Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:20 (2118): wrapper (7.7.26015): starting
22:13:20 (2118): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 22:13:20] Arguments: --nthreads 8
[2025-10-12 22:13:20] Threads: 8
[2025-10-12 22:13:20] Checking for CVMFS
[2025-10-12 22:13:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:13:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:13:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:13:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:13:23] 2.11.2.0 15429 107840 134352 151635 1 61 20062741 25165824 4632 130560 0 38632849 99.889 17809287 2604 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 22:13:23] CVMFS is ok
[2025-10-12 22:13:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:13:23] Checking for apptainer binary...
[2025-10-12 22:13:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:13:23] Running /usr/bin/apptainer --version
[2025-10-12 22:13:23] apptainer version 1.3.2-1.el7
[2025-10-12 22:13:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:13:37] cg-vwn283.simple-grid.lan
[2025-10-12 22:13:37] apptainer works
[2025-10-12 22:13:37] Set ATHENA_PROC_NUMBER=8
[2025-10-12 22:13:37] Set ATHENA_CORE_NUMBER=8
[2025-10-12 22:13:38] Starting ATLAS job with PandaID=6839988321
[2025-10-12 22:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:28:33]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:28:33] 2025-10-13 00:27:22,223 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:28:33] 2025-10-13 00:27:22,223 | INFO     | sum of square deviations: 4127772278.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,225 | INFO     | sum of deviations: 45963134122.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,226 | INFO     | mean x: 1760307913.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,226 | INFO     | mean y: 2468395.1223628693
[2025-10-13 02:28:33] 2025-10-13 00:27:22,226 | INFO     | -- intersect: -19598726450.936172
[2025-10-13 02:28:33] 2025-10-13 00:27:22,226 | INFO     | intersect: -19598726450.936172
[2025-10-13 02:28:33] 2025-10-13 00:27:22,226 | INFO     | chi2: 6.06519290475984
[2025-10-13 02:28:33] 2025-10-13 00:27:22,227 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,236 | INFO     | sum of deviations: 60729628297.000015
[2025-10-13 02:28:33] 2025-10-13 00:27:22,236 | INFO     | mean x: 1760307760.5
[2025-10-13 02:28:33] 2025-10-13 00:27:22,237 | INFO     | mean y: 2477039.1120689656
[2025-10-13 02:28:33] 2025-10-13 00:27:22,237 | INFO     | -- intersect: -27606792511.64829
[2025-10-13 02:28:33] 2025-10-13 00:27:22,237 | INFO     | intersect: -27606792511.64829
[2025-10-13 02:28:33] 2025-10-13 00:27:22,237 | INFO     | chi2: 5.347027110141427
[2025-10-13 02:28:33] 2025-10-13 00:27:22,237 | INFO     | current chi2=5.347027110141427 (change=11.840774166553068 %)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,238 | INFO     | right removable region: 231
[2025-10-13 02:28:33] 2025-10-13 00:27:22,238 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,240 | INFO     | sum of deviations: -31592059637.000008
[2025-10-13 02:28:33] 2025-10-13 00:27:22,240 | INFO     | mean x: 1760308065.5
[2025-10-13 02:28:33] 2025-10-13 00:27:22,241 | INFO     | mean y: 2514571.8189655175
[2025-10-13 02:28:33] 2025-10-13 00:27:22,241 | INFO     | -- intersect: 14365089574.64381
[2025-10-13 02:28:33] 2025-10-13 00:27:22,241 | INFO     | intersect: 14365089574.64381
[2025-10-13 02:28:33] 2025-10-13 00:27:22,241 | INFO     | chi2: 1.8495403532411228
[2025-10-13 02:28:33] 2025-10-13 00:27:22,241 | INFO     | current chi2=1.8495403532411228 (change=69.50566317866591 %)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,242 | INFO     | sum of square deviations: 3627000098.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,244 | INFO     | sum of deviations: -60698492372.000015
[2025-10-13 02:28:33] 2025-10-13 00:27:22,244 | INFO     | mean x: 1760308218.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,244 | INFO     | mean y: 2532549.779735683
[2025-10-13 02:28:33] 2025-10-13 00:27:22,244 | INFO     | -- intersect: 29461603974.001667
[2025-10-13 02:28:33] 2025-10-13 00:27:22,244 | INFO     | intersect: 29461603974.001667
[2025-10-13 02:28:33] 2025-10-13 00:27:22,245 | INFO     | chi2: 1.0041229201588142
[2025-10-13 02:28:33] 2025-10-13 00:27:22,245 | INFO     | current chi2=1.0041229201588142 (change=45.709596527634794 %)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,245 | INFO     | sum of square deviations: 3392567795.5
[2025-10-13 02:28:33] 2025-10-13 00:27:22,247 | INFO     | sum of deviations: -58858661246.00001
[2025-10-13 02:28:33] 2025-10-13 00:27:22,248 | INFO     | mean x: 1760308370.5
[2025-10-13 02:28:33] 2025-10-13 00:27:22,248 | INFO     | mean y: 2531318.279279279
[2025-10-13 02:28:33] 2025-10-13 00:27:22,248 | INFO     | -- intersect: 30542641439.346943
[2025-10-13 02:28:33] 2025-10-13 00:27:22,248 | INFO     | intersect: 30542641439.346943
[2025-10-13 02:28:33] 2025-10-13 00:27:22,248 | INFO     | chi2: 0.9891727791355115
[2025-10-13 02:28:33] 2025-10-13 00:27:22,249 | INFO     | current chi2=0.9891727791355115 (change=1.4888755871580122 %)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,249 | INFO     | left removable region: 30
[2025-10-13 02:28:33] 2025-10-13 00:27:22,249 | INFO     | sum of square deviations: 2518000700.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,251 | INFO     | sum of deviations: -22564338407.000008
[2025-10-13 02:28:33] 2025-10-13 00:27:22,251 | INFO     | mean x: 1760308645.0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,257 | INFO     | mean y: 2526937.383084577
[2025-10-13 02:28:33] 2025-10-13 00:27:22,257 | INFO     | -- intersect: 15777026113.077374
[2025-10-13 02:28:33] 2025-10-13 00:27:22,258 | INFO     | intersect: 15777026113.077374
[2025-10-13 02:28:33] 2025-10-13 00:27:22,258 | INFO     | chi2: 0.15928084521140806
[2025-10-13 02:28:33] 2025-10-13 00:27:22,258 | INFO     | -- intersect: 15777026113.077374
[2025-10-13 02:28:33] 2025-10-13 00:27:22,258 | INFO     | current memory leak: -8.96 B/s (using 201 data points, chi2=0.16)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,259 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,259 | INFO     | ..............................
[2025-10-13 02:28:33] 2025-10-13 00:27:22,259 | INFO     | . Timing measurements:
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . get job = 0 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . initial setup = 10 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . payload setup = 143 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . stage-in = 0 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . payload execution = 14582 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . stage-out = 3 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | . log creation = 1 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,260 | INFO     | ..............................
[2025-10-13 02:28:33] 2025-10-13 00:27:22,388 | INFO     | 
[2025-10-13 02:28:33] 2025-10-13 00:27:22,388 | INFO     | job summary report
[2025-10-13 02:28:33] 2025-10-13 00:27:22,388 | INFO     | --------------------------------------------------
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | PanDA job id: 6839988321
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | task id: 46676269
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | errors: (none)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | pilot state: finished 
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | transexitcode: 0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | exeerrorcode: 0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | exeerrordiag: 
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | exitcode: 0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,389 | INFO     | exitmsg: OK
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | cpuconsumptiontime: 54233 s
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | nevents: 400
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | neventsw: 0
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | pid: 12464
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | pgrp: 12464
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | corecount: 8
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | event service: False
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | sizes: {0: 2348687, 1: 2348886, 12: 2348886, 22: 2348914, 33: 2348942, 44: 2348998, 55: 2349154, 65: 2349182, 76: 2349210, 87: 2349556, 97: 2349556, 14730: 2380001
[2025-10-13 02:28:33] 2025-10-13 00:27:22,390 | INFO     | --------------------------------------------------
[2025-10-13 02:28:33] 2025-10-13 00:27:22,391 | INFO     | 
[2025-10-13 02:28:33] 2025-10-13 00:27:22,391 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-10-13 02:28:33] 2025-10-13 00:27:22,895 | INFO     | time since job start (15023s) is within the limit (172800.0s)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | job 6839988321 has completed (purged errors)
[2025-10-13 02:28:33] 2025-10-13 00:27:22,937 | INFO     | overall cleanup function is called
[2025-10-13 02:28:33] 2025-10-13 00:27:23,946 | INFO     | --- collectZombieJob: --- 10, [12464]
[2025-10-13 02:28:33] 2025-10-13 00:27:23,946 | INFO     | zombie collector waiting for pid 12464
[2025-10-13 02:28:33] 2025-10-13 00:27:23,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:28:33] 2025-10-13 00:27:23,947 | INFO     | collected zombie processes
[2025-10-13 02:28:33] 2025-10-13 00:27:23,947 | INFO     | will attempt to kill all subprocesses of pid=12464
[2025-10-13 02:28:33] 2025-10-13 00:27:24,073 | INFO     | process IDs to be killed: [12464] (in reverse order)
[2025-10-13 02:28:33] 2025-10-13 00:27:24,443 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:28:33] 2025-10-13 00:27:24,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:28:33] 2025-10-13 00:27:24,446 | INFO     | did not find any defunct processes belonging to 12464
[2025-10-13 02:28:33] 2025-10-13 00:27:24,450 | INFO     | did not find any defunct processes belonging to 12464
[2025-10-13 02:28:33] 2025-10-13 00:27:24,450 | INFO     | ready for new job
[2025-10-13 02:28:33] 2025-10-13 00:27:24,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:28:33] 2025-10-13 00:27:24,452 | INFO     | ***************************************
[2025-10-13 02:28:33] 2025-10-13 00:27:24,453 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:28:33] 2025-10-13 00:27:24,453 | INFO     | ***************************************
[2025-10-13 02:28:33] 2025-10-13 00:27:24,453 | INFO     | 
[2025-10-13 02:28:33] 2025-10-13 00:27:24,460 | INFO     | pilot is running in a VM
[2025-10-13 02:28:33] 2025-10-13 00:27:24,460 | INFO     | architecture information:
[2025-10-13 02:28:33] 2025-10-13 00:27:24,471 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:28:33] 2025-10-13 00:27:24,543 | INFO     | cat /etc/os-release:
[2025-10-13 02:28:33] NAME="CentOS Linux"
[2025-10-13 02:28:33] VERSION="7 (Core)"
[2025-10-13 02:28:33] ID="centos"
[2025-10-13 02:28:33] ID_LIKE="rhel fedora"
[2025-10-13 02:28:33] VERSION_ID="7"
[2025-10-13 02:28:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:28:33] ANSI_COLOR="0;31"
[2025-10-13 02:28:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:28:33] HOME_URL="https://www.centos.org/"
[2025-10-13 02:28:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:28:33] 
[2025-10-13 02:28:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:28:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:28:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:28:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:28:33] 
[2025-10-13 02:28:33] 2025-10-13 00:27:24,544 | INFO     | ***************************************
[2025-10-13 02:28:33] 2025-10-13 00:27:25,047 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-10-13 02:28:33] 2025-10-13 00:27:25,126 | INFO     | sufficient remaining disk space (494339620864 B)
[2025-10-13 02:28:33] 2025-10-13 00:27:25,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:28:33] 2025-10-13 00:27:25,126 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:28:33] 2025-10-13 00:27:25,126 | INFO     | update_server=False
[2025-10-13 02:28:33] 2025-10-13 00:27:25,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:28:33] 2025-10-13 00:27:25,127 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:28:33] 2025-10-13 00:27:25,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:28:33] 2025-10-13 00:27:25,555 | INFO     | aborting loop
[2025-10-13 02:28:33] 2025-10-13 00:27:25,611 | INFO     | all data control threads have been joined
[2025-10-13 02:28:33] 2025-10-13 00:27:25,734 | INFO     | all payload control threads have been joined
[2025-10-13 02:28:33] 2025-10-13 00:27:26,132 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,214 | INFO     | all job control threads have been joined
[2025-10-13 02:28:33] 2025-10-13 00:27:26,333 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,428 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,553 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,561 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,617 | INFO     | [data] control thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,658 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:26,740 | INFO     | [payload] control thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:28:33] 2025-10-13 00:27:27,112 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,123 | INFO     | [job] validate thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,134 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,165 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,220 | INFO     | [job] control thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,241 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:27,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:28:33] 2025-10-13 00:27:28,412 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:31,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:28:33] 2025-10-13 00:27:54,928 | INFO     | 15036s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 02:28:33] 2025-10-13 00:27:56,064 | INFO     | PID=5897 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 02:28:33] 2025-10-13 00:27:56,064 | INFO     | .. there are 9 such processes running
[2025-10-13 02:28:33] 2025-10-13 00:27:56,071 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:28:33] 2025-10-13 00:27:56,071 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:28:33] 2025-10-13 00:27:56,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:28:33] 2025-10-13 00:28:24,571 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:28:33] 2025-10-13 00:28:25,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900542814016)>', '<ExcThread(monitor, started 139899944552192)>']
[2025-10-13 02:28:33] 2025-10-13 00:28:26,250 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:28:33] 2025-10-13 00:28:26,250 | INFO     | [monitor] control thread has ended
[2025-10-13 02:28:33] 2025-10-13 00:28:30,541 | INFO     | all workflow threads have been joined
[2025-10-13 02:28:33] 2025-10-13 00:28:30,541 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:28:33] 2025-10-13 00:28:30,542 | INFO     | traces error code: 0
[2025-10-13 02:28:33] 2025-10-13 00:28:30,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:28:33] 2025-10-13 00:28:30,756 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:28:33] 2025-10-13 00:28:30,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:28:33] 2025-10-13 00:28:30,825 [wrapper] pilotpid: 5897
[2025-10-13 02:28:33] 2025-10-13 00:28:30,878 [wrapper] Pilot exit status: 0
[2025-10-13 02:28:33] 2025-10-13 00:28:31,346 [wrapper] pandaids: 6839988321
[2025-10-13 02:28:33] 2025-10-13 00:28:32,048 [wrapper] cleanup supervisor_pilot 22074 5898
[2025-10-13 02:28:33] 2025-10-13 00:28:32,063 [wrapper] Test setup, not cleaning
[2025-10-13 02:28:33] 2025-10-13 00:28:32,066 [wrapper] apfmon messages muted
[2025-10-13 02:28:33] 2025-10-13 00:28:32,071 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:28:33] 2025-10-13 00:28:32,074 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:28:33]  *** Error codes and diagnostics ***
[2025-10-13 02:28:33]     "exeErrorCode": 0,
[2025-10-13 02:28:33]     "exeErrorDiag": "",
[2025-10-13 02:28:33]     "pilotErrorCode": 0,
[2025-10-13 02:28:33]     "pilotErrorDiag": "",
[2025-10-13 02:28:33]  *** Listing of results directory ***
[2025-10-13 02:28:33] total 411736
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc    557409 Oct 12 14:35 pilot3.tar.gz
[2025-10-13 02:28:33] -rwx------. 1 boinc boinc     36292 Oct 12 14:43 runpilot2-wrapper.sh
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc      5112 Oct 12 14:43 queuedata.json
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc       100 Oct 12 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:28:33] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 22:13 run_atlas
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc       105 Oct 12 22:13 job.xml
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc      6383 Oct 12 22:13 init_data.xml
[2025-10-13 02:28:33] -rw-r--r--. 2 boinc boinc 219801625 Oct 12 22:13 EVNT.46676267._003804.pool.root.1
[2025-10-13 02:28:33] -rw-r--r--. 2 boinc boinc     15120 Oct 12 22:13 start_atlas.sh
[2025-10-13 02:28:33] drwxrwx--x. 2 boinc boinc        68 Oct 12 22:13 shared
[2025-10-13 02:28:33] -rw-r--r--. 2 boinc boinc    569680 Oct 12 22:13 input.tar.gz
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc         0 Oct 12 22:13 boinc_lockfile
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc      2550 Oct 12 22:13 pandaJob.out
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc    975536 Oct 12 22:16 agis_schedconf.cvmfs.json
[2025-10-13 02:28:33] drwx------. 5 boinc boinc      4096 Oct 12 22:16 pilot3
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc 192984175 Oct 13 02:24 HITS.46676269._078414.pool.root.1
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc       531 Oct 13 02:24 boinc_task_state.xml
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc      1018 Oct 13 02:25 memory_monitor_summary.json
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc   1560580 Oct 13 02:25 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc    458895 Oct 13 02:25 log.46676269._078414.job.log.tgz.1
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc      7783 Oct 13 02:27 heartbeat.json
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc        95 Oct 13 02:27 pilot_heartbeat.json
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc      5000 Oct 13 02:28 pilotlog.txt
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc      8192 Oct 13 02:28 boinc_mmap_file
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc        28 Oct 13 02:28 wrapper_checkpoint.txt
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc   2007874 Oct 13 02:28 log.46676269._078414.job.log.1
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc       357 Oct 13 02:28 output.list
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc       620 Oct 13 02:28 runtime_log
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc   2488320 Oct 13 02:28 result.tar.gz
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc      8717 Oct 13 02:28 runtime_log.err
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc       657 Oct 13 02:28 FkzMDmCbAS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6tTMDmP18dQm.diag
[2025-10-13 02:28:33] -rw-r--r--. 1 boinc boinc     20678 Oct 13 02:28 stderr.txt
[2025-10-13 02:28:33] HITS file was successfully produced:
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc 192984175 Oct 13 02:24 shared/HITS.pool.root.1
[2025-10-13 02:28:33]  *** Contents of shared directory: ***
[2025-10-13 02:28:33] total 406124
[2025-10-13 02:28:33] -rw-r--r--. 2 boinc boinc 219801625 Oct 12 22:13 ATLAS.root_0
[2025-10-13 02:28:33] -rw-r--r--. 2 boinc boinc     15120 Oct 12 22:13 start_atlas.sh
[2025-10-13 02:28:33] -rw-r--r--. 2 boinc boinc    569680 Oct 12 22:13 input.tar.gz
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc 192984175 Oct 13 02:24 HITS.pool.root.1
[2025-10-13 02:28:33] -rw-------. 1 boinc boinc   2488320 Oct 13 02:28 result.tar.gz
02:28:35 (2118): run_atlas exited; CPU time 54449.146670
02:28:35 (2118): called boinc_finish(0)

</stderr_txt>
]]>

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