10-12 19:17:47] Checking for CVMFS
[2025-10-12 19:17:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:17:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:17:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:17:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:17:47] 2.9.2.0 842304 4623 82612 151629 3 57 2626903 36864000 0 130560 0 3741045 99.991 157520 931 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 19:17:47] CVMFS is ok
[2025-10-12 19:17:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:17:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:17:47] Further information can be found at the LHC@home message board.
[2025-10-12 19:17:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:17:47] Checking for apptainer binary...
[2025-10-12 19:17:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:17:47] Running /usr/bin/apptainer --version
[2025-10-12 19:17:47] apptainer version 1.4.1-1.1
[2025-10-12 19:17:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:17:47] thA330a
[2025-10-12 19:17:47] apptainer works
[2025-10-12 19:17:47] Set ATHENA_PROC_NUMBER=3
[2025-10-12 19:17:47] Set ATHENA_CORE_NUMBER=3
[2025-10-12 19:17:47] Starting ATLAS job with PandaID=6841636393
[2025-10-12 19:17:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:28:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | job 6841636393 has completed (purged errors)
[2025-10-12 20:28:05] 2025-10-12 18:27:32,504 | INFO     | overall cleanup function is called
[2025-10-12 20:28:05] 2025-10-12 18:27:32,874 | INFO     | PID=2274351 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:28:05] 2025-10-12 18:27:33,510 | INFO     | --- collectZombieJob: --- 10, [2280786]
[2025-10-12 20:28:05] 2025-10-12 18:27:33,511 | INFO     | zombie collector waiting for pid 2280786
[2025-10-12 20:28:05] 2025-10-12 18:27:33,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:28:05] 2025-10-12 18:27:33,511 | INFO     | collected zombie processes
[2025-10-12 20:28:05] 2025-10-12 18:27:33,511 | INFO     | will attempt to kill all subprocesses of pid=2280786
[2025-10-12 20:28:05] 2025-10-12 18:27:33,558 | INFO     | process IDs to be killed: [2280786] (in reverse order)
[2025-10-12 20:28:05] 2025-10-12 18:27:33,583 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:28:05] 2025-10-12 18:27:33,583 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:28:05] 2025-10-12 18:27:33,585 | INFO     | did not find any defunct processes belonging to 2280786
[2025-10-12 20:28:05] 2025-10-12 18:27:33,586 | INFO     | did not find any defunct processes belonging to 2280786
[2025-10-12 20:28:05] 2025-10-12 18:27:33,586 | INFO     | ready for new job
[2025-10-12 20:28:05] 2025-10-12 18:27:33,586 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:28:05] 2025-10-12 18:27:33,587 | INFO     | ***************************************
[2025-10-12 20:28:05] 2025-10-12 18:27:33,587 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:28:05] 2025-10-12 18:27:33,587 | INFO     | ***************************************
[2025-10-12 20:28:05] 2025-10-12 18:27:33,587 | INFO     | 
[2025-10-12 20:28:05] 2025-10-12 18:27:33,587 | INFO     | architecture information:
[2025-10-12 20:28:05] 2025-10-12 18:27:33,587 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:28:05] 2025-10-12 18:27:33,596 | INFO     | cat /etc/os-release:
[2025-10-12 20:28:05] NAME="CentOS Linux"
[2025-10-12 20:28:05] VERSION="7 (Core)"
[2025-10-12 20:28:05] ID="centos"
[2025-10-12 20:28:05] ID_LIKE="rhel fedora"
[2025-10-12 20:28:05] VERSION_ID="7"
[2025-10-12 20:28:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:28:05] ANSI_COLOR="0;31"
[2025-10-12 20:28:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:28:05] HOME_URL="https://www.centos.org/"
[2025-10-12 20:28:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:28:05] 
[2025-10-12 20:28:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:28:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:28:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:28:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:28:05] 
[2025-10-12 20:28:05] 2025-10-12 18:27:33,596 | INFO     | ***************************************
[2025-10-12 20:28:05] 2025-10-12 18:27:34,100 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | INFO     | sufficient remaining disk space (259375759360 B)
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | INFO     | update_server=False
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:28:05] 2025-10-12 18:27:34,113 | INFO     | aborting loop
[2025-10-12 20:28:05] 2025-10-12 18:27:34,221 | INFO     | all data control threads have been joined
[2025-10-12 20:28:05] 2025-10-12 18:27:34,651 | INFO     | all payload control threads have been joined
[2025-10-12 20:28:05] 2025-10-12 18:27:35,035 | INFO     | all job control threads have been joined
[2025-10-12 20:28:05] 2025-10-12 18:27:35,118 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,118 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,119 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,127 | INFO     | [job] validate thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,136 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,227 | INFO     | [data] control thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:28:05] 2025-10-12 18:27:35,657 | INFO     | [payload] control thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,725 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,788 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:35,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:28:05] 2025-10-12 18:27:36,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:36,040 | INFO     | [job] control thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:36,257 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:36,485 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:36,619 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:37,536 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:40,001 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:28:05] 2025-10-12 18:27:57,959 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:28:05] 2025-10-12 18:27:58,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823761123136)>', '<ExcThread(monitor, started 139823480276736)>']
[2025-10-12 20:28:05] 2025-10-12 18:28:03,567 | INFO     | all workflow threads have been joined
[2025-10-12 20:28:05] 2025-10-12 18:28:03,568 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:28:05] 2025-10-12 18:28:03,568 | INFO     | traces error code: 0
[2025-10-12 20:28:05] 2025-10-12 18:28:03,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:28:05] 2025-10-12 18:28:04,979 | INFO     | PID=2274351 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:28:05] 2025-10-12 18:28:04,979 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:28:05] 2025-10-12 18:28:04,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:28:05] 2025-10-12 18:28:04,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:28:05] 2025-10-12 18:28:04,979 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:28:05] 2025-10-12 18:28:04,979 | INFO     | [monitor] control thread has ended
[2025-10-12 20:28:05] 2025-10-12 18:28:05,027 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:28:05] 2025-10-12 18:28:05,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:28:05] 2025-10-12 18:28:05,032 [wrapper] pilotpid: 2274351
[2025-10-12 20:28:05] 2025-10-12 18:28:05,035 [wrapper] Pilot exit status: 0
[2025-10-12 20:28:05] 2025-10-12 18:28:05,042 [wrapper] pandaids: 6841636393
[2025-10-12 20:28:05] 2025-10-12 18:28:05,058 [wrapper] cleanup supervisor_pilot 2290390 2274352
[2025-10-12 20:28:05] 2025-10-12 18:28:05,060 [wrapper] Test setup, not cleaning
[2025-10-12 20:28:05] 2025-10-12 18:28:05,063 [wrapper] apfmon messages muted
[2025-10-12 20:28:05] 2025-10-12 18:28:05,065 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:28:05] 2025-10-12 18:28:05,067 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:28:05]  *** Error codes and diagnostics ***
[2025-10-12 20:28:05]     "exeErrorCode": 0,
[2025-10-12 20:28:05]     "exeErrorDiag": "",
[2025-10-12 20:28:05]     "pilotErrorCode": 0,
[2025-10-12 20:28:05]     "pilotErrorDiag": "",
[2025-10-12 20:28:05]  *** Listing of results directory ***
[2025-10-12 20:28:05] total 382296
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc    557409 Oct 12 11:51 pilot3.tar.gz
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:10 queuedata.json
[2025-10-12 20:28:05] -rwx------ 1 boinc boinc     36292 Oct 12 12:11 runpilot2-wrapper.sh
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:28:05] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:17 run_atlas
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:17 job.xml
[2025-10-12 20:28:05] -rw-r--r-- 2 boinc boinc 212752800 Oct 12 19:17 EVNT.46376901._003260.pool.root.1
[2025-10-12 20:28:05] -rw-r--r-- 2 boinc boinc    569678 Oct 12 19:17 input.tar.gz
[2025-10-12 20:28:05] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:17 start_atlas.sh
[2025-10-12 20:28:05] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:17 shared
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:17 boinc_setup_complete
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc      6439 Oct 12 19:17 init_data.xml
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:17 boinc_lockfile
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc      2518 Oct 12 19:17 pandaJob.out
[2025-10-12 20:28:05] -rw------- 1 boinc boinc    975528 Oct 12 19:17 agis_schedconf.cvmfs.json
[2025-10-12 20:28:05] -rw------- 1 boinc boinc   1560580 Oct 12 19:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:28:05] drwx------ 5 boinc boinc      4096 Oct 12 19:17 pilot3
[2025-10-12 20:28:05] -rw------- 1 boinc boinc 173120793 Oct 12 20:27 HITS.46376905._136408.pool.root.1
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:27 boinc_task_state.xml
[2025-10-12 20:28:05] -rw------- 1 boinc boinc        95 Oct 12 20:27 pilot_heartbeat.json
[2025-10-12 20:28:05] -rw------- 1 boinc boinc      1018 Oct 12 20:27 memory_monitor_summary.json
[2025-10-12 20:28:05] -rw------- 1 boinc boinc    231854 Oct 12 20:27 log.46376905._136408.job.log.tgz.1
[2025-10-12 20:28:05] -rw------- 1 boinc boinc      7760 Oct 12 20:27 heartbeat.json
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:27 wrapper_checkpoint.txt
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:27 boinc_mmap_file
[2025-10-12 20:28:05] -rw------- 1 boinc boinc       747 Oct 12 20:28 pilotlog.txt
[2025-10-12 20:28:05] -rw------- 1 boinc boinc    621626 Oct 12 20:28 log.46376905._136408.job.log.1
[2025-10-12 20:28:05] -rw------- 1 boinc boinc       357 Oct 12 20:28 output.list
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:28 runtime_log
[2025-10-12 20:28:05] -rw------- 1 boinc boinc    870400 Oct 12 20:28 result.tar.gz
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc      8782 Oct 12 20:28 runtime_log.err
[2025-10-12 20:28:05] -rw------- 1 boinc boinc       659 Oct 12 20:28 O8xMDm0D8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLQjNDmyIWp7m.diag
[2025-10-12 20:28:05] -rw-r--r-- 1 boinc boinc     12362 Oct 12 20:28 stderr.txt
[2025-10-12 20:28:05] HITS file was successfully produced:
[2025-10-12 20:28:05] -rw------- 1 boinc boinc 173120793 Oct 12 20:27 shared/HITS.pool.root.1
[2025-10-12 20:28:05]  *** Contents of shared directory: ***
[2025-10-12 20:28:05] total 378268
[2025-10-12 20:28:05] -rw-r--r-- 2 boinc boinc 212752800 Oct 12 19:17 ATLAS.root_0
[2025-10-12 20:28:05] -rw-r--r-- 2 boinc boinc    569678 Oct 12 19:17 input.tar.gz
[2025-10-12 20:28:05] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:17 start_atlas.sh
[2025-10-12 20:28:05] -rw------- 1 boinc boinc 173120793 Oct 12 20:27 HITS.pool.root.1
[2025-10-12 20:28:05] -rw------- 1 boinc boinc    870400 Oct 12 20:28 result.tar.gz
20:28:06 (2270625): run_atlas exited; CPU time 11888.974351
20:28:06 (2270625): called boinc_finish(0)

</stderr_txt>
]]>

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