Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
21:33:14 (2340947): wrapper (7.7.26015): starting
21:33:14 (2340947): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:33:14] Arguments: --nthreads 12
[2025-10-12 21:33:14] Threads: 12
[2025-10-12 21:33:14] Checking for CVMFS
[2025-10-12 21:33:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:33:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:33:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:33:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:33:15] 2.13.2.0 4637 2025 51116 151635 2 57 3037372 4096001 917 130560 0 6559947 99.997 74948 479 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 21:33:15] CVMFS is ok
[2025-10-12 21:33:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:33:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 21:33:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 21:33:15] Further information can be found at the LHC@home message board.
[2025-10-12 21:33:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:33:15] Checking for apptainer binary...
[2025-10-12 21:33:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:33:15] Running /usr/bin/apptainer --version
[2025-10-12 21:33:15] apptainer version 1.4.3
[2025-10-12 21:33:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:33:15] JM4
[2025-10-12 21:33:15] apptainer works
[2025-10-12 21:33:15] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:33:15] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:33:15] Starting ATLAS job with PandaID=6839987900
[2025-10-12 21:33:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:11:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:11:30] 2025-10-12 20:10:43,050 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839987900/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,050 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839987900/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,051 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 22:11:30] 2025-10-12 20:10:43,051 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 22:11:30] 2025-10-12 20:10:43,051 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4279148 B
[2025-10-12 22:11:30] 2025-10-12 20:10:43,051 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15558 B
[2025-10-12 22:11:30] 2025-10-12 20:10:43,051 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-12 22:11:30] 2025-10-12 20:10:43,063 | INFO     | sufficient remaining disk space (71571603456 B)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,064 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,064 | INFO     | size of work directory /var/lib/boinc-client/slots/0/PanDA_Pilot-6839987900: 4560565 B (within 2537553920 B limit)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,064 | INFO     | pfn file=/var/lib/boinc-client/slots/0/PanDA_Pilot-6839987900/HITS.46676269._078244.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,064 | INFO     | total size of present files: 0 B (workdir size: 4560565 B)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,065 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-6839987900/HITS.46676269._078244.pool.root.1 since it does not exist
[2025-10-12 22:11:30] 2025-10-12 20:10:43,146 | INFO     | number of running child processes to parent process 2353402: 1
[2025-10-12 22:11:30] 2025-10-12 20:10:43,146 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:11:30] 2025-10-12 20:10:43,661 | INFO     | job 6839987900 has state=finished
[2025-10-12 22:11:30] 2025-10-12 20:10:43,662 | INFO     | preparing for final server update for job 6839987900 in state='finished'
[2025-10-12 22:11:30] 2025-10-12 20:10:43,662 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,662 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,662 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:11:30] 2025-10-12 20:10:43,662 | INFO     | job 6839987900 has finished - writing final server update
[2025-10-12 22:11:30] 2025-10-12 20:10:43,662 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:11:30] 2025-10-12 20:10:43,663 | INFO     | executing command: lscpu
[2025-10-12 22:11:30] 2025-10-12 20:10:43,685 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:11:30] 2025-10-12 20:10:44,475 | INFO     | time since job start (2242s) is within the limit (172800.0s)
[2025-10-12 22:11:30] 2025-10-12 20:10:45,648 | INFO     | monitor loop #172: job 0:6839987900 is in state 'finished'
[2025-10-12 22:11:30] 2025-10-12 20:10:45,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:11:30] 2025-10-12 20:10:46,481 | INFO     | time since job start (2244s) is within the limit (172800.0s)
[2025-10-12 22:11:30] 2025-10-12 20:10:47,596 | INFO     | PID=2344764 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:11:30] 2025-10-12 20:10:47,596 | INFO     | .. there are 2 such processes running
[2025-10-12 22:11:30] 2025-10-12 20:10:48,151 | INFO     | monitor loop #173: job 0:6839987900 is in state 'finished'
[2025-10-12 22:11:30] 2025-10-12 20:10:48,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,596 | INFO     | time since job start (2246s) is within the limit (172800.0s)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,866 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:11:30] 2025-10-12 20:10:48,869 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3674.692833333334
[2025-10-12 22:11:30] 2025-10-12 20:10:48,872 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839987900/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,872 | INFO     | extracted standard info from prmon json
[2025-10-12 22:11:30] 2025-10-12 20:10:48,872 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:11:30] 2025-10-12 20:10:48,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:11:30] 2025-10-12 20:10:48,873 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:11:30] 2025-10-12 20:10:48,873 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:11:30] 2025-10-12 20:10:48,873 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | sum of square deviations: 8362947.5
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | sum of deviations: -532593318.00000006
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | mean x: 1760298811.5
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | mean y: 2924041.6
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | -- intersect: 112107344724.40851
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | intersect: 112107344724.40851
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | chi2: 0.012008030592336462
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | -- intersect: 112107344724.40851
[2025-10-12 22:11:30] 2025-10-12 20:10:48,874 | INFO     | current memory leak: -63.68 B/s (using 30 data points, chi2=0.01)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | could have reported an average CPU frequency of 3915 MHz (5 samples)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | ..............................
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . Timing measurements:
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . get job = 0 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . initial setup = 1 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . payload setup = 3 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . stage-in = 0 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . payload execution = 2219 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . stage-out = 0 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | . log creation = 0 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,875 | INFO     | ..............................
[2025-10-12 22:11:30] 2025-10-12 20:10:48,936 | INFO     | 
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | job summary report
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | --------------------------------------------------
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | PanDA job id: 6839987900
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | task id: 46676269
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | errors: (none)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | pilot state: finished 
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | transexitcode: 0
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | exeerrorcode: 0
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | exeerrordiag: 
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | exitcode: 0
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | exitmsg: OK
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | cpuconsumptiontime: 24310 s
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | nevents: 400
[2025-10-12 22:11:30] 2025-10-12 20:10:48,937 | INFO     | neventsw: 0
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | pid: 2353402
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | pgrp: 2353402
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | corecount: 12
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | event service: False
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | sizes: {0: 2348864, 3: 2349126, 11: 2349154, 2222: 2374260, 2223: 2383272, 2226: 2383328, 2233: 2383710}
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | --------------------------------------------------
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | 
[2025-10-12 22:11:30] 2025-10-12 20:10:48,938 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-12 22:11:30] 2025-10-12 20:10:48,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,953 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,954 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,954 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,954 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:11:30] 2025-10-12 20:10:48,954 | INFO     | job 6839987900 has completed (purged errors)
[2025-10-12 22:11:30] 2025-10-12 20:10:48,954 | INFO     | overall cleanup function is called
[2025-10-12 22:11:30] 2025-10-12 20:10:49,962 | INFO     | --- collectZombieJob: --- 10, [2353402]
[2025-10-12 22:11:30] 2025-10-12 20:10:49,962 | INFO     | zombie collector waiting for pid 2353402
[2025-10-12 22:11:30] 2025-10-12 20:10:49,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:11:30] 2025-10-12 20:10:49,962 | INFO     | collected zombie processes
[2025-10-12 22:11:30] 2025-10-12 20:10:49,962 | INFO     | will attempt to kill all subprocesses of pid=2353402
[2025-10-12 22:11:30] 2025-10-12 20:10:50,052 | INFO     | process IDs to be killed: [2353402] (in reverse order)
[2025-10-12 22:11:30] 2025-10-12 20:10:50,091 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:11:30] 2025-10-12 20:10:50,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:11:30] 2025-10-12 20:10:50,094 | INFO     | did not find any defunct processes belonging to 2353402
[2025-10-12 22:11:30] 2025-10-12 20:10:50,097 | INFO     | did not find any defunct processes belonging to 2353402
[2025-10-12 22:11:30] 2025-10-12 20:10:50,097 | INFO     | ready for new job
[2025-10-12 22:11:30] 2025-10-12 20:10:50,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:11:30] 2025-10-12 20:10:50,098 | INFO     | ***************************************
[2025-10-12 22:11:30] 2025-10-12 20:10:50,098 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:11:30] 2025-10-12 20:10:50,098 | INFO     | ***************************************
[2025-10-12 22:11:30] 2025-10-12 20:10:50,098 | INFO     | 
[2025-10-12 22:11:30] 2025-10-12 20:10:50,099 | INFO     | architecture information:
[2025-10-12 22:11:30] 2025-10-12 20:10:50,099 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:11:30] 2025-10-12 20:10:50,110 | INFO     | cat /etc/os-release:
[2025-10-12 22:11:30] NAME="CentOS Linux"
[2025-10-12 22:11:30] VERSION="7 (Core)"
[2025-10-12 22:11:30] ID="centos"
[2025-10-12 22:11:30] ID_LIKE="rhel fedora"
[2025-10-12 22:11:30] VERSION_ID="7"
[2025-10-12 22:11:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:11:30] ANSI_COLOR="0;31"
[2025-10-12 22:11:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:11:30] HOME_URL="https://www.centos.org/"
[2025-10-12 22:11:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:11:30] 
[2025-10-12 22:11:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:11:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:11:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:11:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:11:30] 
[2025-10-12 22:11:30] 2025-10-12 20:10:50,110 | INFO     | ***************************************
[2025-10-12 22:11:30] 2025-10-12 20:10:50,613 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-12 22:11:30] 2025-10-12 20:10:50,624 | INFO     | sufficient remaining disk space (71571603456 B)
[2025-10-12 22:11:30] 2025-10-12 20:10:50,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:11:30] 2025-10-12 20:10:50,625 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:11:30] 2025-10-12 20:10:50,625 | INFO     | update_server=False
[2025-10-12 22:11:30] 2025-10-12 20:10:50,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:11:30] 2025-10-12 20:10:50,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:11:30] 2025-10-12 20:10:50,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:11:30] 2025-10-12 20:10:50,654 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:11:30] 2025-10-12 20:10:50,654 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:11:30] 2025-10-12 20:10:50,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:11:30] 2025-10-12 20:10:50,654 | INFO     | will abort loop
[2025-10-12 22:11:30] 2025-10-12 20:10:51,156 | INFO     | all payload control threads have been joined
[2025-10-12 22:11:30] 2025-10-12 20:10:51,245 | INFO     | all job control threads have been joined
[2025-10-12 22:11:30] 2025-10-12 20:10:51,258 | INFO     | all data control threads have been joined
[2025-10-12 22:11:30] 2025-10-12 20:10:51,630 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:51,630 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:51,660 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:51,845 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:51,943 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,161 | INFO     | [payload] control thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,250 | INFO     | [job] control thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,261 | INFO     | [data] control thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,306 | INFO     | [job] validate thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,320 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,530 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:11:30] 2025-10-12 20:10:52,628 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,653 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:52,712 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:10:56,618 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:11:01,442 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:11:30] 2025-10-12 20:11:02,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:11:30] 2025-10-12 20:11:21,784 | INFO     | PID=2344764 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:11:30] 2025-10-12 20:11:21,784 | INFO     | .. there are 2 such processes running
[2025-10-12 22:11:30] 2025-10-12 20:11:21,784 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:11:30] 2025-10-12 20:11:21,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:11:30] 2025-10-12 20:11:21,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:11:30] 2025-10-12 20:11:25,224 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:11:30] 2025-10-12 20:11:25,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135417760278336)>', '<ExcThread(monitor, started 135416762070784)>']
[2025-10-12 22:11:30] 2025-10-12 20:11:25,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:11:30] 2025-10-12 20:11:25,804 | INFO     | [monitor] control thread has ended
[2025-10-12 22:11:30] 2025-10-12 20:11:30,756 | INFO     | all workflow threads have been joined
[2025-10-12 22:11:30] 2025-10-12 20:11:30,757 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:11:30] 2025-10-12 20:11:30,757 | INFO     | traces error code: 0
[2025-10-12 22:11:30] 2025-10-12 20:11:30,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:11:30] 2025-10-12 20:11:30,819 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:11:30] 2025-10-12 20:11:30,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:11:30] 2025-10-12 20:11:30,823 [wrapper] pilotpid: 2344764
[2025-10-12 22:11:30] 2025-10-12 20:11:30,825 [wrapper] Pilot exit status: 0
[2025-10-12 22:11:30] 2025-10-12 20:11:30,832 [wrapper] pandaids: 6839987900
[2025-10-12 22:11:30] 2025-10-12 20:11:30,858 [wrapper] cleanup supervisor_pilot 2380254 2344765
[2025-10-12 22:11:30] 2025-10-12 20:11:30,860 [wrapper] Test setup, not cleaning
[2025-10-12 22:11:30] 2025-10-12 20:11:30,862 [wrapper] apfmon messages muted
[2025-10-12 22:11:30] 2025-10-12 20:11:30,864 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:11:30] 2025-10-12 20:11:30,866 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:11:30]  *** Error codes and diagnostics ***
[2025-10-12 22:11:30]     "exeErrorCode": 0,
[2025-10-12 22:11:30]     "exeErrorDiag": "",
[2025-10-12 22:11:30]     "pilotErrorCode": 0,
[2025-10-12 22:11:30]     "pilotErrorDiag": "",
[2025-10-12 22:11:30]  *** Listing of results directory ***
[2025-10-12 22:11:30] total 414548
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc    557409 oct 12 14:35 pilot3.tar.gz
[2025-10-12 22:11:30] -rwx------ 1 boinc boinc     36292 oct 12 14:38 runpilot2-wrapper.sh
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc      5112 oct 12 14:38 queuedata.json
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc       100 oct 12 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:11:30] -rwxr-xr-x 1 boinc boinc      7986 oct 12 21:33 run_atlas
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc       105 oct 12 21:33 job.xml
[2025-10-12 22:11:30] -rw-r--r-- 2 boinc boinc     15120 oct 12 21:33 start_atlas.sh
[2025-10-12 22:11:30] drwxrwx--x 1 boinc boinc        76 oct 12 21:33 shared
[2025-10-12 22:11:30] -rw-r--r-- 2 boinc boinc    569677 oct 12 21:33 input.tar.gz
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc      9255 oct 12 21:33 init_data.xml
[2025-10-12 22:11:30] -rw-r--r-- 2 boinc boinc 221034256 oct 12 21:33 EVNT.46676267._003791.pool.root.1
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc         0 oct 12 21:33 boinc_setup_complete
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc         0 oct 12 21:33 boinc_lockfile
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc      2550 oct 12 21:33 pandaJob.out
[2025-10-12 22:11:30] -rw------- 1 boinc boinc    975536 oct 12 21:33 agis_schedconf.cvmfs.json
[2025-10-12 22:11:30] -rw------- 1 boinc boinc   1560580 oct 12 21:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:11:30] drwx------ 1 boinc boinc       414 oct 12 21:33 pilot3
[2025-10-12 22:11:30] -rw------- 1 boinc boinc 198134539 oct 12 22:10 HITS.46676269._078244.pool.root.1
[2025-10-12 22:11:30] -rw------- 1 boinc boinc      1016 oct 12 22:10 memory_monitor_summary.json
[2025-10-12 22:11:30] -rw------- 1 boinc boinc    353632 oct 12 22:10 log.46676269._078244.job.log.tgz.1
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc       529 oct 12 22:10 boinc_task_state.xml
[2025-10-12 22:11:30] -rw------- 1 boinc boinc        95 oct 12 22:10 pilot_heartbeat.json
[2025-10-12 22:11:30] -rw------- 1 boinc boinc      7729 oct 12 22:10 heartbeat.json
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc      8192 oct 12 22:11 boinc_mmap_file
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc        27 oct 12 22:11 wrapper_checkpoint.txt
[2025-10-12 22:11:30] -rw------- 1 boinc boinc      5088 oct 12 22:11 pilotlog.txt
[2025-10-12 22:11:30] -rw------- 1 boinc boinc    366715 oct 12 22:11 log.46676269._078244.job.log.1
[2025-10-12 22:11:30] -rw------- 1 boinc boinc       357 oct 12 22:11 output.list
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc       620 oct 12 22:11 runtime_log
[2025-10-12 22:11:30] -rw------- 1 boinc boinc    737280 oct 12 22:11 result.tar.gz
[2025-10-12 22:11:30] -rw------- 1 boinc boinc       636 oct 12 22:11 YItMDm8VAS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmStTMDmYZryum.diag
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc      8731 oct 12 22:11 runtime_log.err
[2025-10-12 22:11:30] -rw-r--r-- 1 boinc boinc     22555 oct 12 22:11 stderr.txt
[2025-10-12 22:11:30] HITS file was successfully produced:
[2025-10-12 22:11:30] -rw------- 1 boinc boinc 198134539 oct 12 22:10 shared/HITS.pool.root.1
[2025-10-12 22:11:30]  *** Contents of shared directory: ***
[2025-10-12 22:11:30] total 410644
[2025-10-12 22:11:30] -rw-r--r-- 2 boinc boinc     15120 oct 12 21:33 start_atlas.sh
[2025-10-12 22:11:30] -rw-r--r-- 2 boinc boinc    569677 oct 12 21:33 input.tar.gz
[2025-10-12 22:11:30] -rw-r--r-- 2 boinc boinc 221034256 oct 12 21:33 ATLAS.root_0
[2025-10-12 22:11:30] -rw------- 1 boinc boinc 198134539 oct 12 22:10 HITS.pool.root.1
[2025-10-12 22:11:30] -rw------- 1 boinc boinc    737280 oct 12 22:11 result.tar.gz
22:11:32 (2340947): run_atlas exited; CPU time 24320.873806
22:11:32 (2340947): called boinc_finish(0)

</stderr_txt>
]]>

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