Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:19:11 (865900): wrapper (7.7.26015): starting
12:19:11 (865900): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:19:11] Arguments: --nthreads 12
[2025-10-12 12:19:11] Threads: 12
[2025-10-12 12:19:11] Checking for CVMFS
[2025-10-12 12:19:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:19:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:19:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:19:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:19:11] 2.13.2.0 3683012 13018 148364 151625 1 195 37505665 40960001 5432 16776704 0 148475728 99.862 55079827 32592 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:19:11] CVMFS is ok
[2025-10-12 12:19:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:19:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:19:11] Further information can be found at the LHC@home message board.
[2025-10-12 12:19:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:19:11] Checking for apptainer binary...
[2025-10-12 12:19:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:19:11] Running /usr/bin/apptainer --version
[2025-10-12 12:19:11] apptainer version 1.4.3-1.el9
[2025-10-12 12:19:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:19:11] c8-7-4.aglt2.org
[2025-10-12 12:19:11] apptainer works
[2025-10-12 12:19:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:19:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:19:11] Starting ATLAS job with PandaID=6839866939
[2025-10-12 12:19:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:47:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:47:40]  replicas=None
[2025-10-12 12:47:40]  scope=mc23_13p6TeV
[2025-10-12 12:47:40]  status=None
[2025-10-12 12:47:40]  status_code=0
[2025-10-12 12:47:40]  storage_token=
[2025-10-12 12:47:40]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6839866939/log.46676269._076258.job.log.tgz.1
[2025-10-12 12:47:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/c1/log.46676269._076258.job.log.tgz.1
[2025-10-12 12:47:40]  workdir=None
[2025-10-12 12:47:40] ]
[2025-10-12 12:47:40] 2025-10-12 16:47:03,352 | INFO     | transferring file log.46676269._076258.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6839866939/log.46676269._076258.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 12:47:40] 2025-10-12 16:47:03,352 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6839866939/log.46676269._076258.job.log.tgz.1 /tmp/boinchome/slots/8/log.46676269._076258.job
[2025-10-12 12:47:40] 2025-10-12 16:47:03,367 | INFO     | adding to output.list: log.46676269._076258.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/c1/log.46676269._076258.job.log.tg
[2025-10-12 12:47:40] 2025-10-12 16:47:03,367 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:47:40] 2025-10-12 16:47:03,368 | INFO     | summary of transferred files:
[2025-10-12 12:47:40] 2025-10-12 16:47:03,368 | INFO     |  -- lfn=log.46676269._076258.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:47:40] 2025-10-12 16:47:03,368 | INFO     | stage-out finished correctly
[2025-10-12 12:47:40] 2025-10-12 16:47:03,420 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:47:40] 2025-10-12 16:47:04,228 | INFO     | time since job start (1665s) is within the limit (172800.0s)
[2025-10-12 12:47:40] 2025-10-12 16:47:04,286 | INFO     | job 6839866939 has state=finished
[2025-10-12 12:47:40] 2025-10-12 16:47:04,286 | INFO     | preparing for final server update for job 6839866939 in state='finished'
[2025-10-12 12:47:40] 2025-10-12 16:47:04,327 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 12:47:40] 2025-10-12 16:47:04,328 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:47:40] 2025-10-12 16:47:04,328 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:47:40] 2025-10-12 16:47:04,328 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:47:40] 2025-10-12 16:47:04,328 | INFO     | job 6839866939 has finished - writing final server update
[2025-10-12 12:47:40] 2025-10-12 16:47:04,328 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:47:40] 2025-10-12 16:47:04,329 | INFO     | executing command: lscpu
[2025-10-12 12:47:40] 2025-10-12 16:47:04,394 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:47:40] 2025-10-12 16:47:06,234 | INFO     | time since job start (1667s) is within the limit (172800.0s)
[2025-10-12 12:47:40] 2025-10-12 16:47:07,946 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 12:47:40] 2025-10-12 16:47:07,951 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3568.144062499992
[2025-10-12 12:47:40] 2025-10-12 16:47:07,978 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6839866939/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:47:40] 2025-10-12 16:47:07,979 | INFO     | extracted standard info from prmon json
[2025-10-12 12:47:40] 2025-10-12 16:47:07,979 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:47:40] 2025-10-12 16:47:07,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:47:40] 2025-10-12 16:47:07,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:47:40] 2025-10-12 16:47:07,979 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:47:40] 2025-10-12 16:47:07,980 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:47:40] 2025-10-12 16:47:07,980 | INFO     | sum of square deviations: 2474465.0
[2025-10-12 12:47:40] 2025-10-12 16:47:07,980 | INFO     | sum of deviations: -119250486.0
[2025-10-12 12:47:40] 2025-10-12 16:47:07,980 | INFO     | mean x: 1760286865.5
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | mean y: 2403907.4
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | -- intersect: 84834908796.45345
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | intersect: 84834908796.45345
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | chi2: 0.0015405092180702175
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | -- intersect: 84834908796.45345
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | current memory leak: -48.19 B/s (using 20 data points, chi2=0.00)
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | could have reported an average CPU frequency of 3532 MHz (4 samples)
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | ..............................
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | . Timing measurements:
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | . get job = 0 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | . initial setup = 3 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,981 | INFO     | . payload setup = 3 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,982 | INFO     | . stage-in = 0 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,982 | INFO     | . payload execution = 1641 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,982 | INFO     | . stage-out = 0 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,982 | INFO     | . log creation = 0 s
[2025-10-12 12:47:40] 2025-10-12 16:47:07,982 | INFO     | ..............................
[2025-10-12 12:47:40] 2025-10-12 16:47:08,036 | INFO     | 
[2025-10-12 12:47:40] 2025-10-12 16:47:08,036 | INFO     | job summary report
[2025-10-12 12:47:40] 2025-10-12 16:47:08,036 | INFO     | --------------------------------------------------
[2025-10-12 12:47:40] 2025-10-12 16:47:08,036 | INFO     | PanDA job id: 6839866939
[2025-10-12 12:47:40] 2025-10-12 16:47:08,036 | INFO     | task id: 46676269
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | errors: (none)
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | pilot state: finished 
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | transexitcode: 0
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | exeerrorcode: 0
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | exeerrordiag: 
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | exitcode: 0
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | exitmsg: OK
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | cpuconsumptiontime: 17919 s
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | nevents: 400
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | neventsw: 0
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | pid: 876221
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | pgrp: 876221
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | corecount: 12
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | event service: False
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 1648: 2374014, 1649: 2383012, 1650: 2383068, 1654: 2383390}
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | --------------------------------------------------
[2025-10-12 12:47:40] 2025-10-12 16:47:08,037 | INFO     | 
[2025-10-12 12:47:40] 2025-10-12 16:47:08,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-10-12 12:47:40] 2025-10-12 16:47:08,056 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,057 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | job 6839866939 has completed (purged errors)
[2025-10-12 12:47:40] 2025-10-12 16:47:08,058 | INFO     | overall cleanup function is called
[2025-10-12 12:47:40] 2025-10-12 16:47:08,381 | WARNING  | process 876221 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 12:47:40] 2025-10-12 16:47:08,645 | INFO     | using path: /tmp/boinchome/slots/8/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:47:40] 2025-10-12 16:47:08,986 | INFO     | number of running child processes to parent process 876221: 1
[2025-10-12 12:47:40] 2025-10-12 16:47:08,987 | INFO     | maximum number of monitored processes: 6
[2025-10-12 12:47:40] 2025-10-12 16:47:08,987 | INFO     | aborting job monitoring since job object (job id=6839866939) has expired
[2025-10-12 12:47:40] 2025-10-12 16:47:09,067 | INFO     | --- collectZombieJob: --- 10, [876221]
[2025-10-12 12:47:40] 2025-10-12 16:47:09,067 | INFO     | zombie collector waiting for pid 876221
[2025-10-12 12:47:40] 2025-10-12 16:47:09,067 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:47:40] 2025-10-12 16:47:09,067 | INFO     | collected zombie processes
[2025-10-12 12:47:40] 2025-10-12 16:47:09,068 | INFO     | will attempt to kill all subprocesses of pid=876221
[2025-10-12 12:47:40] 2025-10-12 16:47:09,402 | INFO     | process IDs to be killed: [876221] (in reverse order)
[2025-10-12 12:47:40] 2025-10-12 16:47:09,518 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:47:40] 2025-10-12 16:47:09,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:47:40] 2025-10-12 16:47:09,534 | INFO     | did not find any defunct processes belonging to 876221
[2025-10-12 12:47:40] 2025-10-12 16:47:09,548 | INFO     | did not find any defunct processes belonging to 876221
[2025-10-12 12:47:40] 2025-10-12 16:47:09,548 | INFO     | ready for new job
[2025-10-12 12:47:40] 2025-10-12 16:47:09,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:47:40] 2025-10-12 16:47:09,549 | INFO     | ***************************************
[2025-10-12 12:47:40] 2025-10-12 16:47:09,549 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:47:40] 2025-10-12 16:47:09,549 | INFO     | ***************************************
[2025-10-12 12:47:40] 2025-10-12 16:47:09,549 | INFO     | 
[2025-10-12 12:47:40] 2025-10-12 16:47:09,567 | INFO     | architecture information:
[2025-10-12 12:47:40] 2025-10-12 16:47:09,567 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:47:40] 2025-10-12 16:47:09,582 | INFO     | cat /etc/os-release:
[2025-10-12 12:47:40] NAME="CentOS Linux"
[2025-10-12 12:47:40] VERSION="7 (Core)"
[2025-10-12 12:47:40] ID="centos"
[2025-10-12 12:47:40] ID_LIKE="rhel fedora"
[2025-10-12 12:47:40] VERSION_ID="7"
[2025-10-12 12:47:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:47:40] ANSI_COLOR="0;31"
[2025-10-12 12:47:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:47:40] HOME_URL="https://www.centos.org/"
[2025-10-12 12:47:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:47:40] 
[2025-10-12 12:47:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:47:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:47:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:47:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:47:40] 
[2025-10-12 12:47:40] 2025-10-12 16:47:09,583 | INFO     | ***************************************
[2025-10-12 12:47:40] 2025-10-12 16:47:10,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-10-12 12:47:40] 2025-10-12 16:47:10,101 | INFO     | sufficient remaining disk space (167388381184 B)
[2025-10-12 12:47:40] 2025-10-12 16:47:10,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:47:40] 2025-10-12 16:47:10,102 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:47:40] 2025-10-12 16:47:10,102 | INFO     | update_server=False
[2025-10-12 12:47:40] 2025-10-12 16:47:10,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:47:40] 2025-10-12 16:47:10,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:47:40] 2025-10-12 16:47:10,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:47:40] 2025-10-12 16:47:10,103 | INFO     | aborting loop
[2025-10-12 12:47:40] 2025-10-12 16:47:10,357 | INFO     | all data control threads have been joined
[2025-10-12 12:47:40] 2025-10-12 16:47:10,379 | INFO     | all job control threads have been joined
[2025-10-12 12:47:40] 2025-10-12 16:47:10,825 | INFO     | all payload control threads have been joined
[2025-10-12 12:47:40] 2025-10-12 16:47:11,107 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,108 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,274 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,363 | INFO     | [data] control thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,385 | INFO     | [job] control thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:47:40] 2025-10-12 16:47:11,830 | INFO     | [payload] control thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,871 | INFO     | [job] validate thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,900 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:11,971 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:12,061 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:12,082 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:12,409 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:13,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:47:40] 2025-10-12 16:47:13,436 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:14,051 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:14,107 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:20,961 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:47:40] 2025-10-12 16:47:21,763 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:47:40] 2025-10-12 16:47:21,966 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:47:40] 2025-10-12 16:47:23,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140174075111232)>', '<ExcThread(monitor, started 140173354456832)>']
[2025-10-12 12:47:40] 2025-10-12 16:47:28,556 | INFO     | all workflow threads have been joined
[2025-10-12 12:47:40] 2025-10-12 16:47:28,556 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:47:40] 2025-10-12 16:47:28,557 | INFO     | traces error code: 0
[2025-10-12 12:47:40] 2025-10-12 16:47:28,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:47:40] 2025-10-12 16:47:39,747 | INFO     | PID=869608 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | INFO     | .. there are 10 such processes running
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 12:47:40] 2025-10-12 16:47:39,748 | INFO     | [monitor] control thread has ended
[2025-10-12 12:47:40] 2025-10-12 16:47:39,867 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:47:40] 2025-10-12 16:47:39,870 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:47:40] 2025-10-12 16:47:39,872 [wrapper] pilotpid: 869608
[2025-10-12 12:47:40] 2025-10-12 16:47:39,874 [wrapper] Pilot exit status: 0
[2025-10-12 12:47:40] 2025-10-12 16:47:39,882 [wrapper] pandaids: 6839866939
[2025-10-12 12:47:40] 2025-10-12 16:47:39,967 [wrapper] cleanup supervisor_pilot 1008639 869609
[2025-10-12 12:47:40] 2025-10-12 16:47:39,969 [wrapper] Test setup, not cleaning
[2025-10-12 12:47:40] 2025-10-12 16:47:39,972 [wrapper] apfmon messages muted
[2025-10-12 12:47:40] 2025-10-12 16:47:39,974 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:47:40] 2025-10-12 16:47:39,976 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:47:40]  *** Error codes and diagnostics ***
[2025-10-12 12:47:40]     "exeErrorCode": 0,
[2025-10-12 12:47:40]     "exeErrorDiag": "",
[2025-10-12 12:47:40]     "pilotErrorCode": 0,
[2025-10-12 12:47:40]     "pilotErrorDiag": "",
[2025-10-12 12:47:40]  *** Listing of results directory ***
[2025-10-12 12:47:40] total 406540
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 12:47:40] -rwx------. 1 boincer umatlas     36292 Oct 12 06:50 runpilot2-wrapper.sh
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 06:50 queuedata.json
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:47:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:19 run_atlas
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:19 job.xml
[2025-10-12 12:47:40] -rw-r--r--. 2 boincer umatlas 220685596 Oct 12 12:19 EVNT.46676267._003629.pool.root.1
[2025-10-12 12:47:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:19 start_atlas.sh
[2025-10-12 12:47:40] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:19 shared
[2025-10-12 12:47:40] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 12:19 input.tar.gz
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:19 boinc_lockfile
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:19 pandaJob.out
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas    975528 Oct 12 12:19 agis_schedconf.cvmfs.json
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:19 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:47:40] drwx------. 5 boincer umatlas      4096 Oct 12 12:19 pilot3
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas       529 Oct 12 12:46 boinc_task_state.xml
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas 190455461 Oct 12 12:46 HITS.46676269._076258.pool.root.1
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas        95 Oct 12 12:46 pilot_heartbeat.json
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas      1029 Oct 12 12:46 memory_monitor_summary.json
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas    349534 Oct 12 12:47 log.46676269._076258.job.log.tgz.1
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas      7771 Oct 12 12:47 heartbeat.json
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas      7164 Oct 12 12:47 init_data.xml
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 12:47 boinc_mmap_file
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas        27 Oct 12 12:47 wrapper_checkpoint.txt
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas       892 Oct 12 12:47 pilotlog.txt
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas    278588 Oct 12 12:47 log.46676269._076258.job.log.1
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas       357 Oct 12 12:47 output.list
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas       620 Oct 12 12:47 runtime_log
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas    645120 Oct 12 12:47 result.tar.gz
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas       647 Oct 12 12:47 SB6MDmyp8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTUjNDmntFHXo.diag
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas      8695 Oct 12 12:47 runtime_log.err
[2025-10-12 12:47:40] -rw-r--r--. 1 boincer umatlas     21756 Oct 12 12:47 stderr.txt
[2025-10-12 12:47:40] HITS file was successfully produced:
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas 190455461 Oct 12 12:46 shared/HITS.pool.root.1
[2025-10-12 12:47:40]  *** Contents of shared directory: ***
[2025-10-12 12:47:40] total 402720
[2025-10-12 12:47:40] -rw-r--r--. 2 boincer umatlas 220685596 Oct 12 12:19 ATLAS.root_0
[2025-10-12 12:47:40] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:19 start_atlas.sh
[2025-10-12 12:47:40] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 12:19 input.tar.gz
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas 190455461 Oct 12 12:46 HITS.pool.root.1
[2025-10-12 12:47:40] -rw-------. 1 boincer umatlas    645120 Oct 12 12:47 result.tar.gz
12:47:41 (865900): run_atlas exited; CPU time 17954.697683
12:47:41 (865900): called boinc_finish(0)

</stderr_txt>
]]>

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