Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:09:21 (3925675): wrapper (7.7.26015): starting
12:09:21 (3925675): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:09:21] Arguments: --nthreads 8
[2025-10-12 12:09:21] Threads: 8
[2025-10-12 12:09:21] Checking for CVMFS
[2025-10-12 12:09:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:09:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:09:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:09:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:09:23] 2.13.2.0 3269412 35948 389348 151625 2 488 35474479 40960001 62731 16776704 0 462143940 99.847 184748567 36779 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:09:23] CVMFS is ok
[2025-10-12 12:09:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:09:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:09:23] Further information can be found at the LHC@home message board.
[2025-10-12 12:09:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:09:23] Checking for apptainer binary...
[2025-10-12 12:09:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:09:23] Running /usr/bin/apptainer --version
[2025-10-12 12:09:23] apptainer version 1.4.3-1.el9
[2025-10-12 12:09:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:09:23] c8-16-2.aglt2.org
[2025-10-12 12:09:23] apptainer works
[2025-10-12 12:09:23] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:09:23] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:09:23] Starting ATLAS job with PandaID=6839987943
[2025-10-12 12:09:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:20:46]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:20:46] 2025-10-12 17:19:22,260 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:23,571 | INFO     | job 6839987943 has state=finished
[2025-10-12 13:20:46] 2025-10-12 17:19:23,571 | INFO     | preparing for final server update for job 6839987943 in state='finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:23,571 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:20:46] 2025-10-12 17:19:23,571 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:20:46] 2025-10-12 17:19:23,572 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:20:46] 2025-10-12 17:19:23,572 | INFO     | job 6839987943 has finished - writing final server update
[2025-10-12 13:20:46] 2025-10-12 17:19:23,572 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:20:46] 2025-10-12 17:19:23,572 | INFO     | executing command: lscpu
[2025-10-12 13:20:46] 2025-10-12 17:19:23,692 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:20:46] 2025-10-12 17:19:24,259 | INFO     | time since job start (4130s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:24,774 | INFO     | monitor loop #274: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:24,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:26,853 | INFO     | PID=3937469 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 13:20:46] 2025-10-12 17:19:26,853 | INFO     | .. there are 95 such processes running
[2025-10-12 13:20:46] 2025-10-12 17:19:27,281 | INFO     | monitor loop #275: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:27,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:27,854 | INFO     | time since job start (4133s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:29,785 | INFO     | monitor loop #276: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:29,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:29,861 | INFO     | time since job start (4135s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:31,873 | INFO     | time since job start (4137s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:32,292 | INFO     | monitor loop #277: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:32,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:33,880 | INFO     | time since job start (4139s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:34,798 | INFO     | monitor loop #278: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:34,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:35,887 | INFO     | time since job start (4141s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:37,303 | INFO     | monitor loop #279: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:37,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:37,895 | INFO     | time since job start (4143s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:39,808 | INFO     | monitor loop #280: job 0:6839987943 is in state 'finished'
[2025-10-12 13:20:46] 2025-10-12 17:19:39,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:20:46] 2025-10-12 17:19:39,902 | INFO     | time since job start (4145s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:41,598 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 13:20:46] 2025-10-12 17:19:41,604 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9878906249987
[2025-10-12 13:20:46] 2025-10-12 17:19:41,618 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6839987943/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:20:46] 2025-10-12 17:19:41,618 | INFO     | extracted standard info from prmon json
[2025-10-12 13:20:46] 2025-10-12 17:19:41,618 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:20:46] 2025-10-12 17:19:41,618 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:20:46] 2025-10-12 17:19:41,619 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:20:46] 2025-10-12 17:19:41,619 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | sum of square deviations: 63666310.0
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | sum of deviations: 236404280.00000006
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | mean x: 1760287632.0
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | mean y: 2152109.2711864407
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | -- intersect: -6534107495.468982
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | intersect: -6534107495.468982
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | chi2: 0.0204104910671267
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | -- intersect: -6534107495.468982
[2025-10-12 13:20:46] 2025-10-12 17:19:41,620 | INFO     | current memory leak: 3.71 B/s (using 59 data points, chi2=0.02)
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | ..............................
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . Timing measurements:
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . get job = 0 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . initial setup = 8 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . payload setup = 35 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . stage-in = 0 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . payload execution = 4025 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . stage-out = 1 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | . log creation = 0 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,621 | INFO     | ..............................
[2025-10-12 13:20:46] 2025-10-12 17:19:41,909 | INFO     | time since job start (4147s) is within the limit (172800.0s)
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | 
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | job summary report
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | --------------------------------------------------
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | PanDA job id: 6839987943
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | task id: 46676269
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | errors: (none)
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | pilot state: finished 
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | transexitcode: 0
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | exeerrorcode: 0
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | exeerrordiag: 
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | exitcode: 0
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | exitmsg: OK
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | cpuconsumptiontime: 22333 s
[2025-10-12 13:20:46] 2025-10-12 17:19:41,971 | INFO     | nevents: 400
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | neventsw: 0
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | pid: 3950346
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | pgrp: 3950346
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | corecount: 8
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | event service: False
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | sizes: {0: 2348029, 1: 2348714, 2: 2348913, 13: 2348913, 23: 2348969, 31: 2349259, 34: 2349415, 4065: 2375285, 4067: 2384339, 4088: 2384477}
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | --------------------------------------------------
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | 
[2025-10-12 13:20:46] 2025-10-12 17:19:41,972 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:20:46] 2025-10-12 17:19:42,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,008 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:20:46] 2025-10-12 17:19:42,008 | INFO     | job 6839987943 has completed (purged errors)
[2025-10-12 13:20:46] 2025-10-12 17:19:42,008 | INFO     | overall cleanup function is called
[2025-10-12 13:20:46] 2025-10-12 17:19:43,037 | INFO     | --- collectZombieJob: --- 10, [3950346]
[2025-10-12 13:20:46] 2025-10-12 17:19:43,038 | INFO     | zombie collector waiting for pid 3950346
[2025-10-12 13:20:46] 2025-10-12 17:19:43,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:20:46] 2025-10-12 17:19:43,038 | INFO     | collected zombie processes
[2025-10-12 13:20:46] 2025-10-12 17:19:43,038 | INFO     | will attempt to kill all subprocesses of pid=3950346
[2025-10-12 13:20:46] 2025-10-12 17:19:44,536 | INFO     | process IDs to be killed: [3950346] (in reverse order)
[2025-10-12 13:20:46] 2025-10-12 17:19:45,038 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:20:46] 2025-10-12 17:19:45,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:20:46] 2025-10-12 17:19:45,079 | INFO     | did not find any defunct processes belonging to 3950346
[2025-10-12 13:20:46] 2025-10-12 17:19:45,147 | INFO     | did not find any defunct processes belonging to 3950346
[2025-10-12 13:20:46] 2025-10-12 17:19:45,147 | INFO     | ready for new job
[2025-10-12 13:20:46] 2025-10-12 17:19:45,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:20:46] 2025-10-12 17:19:45,174 | INFO     | ***************************************
[2025-10-12 13:20:46] 2025-10-12 17:19:45,174 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:20:46] 2025-10-12 17:19:45,174 | INFO     | ***************************************
[2025-10-12 13:20:46] 2025-10-12 17:19:45,174 | INFO     | 
[2025-10-12 13:20:46] 2025-10-12 17:19:45,214 | INFO     | architecture information:
[2025-10-12 13:20:46] 2025-10-12 17:19:45,219 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:20:46] 2025-10-12 17:19:45,299 | INFO     | cat /etc/os-release:
[2025-10-12 13:20:46] NAME="CentOS Linux"
[2025-10-12 13:20:46] VERSION="7 (Core)"
[2025-10-12 13:20:46] ID="centos"
[2025-10-12 13:20:46] ID_LIKE="rhel fedora"
[2025-10-12 13:20:46] VERSION_ID="7"
[2025-10-12 13:20:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:20:46] ANSI_COLOR="0;31"
[2025-10-12 13:20:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:20:46] HOME_URL="https://www.centos.org/"
[2025-10-12 13:20:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:20:46] 
[2025-10-12 13:20:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:20:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:20:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:20:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:20:46] 
[2025-10-12 13:20:46] 2025-10-12 17:19:45,299 | INFO     | ***************************************
[2025-10-12 13:20:46] 2025-10-12 17:19:45,805 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-12 13:20:46] 2025-10-12 17:19:45,912 | INFO     | sufficient remaining disk space (167684079616 B)
[2025-10-12 13:20:46] 2025-10-12 17:19:45,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:20:46] 2025-10-12 17:19:45,913 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:20:46] 2025-10-12 17:19:45,913 | INFO     | update_server=False
[2025-10-12 13:20:46] 2025-10-12 17:19:45,913 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:20:46] 2025-10-12 17:19:45,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:20:46] 2025-10-12 17:19:45,913 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:20:46] 2025-10-12 17:19:45,913 | INFO     | aborting loop
[2025-10-12 13:20:46] 2025-10-12 17:19:46,058 | INFO     | all data control threads have been joined
[2025-10-12 13:20:46] 2025-10-12 17:19:46,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:20:46] 2025-10-12 17:19:46,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:20:46] 2025-10-12 17:19:46,919 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:46,919 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:46,988 | INFO     | [job] validate thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:47,066 | INFO     | all job control threads have been joined
[2025-10-12 13:20:46] 2025-10-12 17:19:47,067 | INFO     | [data] control thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:47,144 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:47,331 | INFO     | all payload control threads have been joined
[2025-10-12 13:20:46] 2025-10-12 17:19:47,691 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:47,750 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:47,998 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:48,072 | INFO     | [job] control thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:48,096 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:48,175 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:48,305 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:48,338 | INFO     | [payload] control thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:48,367 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:49,923 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:19:56,315 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:20:46] 2025-10-12 17:19:57,321 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:20:46] 2025-10-12 17:20:16,274 | INFO     | PID=3937469 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:20:46] 2025-10-12 17:20:16,274 | INFO     | .. there are 95 such processes running
[2025-10-12 13:20:46] 2025-10-12 17:20:16,274 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:20:46] 2025-10-12 17:20:16,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:20:46] 2025-10-12 17:20:16,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:20:46] 2025-10-12 17:20:40,556 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:20:46] 2025-10-12 17:20:40,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140073092712256)>', '<ExcThread(monitor, started 140072741484288)>']
[2025-10-12 13:20:46] 2025-10-12 17:20:41,429 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:20:46] 2025-10-12 17:20:41,429 | INFO     | [monitor] control thread has ended
[2025-10-12 13:20:46] 2025-10-12 17:20:45,649 | INFO     | all workflow threads have been joined
[2025-10-12 13:20:46] 2025-10-12 17:20:45,649 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:20:46] 2025-10-12 17:20:45,649 | INFO     | traces error code: 0
[2025-10-12 13:20:46] 2025-10-12 17:20:45,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:20:46] 2025-10-12 17:20:45,853 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:20:46] 2025-10-12 17:20:45,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:20:46] 2025-10-12 17:20:45,857 [wrapper] pilotpid: 3937469
[2025-10-12 13:20:46] 2025-10-12 17:20:45,859 [wrapper] Pilot exit status: 0
[2025-10-12 13:20:46] 2025-10-12 17:20:45,977 [wrapper] pandaids: 6839987943
[2025-10-12 13:20:46] 2025-10-12 17:20:46,232 [wrapper] cleanup supervisor_pilot  342343 3937470
[2025-10-12 13:20:46] 2025-10-12 17:20:46,247 [wrapper] Test setup, not cleaning
[2025-10-12 13:20:46] 2025-10-12 17:20:46,310 [wrapper] apfmon messages muted
[2025-10-12 13:20:46] 2025-10-12 17:20:46,325 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:20:46] 2025-10-12 17:20:46,328 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:20:46]  *** Error codes and diagnostics ***
[2025-10-12 13:20:46]     "exeErrorCode": 0,
[2025-10-12 13:20:46]     "exeErrorDiag": "",
[2025-10-12 13:20:46]     "pilotErrorCode": 0,
[2025-10-12 13:20:46]     "pilotErrorDiag": "",
[2025-10-12 13:20:46]  *** Listing of results directory ***
[2025-10-12 13:20:46] total 406804
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:38 queuedata.json
[2025-10-12 13:20:46] -rwx------. 1 boincer umatlas     36292 Oct 12 08:39 runpilot2-wrapper.sh
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:20:46] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:09 run_atlas
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:09 job.xml
[2025-10-12 13:20:46] -rw-r--r--. 2 boincer umatlas 220390048 Oct 12 12:09 EVNT.46676267._003794.pool.root.1
[2025-10-12 13:20:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:09 start_atlas.sh
[2025-10-12 13:20:46] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:09 shared
[2025-10-12 13:20:46] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 12:09 input.tar.gz
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:09 boinc_lockfile
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:09 pandaJob.out
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas    975528 Oct 12 12:10 agis_schedconf.cvmfs.json
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:10 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:20:46] drwx------. 5 boincer umatlas      4096 Oct 12 12:10 pilot3
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas 190505184 Oct 12 13:18 HITS.46676269._078287.pool.root.1
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas       530 Oct 12 13:18 boinc_task_state.xml
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 13:19 init_data.xml
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas      1036 Oct 12 13:19 memory_monitor_summary.json
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas    309810 Oct 12 13:19 log.46676269._078287.job.log.tgz.1
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas      7778 Oct 12 13:19 heartbeat.json
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas        95 Oct 12 13:20 pilot_heartbeat.json
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas        27 Oct 12 13:20 wrapper_checkpoint.txt
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas      4897 Oct 12 13:20 pilotlog.txt
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:20 boinc_mmap_file
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas    570902 Oct 12 13:20 log.46676269._078287.job.log.1
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas       357 Oct 12 13:20 output.list
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:20 runtime_log
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas    901120 Oct 12 13:20 result.tar.gz
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas       651 Oct 12 13:20 VGHNDm7WAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2njNDmtawf4n.diag
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 13:20 runtime_log.err
[2025-10-12 13:20:46] -rw-r--r--. 1 boincer umatlas     22283 Oct 12 13:20 stderr.txt
[2025-10-12 13:20:46] HITS file was successfully produced:
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas 190505184 Oct 12 13:18 shared/HITS.pool.root.1
[2025-10-12 13:20:46]  *** Contents of shared directory: ***
[2025-10-12 13:20:46] total 402736
[2025-10-12 13:20:46] -rw-r--r--. 2 boincer umatlas 220390048 Oct 12 12:09 ATLAS.root_0
[2025-10-12 13:20:46] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:09 start_atlas.sh
[2025-10-12 13:20:46] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 12:09 input.tar.gz
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas 190505184 Oct 12 13:18 HITS.pool.root.1
[2025-10-12 13:20:46] -rw-------. 1 boincer umatlas    901120 Oct 12 13:20 result.tar.gz
13:20:48 (3925675): run_atlas exited; CPU time 22496.967168
13:20:48 (3925675): called boinc_finish(0)

</stderr_txt>
]]>

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