Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:29:12 (1279679): wrapper (7.7.26015): starting
12:29:12 (1279679): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:29:12] Arguments: --nthreads 8
[2025-10-12 12:29:12] Threads: 8
[2025-10-12 12:29:12] Checking for CVMFS
[2025-10-12 12:29:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:29:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:29:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:29:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:29:32] 2.13.2.0 5081 5920 151812 151625 2 747 33613750 40960001 27455 16776704 0 20981754 99.730 14325577 34931 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:29:32] CVMFS is ok
[2025-10-12 12:29:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:29:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:29:32] Further information can be found at the LHC@home message board.
[2025-10-12 12:29:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:29:32] Checking for apptainer binary...
[2025-10-12 12:29:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:29:32] Running /usr/bin/apptainer --version
[2025-10-12 12:29:32] apptainer version 1.4.3-1.el9
[2025-10-12 12:29:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:29:33] c-212-6.aglt2.org
[2025-10-12 12:29:33] apptainer works
[2025-10-12 12:29:33] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:29:33] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:29:33] Starting ATLAS job with PandaID=6839987918
[2025-10-12 12:29:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:00:11 (1279679): BOINC client no longer exists - exiting
14:00:11 (1279679): timer handler: client dead, exiting
14:12:41 (1554078): wrapper (7.7.26015): starting
14:12:41 (1554078): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:12:41] Arguments: --nthreads 8
[2025-10-12 14:12:41] Threads: 8
[2025-10-12 14:12:41] This job has been restarted, cleaning up previous attempt
[2025-10-12 14:12:41] Checking for CVMFS
[2025-10-12 14:12:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:12:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:12:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:12:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:12:41] 2.13.2.0 5081 6024 126144 151631 3 14 34019401 40960000 23773 16776704 0 21336340 99.733 14475818 34967 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:12:41] CVMFS is ok
[2025-10-12 14:12:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:12:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:12:41] Further information can be found at the LHC@home message board.
[2025-10-12 14:12:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:12:41] Checking for apptainer binary...
[2025-10-12 14:12:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:12:41] Running /usr/bin/apptainer --version
[2025-10-12 14:12:41] apptainer version 1.4.3-1.el9
[2025-10-12 14:12:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:12:41] c-212-6.aglt2.org
[2025-10-12 14:12:41] apptainer works
[2025-10-12 14:12:42] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:12:42] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:12:42] Starting ATLAS job with PandaID=6839987918
[2025-10-12 14:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:02:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:02:37] 2025-10-12 22:02:02,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,378 | INFO     | time since job start (13747s) is within the limit (172800.0s)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,918 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 18:02:37] 2025-10-12 22:02:02,923 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2997.368145833334
[2025-10-12 18:02:37] 2025-10-12 22:02:02,936 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839987918/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,936 | INFO     | extracted standard info from prmon json
[2025-10-12 18:02:37] 2025-10-12 22:02:02,936 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:02:37] 2025-10-12 22:02:02,937 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:02:37] 2025-10-12 22:02:02,937 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:02:37] 2025-10-12 22:02:02,937 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:02:37] 2025-10-12 22:02:02,940 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:02:37] 2025-10-12 22:02:02,940 | INFO     | sum of square deviations: 3531949539.7155356
[2025-10-12 18:02:37] 2025-10-12 22:02:02,941 | INFO     | sum of deviations: 25913842894.857754
[2025-10-12 18:02:37] 2025-10-12 22:02:02,941 | INFO     | mean x: 1760299646.0355556
[2025-10-12 18:02:37] 2025-10-12 22:02:02,941 | INFO     | mean y: 2499093.0177777777
[2025-10-12 18:02:37] 2025-10-12 22:02:02,941 | INFO     | -- intersect: -12912784084.8141
[2025-10-12 18:02:37] 2025-10-12 22:02:02,942 | INFO     | intersect: -12912784084.8141
[2025-10-12 18:02:37] 2025-10-12 22:02:02,942 | INFO     | chi2: 1.2659503416443156
[2025-10-12 18:02:37] 2025-10-12 22:02:02,942 | INFO     | sum of square deviations: 3301677894.7090826
[2025-10-12 18:02:37] 2025-10-12 22:02:02,943 | INFO     | sum of deviations: 25182697019.609108
[2025-10-12 18:02:37] 2025-10-12 22:02:02,943 | INFO     | mean x: 1760299493.5363636
[2025-10-12 18:02:37] 2025-10-12 22:02:02,943 | INFO     | mean y: 2498608.4863636363
[2025-10-12 18:02:37] 2025-10-12 22:02:02,943 | INFO     | -- intersect: -13423732000.058062
[2025-10-12 18:02:37] 2025-10-12 22:02:02,944 | INFO     | intersect: -13423732000.058062
[2025-10-12 18:02:37] 2025-10-12 22:02:02,944 | INFO     | chi2: 1.2665364708509472
[2025-10-12 18:02:37] 2025-10-12 22:02:02,944 | INFO     | current chi2=1.2665364708509472 (change=-0.046299541723752044 %)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,944 | INFO     | right removable region: 219
[2025-10-12 18:02:37] 2025-10-12 22:02:02,944 | INFO     | sum of square deviations: 3301673014.7090826
[2025-10-12 18:02:37] 2025-10-12 22:02:02,945 | INFO     | sum of deviations: -5714884198.990909
[2025-10-12 18:02:37] 2025-10-12 22:02:02,945 | INFO     | mean x: 1760299798.5363636
[2025-10-12 18:02:37] 2025-10-12 22:02:02,945 | INFO     | mean y: 2519835.6863636365
[2025-10-12 18:02:37] 2025-10-12 22:02:02,946 | INFO     | -- intersect: 3049432555.184949
[2025-10-12 18:02:37] 2025-10-12 22:02:02,946 | INFO     | intersect: 3049432555.184949
[2025-10-12 18:02:37] 2025-10-12 22:02:02,946 | INFO     | chi2: 0.012246722980751175
[2025-10-12 18:02:37] 2025-10-12 22:02:02,946 | INFO     | current chi2=0.012246722980751175 (change=99.03260636867918 %)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,946 | INFO     | sum of square deviations: 3081642536.7720876
[2025-10-12 18:02:37] 2025-10-12 22:02:02,947 | INFO     | sum of deviations: -5925682987.511626
[2025-10-12 18:02:37] 2025-10-12 22:02:02,947 | INFO     | mean x: 1760299951.0325582
[2025-10-12 18:02:37] 2025-10-12 22:02:02,947 | INFO     | mean y: 2519976.930232558
[2025-10-12 18:02:37] 2025-10-12 22:02:02,947 | INFO     | -- intersect: 3387396499.201133
[2025-10-12 18:02:37] 2025-10-12 22:02:02,948 | INFO     | intersect: 3387396499.201133
[2025-10-12 18:02:37] 2025-10-12 22:02:02,948 | INFO     | chi2: 0.011765504124082312
[2025-10-12 18:02:37] 2025-10-12 22:02:02,948 | INFO     | current chi2=0.011765504124082312 (change=3.929368349600298 %)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,948 | INFO     | left removable region: 20
[2025-10-12 18:02:37] 2025-10-12 22:02:02,948 | INFO     | sum of square deviations: 2443576801.819099
[2025-10-12 18:02:37] 2025-10-12 22:02:02,949 | INFO     | sum of deviations: -3445943808.1407037
[2025-10-12 18:02:37] 2025-10-12 22:02:02,949 | INFO     | mean x: 1760300073.0301507
[2025-10-12 18:02:37] 2025-10-12 22:02:02,949 | INFO     | mean y: 2517999.3567839195
[2025-10-12 18:02:37] 2025-10-12 22:02:02,949 | INFO     | -- intersect: 2484901664.405566
[2025-10-12 18:02:37] 2025-10-12 22:02:02,949 | INFO     | intersect: 2484901664.405566
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | chi2: 0.010185431911700741
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | -- intersect: 2484901664.405566
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | current memory leak: -1.41 B/s (using 199 data points, chi2=0.01)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | could have reported an average CPU frequency of 2942 MHz (11 samples)
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | ..............................
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | . Timing measurements:
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | . get job = 0 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,950 | INFO     | . initial setup = 1 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,951 | INFO     | . payload setup = 8 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,951 | INFO     | . stage-in = 0 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,951 | INFO     | . payload execution = 13709 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,951 | INFO     | . stage-out = 1 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,951 | INFO     | . log creation = 0 s
[2025-10-12 18:02:37] 2025-10-12 22:02:02,951 | INFO     | ..............................
[2025-10-12 18:02:37] 2025-10-12 22:02:03,018 | INFO     | 
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | job summary report
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | --------------------------------------------------
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | PanDA job id: 6839987918
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | task id: 46676269
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | errors: (none)
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | pilot state: finished 
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | transexitcode: 0
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | exeerrorcode: 0
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | exeerrordiag: 
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | exitcode: 0
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | exitmsg: OK
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | cpuconsumptiontime: 35303 s
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | nevents: 400
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | neventsw: 0
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | pid: 1603695
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | pgrp: 1603695
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | corecount: 8
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | event service: False
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 13720: 2379922, 13723: 2388976, 13730: 2389114}
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | --------------------------------------------------
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | 
[2025-10-12 18:02:37] 2025-10-12 22:02:03,019 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 18:02:37] 2025-10-12 22:02:03,036 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,036 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,037 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:02:37] 2025-10-12 22:02:03,038 | INFO     | job 6839987918 has completed (purged errors)
[2025-10-12 18:02:37] 2025-10-12 22:02:03,038 | INFO     | overall cleanup function is called
[2025-10-12 18:02:37] 2025-10-12 22:02:04,046 | INFO     | --- collectZombieJob: --- 10, [1603695]
[2025-10-12 18:02:37] 2025-10-12 22:02:04,047 | INFO     | zombie collector waiting for pid 1603695
[2025-10-12 18:02:37] 2025-10-12 22:02:04,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:02:37] 2025-10-12 22:02:04,047 | INFO     | collected zombie processes
[2025-10-12 18:02:37] 2025-10-12 22:02:04,047 | INFO     | will attempt to kill all subprocesses of pid=1603695
[2025-10-12 18:02:37] 2025-10-12 22:02:04,448 | INFO     | process IDs to be killed: [1603695] (in reverse order)
[2025-10-12 18:02:37] 2025-10-12 22:02:04,578 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:02:37] 2025-10-12 22:02:04,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:02:37] 2025-10-12 22:02:04,618 | INFO     | did not find any defunct processes belonging to 1603695
[2025-10-12 18:02:37] 2025-10-12 22:02:04,635 | INFO     | did not find any defunct processes belonging to 1603695
[2025-10-12 18:02:37] 2025-10-12 22:02:04,635 | INFO     | ready for new job
[2025-10-12 18:02:37] 2025-10-12 22:02:04,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:02:37] 2025-10-12 22:02:04,637 | INFO     | ***************************************
[2025-10-12 18:02:37] 2025-10-12 22:02:04,637 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:02:37] 2025-10-12 22:02:04,637 | INFO     | ***************************************
[2025-10-12 18:02:37] 2025-10-12 22:02:04,637 | INFO     | 
[2025-10-12 18:02:37] 2025-10-12 22:02:04,642 | INFO     | architecture information:
[2025-10-12 18:02:37] 2025-10-12 22:02:04,642 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:02:37] 2025-10-12 22:02:04,667 | INFO     | cat /etc/os-release:
[2025-10-12 18:02:37] NAME="CentOS Linux"
[2025-10-12 18:02:37] VERSION="7 (Core)"
[2025-10-12 18:02:37] ID="centos"
[2025-10-12 18:02:37] ID_LIKE="rhel fedora"
[2025-10-12 18:02:37] VERSION_ID="7"
[2025-10-12 18:02:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:02:37] ANSI_COLOR="0;31"
[2025-10-12 18:02:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:02:37] HOME_URL="https://www.centos.org/"
[2025-10-12 18:02:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:02:37] 
[2025-10-12 18:02:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:02:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:02:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:02:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:02:37] 
[2025-10-12 18:02:37] 2025-10-12 22:02:04,668 | INFO     | ***************************************
[2025-10-12 18:02:37] 2025-10-12 22:02:05,171 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 18:02:37] 2025-10-12 22:02:05,191 | INFO     | sufficient remaining disk space (127059099648 B)
[2025-10-12 18:02:37] 2025-10-12 22:02:05,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:02:37] 2025-10-12 22:02:05,192 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:02:37] 2025-10-12 22:02:05,192 | INFO     | update_server=False
[2025-10-12 18:02:37] 2025-10-12 22:02:05,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:02:37] 2025-10-12 22:02:05,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:02:37] 2025-10-12 22:02:05,638 | INFO     | all job control threads have been joined
[2025-10-12 18:02:37] 2025-10-12 22:02:05,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:02:37] 2025-10-12 22:02:05,659 | INFO     | aborting loop
[2025-10-12 18:02:37] 2025-10-12 22:02:05,880 | INFO     | all data control threads have been joined
[2025-10-12 18:02:37] 2025-10-12 22:02:06,197 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,347 | INFO     | [job] validate thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,363 | INFO     | all payload control threads have been joined
[2025-10-12 18:02:37] 2025-10-12 22:02:06,473 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,552 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,643 | INFO     | [job] control thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,664 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,839 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,885 | INFO     | [data] control thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:06,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:02:37] 2025-10-12 22:02:07,061 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:07,131 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:07,197 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:07,338 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:07,367 | INFO     | [payload] control thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:08,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:02:37] 2025-10-12 22:02:09,035 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:10,930 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:02:37] 2025-10-12 22:02:18,437 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:02:37] 2025-10-12 22:02:20,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140634596697920)>', '<ExcThread(monitor, started 140634090346240)>']
[2025-10-12 18:02:37] 2025-10-12 22:02:25,098 | INFO     | all workflow threads have been joined
[2025-10-12 18:02:37] 2025-10-12 22:02:25,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:02:37] 2025-10-12 22:02:25,099 | INFO     | traces error code: 0
[2025-10-12 18:02:37] 2025-10-12 22:02:25,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:02:37] 2025-10-12 22:02:35,921 | INFO     | PID=1572254 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:02:37] 2025-10-12 22:02:35,921 | INFO     | .. there are 29 such processes running
[2025-10-12 18:02:37] 2025-10-12 22:02:35,922 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:02:37] 2025-10-12 22:02:35,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:02:37] 2025-10-12 22:02:35,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:02:37] 2025-10-12 22:02:35,922 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:02:37] 2025-10-12 22:02:35,922 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 18:02:37] 2025-10-12 22:02:35,922 | INFO     | [monitor] control thread has ended
[2025-10-12 18:02:37] 2025-10-12 22:02:37,147 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:02:37] 2025-10-12 22:02:37,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:02:37] 2025-10-12 22:02:37,154 [wrapper] pilotpid: 1572254
[2025-10-12 18:02:37] 2025-10-12 22:02:37,158 [wrapper] Pilot exit status: 0
[2025-10-12 18:02:37] 2025-10-12 22:02:37,173 [wrapper] pandaids: 6839987918 6839987918
[2025-10-12 18:02:37] 2025-10-12 22:02:37,271 [wrapper] cleanup supervisor_pilot 2325717 1572255
[2025-10-12 18:02:37] 2025-10-12 22:02:37,276 [wrapper] Test setup, not cleaning
[2025-10-12 18:02:37] 2025-10-12 22:02:37,279 [wrapper] apfmon messages muted
[2025-10-12 18:02:37] 2025-10-12 22:02:37,289 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:02:37] 2025-10-12 22:02:37,293 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:02:37]  *** Error codes and diagnostics ***
[2025-10-12 18:02:37]     "exeErrorCode": 0,
[2025-10-12 18:02:37]     "exeErrorDiag": "",
[2025-10-12 18:02:37]     "pilotErrorCode": 0,
[2025-10-12 18:02:37]     "pilotErrorDiag": "",
[2025-10-12 18:02:37]  *** Listing of results directory ***
[2025-10-12 18:02:37] total 632012
[2025-10-12 18:02:37] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 18:02:37] -rwx------. 1 boincer umatlas     36292 Oct 12 08:38 runpilot2-wrapper.sh
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:38 queuedata.json
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:02:37] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:29 run_atlas
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:29 job.xml
[2025-10-12 18:02:37] -rw-r--r--. 3 boincer umatlas 220001236 Oct 12 12:29 EVNT.46676267._003792.pool.root.1
[2025-10-12 18:02:37] -rw-r--r--. 3 boincer umatlas 220001236 Oct 12 12:29 ATLAS.root_0
[2025-10-12 18:02:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:29 start_atlas.sh
[2025-10-12 18:02:37] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:29 shared
[2025-10-12 18:02:37] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 12:29 input.tar.gz
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:29 boinc_lockfile
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 14:12 pandaJob.out
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas    975528 Oct 12 14:12 agis_schedconf.cvmfs.json
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas      6946 Oct 12 17:57 init_data.xml
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas 198636782 Oct 12 18:01 HITS.46676269._078262.pool.root.1
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas       530 Oct 12 18:01 boinc_task_state.xml
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas      1048 Oct 12 18:01 memory_monitor_summary.json
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas   1560580 Oct 12 18:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas    452193 Oct 12 18:01 log.46676269._078262.job.log.tgz.1
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas      7797 Oct 12 18:02 heartbeat.json
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas       893 Oct 12 18:02 pilotlog.txt
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas        96 Oct 12 18:02 pilot_heartbeat.json
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:02 boinc_mmap_file
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas   1859732 Oct 12 18:02 log.46676269._078262.job.log.1
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas        28 Oct 12 18:02 wrapper_checkpoint.txt
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas       357 Oct 12 18:02 output.list
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:02 runtime_log
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas   2334720 Oct 12 18:02 result.tar.gz
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas      8784 Oct 12 18:02 runtime_log.err
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas       783 Oct 12 18:02 i3DNDm8VAS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmitTMDmxiYVLm.diag
[2025-10-12 18:02:37] -rw-r--r--. 1 boincer umatlas     23442 Oct 12 18:02 stderr.txt
[2025-10-12 18:02:37] HITS file was successfully produced:
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas 198636782 Oct 12 18:01 shared/HITS.pool.root.1
[2025-10-12 18:02:37]  *** Contents of shared directory: ***
[2025-10-12 18:02:37] total 411696
[2025-10-12 18:02:37] -rw-r--r--. 3 boincer umatlas 220001236 Oct 12 12:29 ATLAS.root_0
[2025-10-12 18:02:37] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:29 start_atlas.sh
[2025-10-12 18:02:37] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 12:29 input.tar.gz
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas 198636782 Oct 12 18:01 HITS.pool.root.1
[2025-10-12 18:02:37] -rw-------. 1 boincer umatlas   2334720 Oct 12 18:02 result.tar.gz
18:02:39 (1554078): run_atlas exited; CPU time 35738.960953
18:02:39 (1554078): called boinc_finish(0)

</stderr_txt>
]]>

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