Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:52:09 (8273): wrapper (7.7.26015): starting
11:52:09 (8273): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:52:09] Arguments: --nthreads 12
[2025-10-12 11:52:09] Threads: 12
[2025-10-12 11:52:09] Checking for CVMFS
[2025-10-12 11:52:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:52:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:52:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:52:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:52:10] 2.11.2.0 28623 215710 103060 151625 0 57 15021451 20275200 1 130560 4 107691116 99.984 12117491 11846 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:52:10] CVMFS is ok
[2025-10-12 11:52:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:52:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:52:10] Further information can be found at the LHC@home message board.
[2025-10-12 11:52:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:52:10] Checking for apptainer binary...
[2025-10-12 11:52:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:52:10] Running /usr/bin/apptainer --version
[2025-10-12 11:52:10] apptainer version 1.3.2-1.el7
[2025-10-12 11:52:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:52:11] c-205-20.aglt2.org
[2025-10-12 11:52:11] apptainer works
[2025-10-12 11:52:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:52:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:52:11] Starting ATLAS job with PandaID=6839987946
[2025-10-12 11:52:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:07:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:07:53]  status=None
[2025-10-12 13:07:53]  status_code=0
[2025-10-12 13:07:53]  storage_token=
[2025-10-12 13:07:53]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839987946/log.46676269._078290.job.log.tgz.1
[2025-10-12 13:07:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/3d/log.46676269._078290.job.log.tgz.1
[2025-10-12 13:07:53]  workdir=None
[2025-10-12 13:07:53] ]
[2025-10-12 13:07:53] 2025-10-12 17:07:12,744 | INFO     | transferring file log.46676269._078290.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839987946/log.46676269._078290.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:07:53] 2025-10-12 17:07:12,744 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839987946/log.46676269._078290.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078290.job
[2025-10-12 13:07:53] 2025-10-12 17:07:12,767 | INFO     | adding to output.list: log.46676269._078290.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/3d/log.46676269._078290.job.log.tg
[2025-10-12 13:07:53] 2025-10-12 17:07:12,768 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:07:53] 2025-10-12 17:07:12,768 | INFO     | summary of transferred files:
[2025-10-12 13:07:53] 2025-10-12 17:07:12,768 | INFO     |  -- lfn=log.46676269._078290.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:07:53] 2025-10-12 17:07:12,768 | INFO     | stage-out finished correctly
[2025-10-12 13:07:53] 2025-10-12 17:07:14,283 | INFO     | time since job start (4488s) is within the limit (172800.0s)
[2025-10-12 13:07:53] 2025-10-12 17:07:15,664 | WARNING  | process 18428 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:07:53] 2025-10-12 17:07:15,664 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839987946/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:07:53] 2025-10-12 17:07:15,753 | INFO     | number of running child processes to parent process 18428: 1
[2025-10-12 13:07:53] 2025-10-12 17:07:15,753 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:07:53] 2025-10-12 17:07:15,951 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:07:53] 2025-10-12 17:07:16,286 | INFO     | time since job start (4490s) is within the limit (172800.0s)
[2025-10-12 13:07:53] 2025-10-12 17:07:17,318 | INFO     | job 6839987946 has state=finished
[2025-10-12 13:07:53] 2025-10-12 17:07:17,319 | INFO     | preparing for final server update for job 6839987946 in state='finished'
[2025-10-12 13:07:53] 2025-10-12 17:07:17,319 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:07:53] 2025-10-12 17:07:17,320 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:07:53] 2025-10-12 17:07:17,320 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:07:53] 2025-10-12 17:07:17,320 | INFO     | job 6839987946 has finished - writing final server update
[2025-10-12 13:07:53] 2025-10-12 17:07:17,320 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:07:53] 2025-10-12 17:07:17,321 | INFO     | executing command: lscpu
[2025-10-12 13:07:53] 2025-10-12 17:07:17,347 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:07:53] 2025-10-12 17:07:18,254 | INFO     | monitor loop #334: job 0:6839987946 is in state 'finished'
[2025-10-12 13:07:53] 2025-10-12 17:07:18,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:07:53] 2025-10-12 17:07:18,288 | INFO     | time since job start (4492s) is within the limit (172800.0s)
[2025-10-12 13:07:53] 2025-10-12 17:07:20,293 | INFO     | time since job start (4494s) is within the limit (172800.0s)
[2025-10-12 13:07:53] 2025-10-12 17:07:20,757 | INFO     | monitor loop #335: job 0:6839987946 is in state 'finished'
[2025-10-12 13:07:53] 2025-10-12 17:07:20,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,058 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:07:53] 2025-10-12 17:07:22,062 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 13:07:53] 2025-10-12 17:07:22,065 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839987946/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,066 | INFO     | extracted standard info from prmon json
[2025-10-12 13:07:53] 2025-10-12 17:07:22,066 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:07:53] 2025-10-12 17:07:22,066 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:07:53] 2025-10-12 17:07:22,066 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:07:53] 2025-10-12 17:07:22,067 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:07:53] 2025-10-12 17:07:22,069 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:07:53] 2025-10-12 17:07:22,069 | INFO     | sum of square deviations: 89127252.5
[2025-10-12 13:07:53] 2025-10-12 17:07:22,069 | INFO     | sum of deviations: -7333125736.0
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | mean x: 1760286662.5
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | mean y: 2793827.4242424243
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | -- intersect: 144833954504.3036
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | intersect: 144833954504.3036
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | chi2: 0.08672290744131257
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | -- intersect: 144833954504.3036
[2025-10-12 13:07:53] 2025-10-12 17:07:22,070 | INFO     | current memory leak: -82.28 B/s (using 66 data points, chi2=0.09)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | ..............................
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | . Timing measurements:
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | . get job = 0 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | . initial setup = 2 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | . payload setup = 6 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | . stage-in = 0 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,071 | INFO     | . payload execution = 4457 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,072 | INFO     | . stage-out = 0 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,072 | INFO     | . log creation = 0 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,072 | INFO     | ..............................
[2025-10-12 13:07:53] 2025-10-12 17:07:22,156 | INFO     | 
[2025-10-12 13:07:53] 2025-10-12 17:07:22,157 | INFO     | job summary report
[2025-10-12 13:07:53] 2025-10-12 17:07:22,157 | INFO     | --------------------------------------------------
[2025-10-12 13:07:53] 2025-10-12 17:07:22,157 | INFO     | PanDA job id: 6839987946
[2025-10-12 13:07:53] 2025-10-12 17:07:22,157 | INFO     | task id: 46676269
[2025-10-12 13:07:53] 2025-10-12 17:07:22,157 | INFO     | errors: (none)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | pilot state: finished 
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | transexitcode: 0
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | exeerrorcode: 0
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | exeerrordiag: 
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | exitcode: 0
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | exitmsg: OK
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | cpuconsumptiontime: 47825 s
[2025-10-12 13:07:53] 2025-10-12 17:07:22,158 | INFO     | nevents: 400
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | neventsw: 0
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | pid: 18428
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | pgrp: 18428
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | corecount: 12
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | event service: False
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4468: 2375252, 4470: 2384250, 4473: 2384306, 4479: 2384628}
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | --------------------------------------------------
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | 
[2025-10-12 13:07:53] 2025-10-12 17:07:22,159 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:07:53] 2025-10-12 17:07:22,183 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,184 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,184 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,184 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,184 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,184 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,184 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,185 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,185 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,185 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,185 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,185 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,185 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,186 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,186 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,186 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:07:53] 2025-10-12 17:07:22,187 | INFO     | job 6839987946 has completed (purged errors)
[2025-10-12 13:07:53] 2025-10-12 17:07:22,187 | INFO     | overall cleanup function is called
[2025-10-12 13:07:53] 2025-10-12 17:07:23,193 | INFO     | --- collectZombieJob: --- 10, [18428]
[2025-10-12 13:07:53] 2025-10-12 17:07:23,193 | INFO     | zombie collector waiting for pid 18428
[2025-10-12 13:07:53] 2025-10-12 17:07:23,193 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:07:53] 2025-10-12 17:07:23,193 | INFO     | collected zombie processes
[2025-10-12 13:07:53] 2025-10-12 17:07:23,193 | INFO     | will attempt to kill all subprocesses of pid=18428
[2025-10-12 13:07:53] 2025-10-12 17:07:23,285 | INFO     | process IDs to be killed: [18428] (in reverse order)
[2025-10-12 13:07:53] 2025-10-12 17:07:23,344 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:07:53] 2025-10-12 17:07:23,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:07:53] 2025-10-12 17:07:23,348 | INFO     | did not find any defunct processes belonging to 18428
[2025-10-12 13:07:53] 2025-10-12 17:07:23,350 | INFO     | did not find any defunct processes belonging to 18428
[2025-10-12 13:07:53] 2025-10-12 17:07:23,350 | INFO     | ready for new job
[2025-10-12 13:07:53] 2025-10-12 17:07:23,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:07:53] 2025-10-12 17:07:23,351 | INFO     | ***************************************
[2025-10-12 13:07:53] 2025-10-12 17:07:23,352 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:07:53] 2025-10-12 17:07:23,352 | INFO     | ***************************************
[2025-10-12 13:07:53] 2025-10-12 17:07:23,352 | INFO     | 
[2025-10-12 13:07:53] 2025-10-12 17:07:23,352 | INFO     | architecture information:
[2025-10-12 13:07:53] 2025-10-12 17:07:23,353 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:07:53] 2025-10-12 17:07:23,367 | INFO     | cat /etc/os-release:
[2025-10-12 13:07:53] NAME="CentOS Linux"
[2025-10-12 13:07:53] VERSION="7 (Core)"
[2025-10-12 13:07:53] ID="centos"
[2025-10-12 13:07:53] ID_LIKE="rhel fedora"
[2025-10-12 13:07:53] VERSION_ID="7"
[2025-10-12 13:07:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:07:53] ANSI_COLOR="0;31"
[2025-10-12 13:07:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:07:53] HOME_URL="https://www.centos.org/"
[2025-10-12 13:07:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:07:53] 
[2025-10-12 13:07:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:07:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:07:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:07:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:07:53] 
[2025-10-12 13:07:53] 2025-10-12 17:07:23,367 | INFO     | ***************************************
[2025-10-12 13:07:53] 2025-10-12 17:07:23,766 [wrapper] supervise_pilot (15 min periods counter: 6)
[2025-10-12 13:07:53] 2025-10-12 17:07:23,870 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:07:53] 2025-10-12 17:07:23,887 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-10-12 13:07:53] 2025-10-12 17:07:23,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:07:53] 2025-10-12 17:07:23,888 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:07:53] 2025-10-12 17:07:23,888 | INFO     | update_server=False
[2025-10-12 13:07:53] 2025-10-12 17:07:23,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:07:53] 2025-10-12 17:07:23,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:07:53] 2025-10-12 17:07:23,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:07:53] 2025-10-12 17:07:24,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:07:53] 2025-10-12 17:07:24,265 | INFO     | aborting loop
[2025-10-12 13:07:53] 2025-10-12 17:07:24,395 | INFO     | all data control threads have been joined
[2025-10-12 13:07:53] 2025-10-12 17:07:24,893 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:24,894 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,007 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,153 | INFO     | all job control threads have been joined
[2025-10-12 13:07:53] 2025-10-12 17:07:25,161 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,169 | INFO     | [job] validate thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,271 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,355 | INFO     | all payload control threads have been joined
[2025-10-12 13:07:53] 2025-10-12 17:07:25,397 | INFO     | [data] control thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,663 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,664 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:25,894 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:26,001 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:26,118 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:26,158 | INFO     | [job] control thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:26,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:26,359 | INFO     | [payload] control thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:26,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:07:53] 2025-10-12 17:07:30,548 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:07:53] 2025-10-12 17:07:33,341 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:07:53] 2025-10-12 17:07:34,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140213705492288)>', '<ExcThread(monitor, started 140213250660096)>']
[2025-10-12 13:07:53] 2025-10-12 17:07:39,651 | INFO     | all workflow threads have been joined
[2025-10-12 13:07:53] 2025-10-12 17:07:39,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:07:53] 2025-10-12 17:07:39,652 | INFO     | traces error code: 0
[2025-10-12 13:07:53] 2025-10-12 17:07:39,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:07:53] 2025-10-12 17:07:53,495 | INFO     | PID=11980 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:07:53] 2025-10-12 17:07:53,496 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:07:53] 2025-10-12 17:07:53,496 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:07:53] 2025-10-12 17:07:53,496 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:07:53] 2025-10-12 17:07:53,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:07:53] 2025-10-12 17:07:53,496 | INFO     | [monitor] control thread has ended
[2025-10-12 13:07:53] 2025-10-12 17:07:53,586 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:07:53] 2025-10-12 17:07:53,589 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:07:53] 2025-10-12 17:07:53,593 [wrapper] pilotpid: 11980
[2025-10-12 13:07:53] 2025-10-12 17:07:53,597 [wrapper] Pilot exit status: 0
[2025-10-12 13:07:53] 2025-10-12 17:07:53,612 [wrapper] pandaids: 6839987946
[2025-10-12 13:07:53] 2025-10-12 17:07:53,652 [wrapper] cleanup supervisor_pilot 17258 11981
[2025-10-12 13:07:53] 2025-10-12 17:07:53,656 [wrapper] Test setup, not cleaning
[2025-10-12 13:07:53] 2025-10-12 17:07:53,660 [wrapper] apfmon messages muted
[2025-10-12 13:07:53] 2025-10-12 17:07:53,664 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:07:53] 2025-10-12 17:07:53,668 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:07:53]  *** Error codes and diagnostics ***
[2025-10-12 13:07:53]     "exeErrorCode": 0,
[2025-10-12 13:07:53]     "exeErrorDiag": "",
[2025-10-12 13:07:53]     "pilotErrorCode": 0,
[2025-10-12 13:07:53]     "pilotErrorDiag": "",
[2025-10-12 13:07:53]  *** Listing of results directory ***
[2025-10-12 13:07:53] total 411416
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:38 queuedata.json
[2025-10-12 13:07:53] -rwx------ 1 boincer umatlas     36292 Oct 12 08:39 runpilot2-wrapper.sh
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:07:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:52 run_atlas
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:52 job.xml
[2025-10-12 13:07:53] -rw-r--r-- 2 boincer umatlas 220390048 Oct 12 11:52 EVNT.46676267._003794.pool.root.1
[2025-10-12 13:07:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:52 start_atlas.sh
[2025-10-12 13:07:53] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:52 shared
[2025-10-12 13:07:53] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 11:52 input.tar.gz
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:52 boinc_lockfile
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:52 pandaJob.out
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas    975528 Oct 12 11:52 agis_schedconf.cvmfs.json
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas   1560580 Oct 12 11:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:07:53] drwx------ 5 boincer umatlas      4096 Oct 12 11:52 pilot3
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 13:00 init_data.xml
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas 194926293 Oct 12 13:06 HITS.46676269._078290.pool.root.1
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:06 boinc_task_state.xml
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas      1049 Oct 12 13:07 memory_monitor_summary.json
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas    383170 Oct 12 13:07 log.46676269._078290.job.log.tgz.1
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas      7858 Oct 12 13:07 heartbeat.json
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:07 boinc_mmap_file
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:07 wrapper_checkpoint.txt
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas        95 Oct 12 13:07 pilot_heartbeat.json
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas       745 Oct 12 13:07 pilotlog.txt
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas    651577 Oct 12 13:07 log.46676269._078290.job.log.1
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas       357 Oct 12 13:07 output.list
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:07 runtime_log
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas   1054720 Oct 12 13:07 result.tar.gz
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 13:07 runtime_log.err
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas       659 Oct 12 13:07 AJPNDm7WAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5njNDmyGETwn.diag
[2025-10-12 13:07:53] -rw-r--r-- 1 boincer umatlas     21989 Oct 12 13:07 stderr.txt
[2025-10-12 13:07:53] HITS file was successfully produced:
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas 194926293 Oct 12 13:06 shared/HITS.pool.root.1
[2025-10-12 13:07:53]  *** Contents of shared directory: ***
[2025-10-12 13:07:53] total 407200
[2025-10-12 13:07:53] -rw-r--r-- 2 boincer umatlas 220390048 Oct 12 11:52 ATLAS.root_0
[2025-10-12 13:07:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:52 start_atlas.sh
[2025-10-12 13:07:53] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 11:52 input.tar.gz
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas 194926293 Oct 12 13:06 HITS.pool.root.1
[2025-10-12 13:07:53] -rw------- 1 boincer umatlas   1054720 Oct 12 13:07 result.tar.gz
13:07:55 (8273): run_atlas exited; CPU time 47799.420787
13:07:55 (8273): called boinc_finish(0)

</stderr_txt>
]]>

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