Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:46:44 (3098070): wrapper (7.7.26015): starting
01:46:44 (3098070): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 01:46:44] Arguments: --nthreads 3
[2025-10-13 01:46:44] Threads: 3
[2025-10-13 01:46:44] Checking for CVMFS
[2025-10-13 01:46:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:46:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:46:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:46:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:46:44] 2.9.2.0 2131560 3398 67776 151641 2 57 18480497 36864001 0 130560 0 2526793 99.990 119943 989 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 01:46:44] CVMFS is ok
[2025-10-13 01:46:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:46:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:46:44] Further information can be found at the LHC@home message board.
[2025-10-13 01:46:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:46:44] Checking for apptainer binary...
[2025-10-13 01:46:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:46:44] Running /usr/bin/apptainer --version
[2025-10-13 01:46:44] apptainer version 1.4.1-1.1
[2025-10-13 01:46:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:46:44] atlasA228
[2025-10-13 01:46:44] apptainer works
[2025-10-13 01:46:44] Set ATHENA_PROC_NUMBER=3
[2025-10-13 01:46:44] Set ATHENA_CORE_NUMBER=3
[2025-10-13 01:46:44] Starting ATLAS job with PandaID=6839987859
[2025-10-13 01:46:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:14:08]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:14:08] 2025-10-13 01:13:37,118 | INFO     | collected zombie processes
[2025-10-13 03:14:08] 2025-10-13 01:13:37,118 | INFO     | will attempt to kill all subprocesses of pid=3108230
[2025-10-13 03:14:08] 2025-10-13 01:13:37,158 | INFO     | process IDs to be killed: [3108230] (in reverse order)
[2025-10-13 03:14:08] 2025-10-13 01:13:37,185 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:14:08] 2025-10-13 01:13:37,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:14:08] 2025-10-13 01:13:37,187 | INFO     | did not find any defunct processes belonging to 3108230
[2025-10-13 03:14:08] 2025-10-13 01:13:37,187 | INFO     | did not find any defunct processes belonging to 3108230
[2025-10-13 03:14:08] 2025-10-13 01:13:37,188 | INFO     | ready for new job
[2025-10-13 03:14:08] 2025-10-13 01:13:37,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:14:08] 2025-10-13 01:13:37,188 | INFO     | ***************************************
[2025-10-13 03:14:08] 2025-10-13 01:13:37,188 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:14:08] 2025-10-13 01:13:37,188 | INFO     | ***************************************
[2025-10-13 03:14:08] 2025-10-13 01:13:37,188 | INFO     | 
[2025-10-13 03:14:08] 2025-10-13 01:13:37,189 | INFO     | architecture information:
[2025-10-13 03:14:08] 2025-10-13 01:13:37,189 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:14:08] 2025-10-13 01:13:37,198 | INFO     | cat /etc/os-release:
[2025-10-13 03:14:08] NAME="CentOS Linux"
[2025-10-13 03:14:08] VERSION="7 (Core)"
[2025-10-13 03:14:08] ID="centos"
[2025-10-13 03:14:08] ID_LIKE="rhel fedora"
[2025-10-13 03:14:08] VERSION_ID="7"
[2025-10-13 03:14:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:14:08] ANSI_COLOR="0;31"
[2025-10-13 03:14:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:14:08] HOME_URL="https://www.centos.org/"
[2025-10-13 03:14:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:14:08] 
[2025-10-13 03:14:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:14:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:14:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:14:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:14:08] 
[2025-10-13 03:14:08] 2025-10-13 01:13:37,198 | INFO     | ***************************************
[2025-10-13 03:14:08] 2025-10-13 01:13:37,702 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:14:08] 2025-10-13 01:13:37,715 | INFO     | sufficient remaining disk space (342057025536 B)
[2025-10-13 03:14:08] 2025-10-13 01:13:37,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:14:08] 2025-10-13 01:13:37,715 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:14:08] 2025-10-13 01:13:37,715 | INFO     | update_server=False
[2025-10-13 03:14:08] 2025-10-13 01:13:37,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:14:08] 2025-10-13 01:13:37,715 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:14:08] 2025-10-13 01:13:37,802 | INFO     | all job control threads have been joined
[2025-10-13 03:14:08] 2025-10-13 01:13:37,871 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 03:14:08] 2025-10-13 01:13:37,872 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 03:14:08] 2025-10-13 01:13:37,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:14:08] 2025-10-13 01:13:37,872 | INFO     | will abort loop
[2025-10-13 03:14:08] 2025-10-13 01:13:38,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:14:08] 2025-10-13 01:13:38,589 | INFO     | all data control threads have been joined
[2025-10-13 03:14:08] 2025-10-13 01:13:38,721 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:38,722 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:38,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:14:08] 2025-10-13 01:13:38,808 | INFO     | [job] control thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:38,878 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:39,002 | INFO     | all payload control threads have been joined
[2025-10-13 03:14:08] 2025-10-13 01:13:39,389 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:39,543 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:39,595 | INFO     | [data] control thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:39,961 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:40,008 | INFO     | [payload] control thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:40,046 | INFO     | [job] validate thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:40,132 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:40,155 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:40,170 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:40,729 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:42,331 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:13:48,325 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:14:08] 2025-10-13 01:13:49,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:14:08] 2025-10-13 01:14:01,758 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:14:08] 2025-10-13 01:14:03,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857604724544)>', '<ExcThread(monitor, started 139856751621888)>']
[2025-10-13 03:14:08] 2025-10-13 01:14:07,686 | INFO     | PID=3101789 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:14:08] 2025-10-13 01:14:07,686 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:14:08] 2025-10-13 01:14:07,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:14:08] 2025-10-13 01:14:07,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:14:08] 2025-10-13 01:14:07,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:14:08] 2025-10-13 01:14:07,687 | INFO     | [monitor] control thread has ended
[2025-10-13 03:14:08] 2025-10-13 01:14:08,583 | INFO     | all workflow threads have been joined
[2025-10-13 03:14:08] 2025-10-13 01:14:08,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:14:08] 2025-10-13 01:14:08,584 | INFO     | traces error code: 0
[2025-10-13 03:14:08] 2025-10-13 01:14:08,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:14:08] 2025-10-13 01:14:08,631 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:14:08] 2025-10-13 01:14:08,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:14:08] 2025-10-13 01:14:08,638 [wrapper] pilotpid: 3101789
[2025-10-13 03:14:08] 2025-10-13 01:14:08,642 [wrapper] Pilot exit status: 0
[2025-10-13 03:14:08] 2025-10-13 01:14:08,650 [wrapper] pandaids: 6839987859
[2025-10-13 03:14:08] 2025-10-13 01:14:08,666 [wrapper] cleanup supervisor_pilot 3120299 3101790
[2025-10-13 03:14:08] 2025-10-13 01:14:08,668 [wrapper] Test setup, not cleaning
[2025-10-13 03:14:08] 2025-10-13 01:14:08,671 [wrapper] apfmon messages muted
[2025-10-13 03:14:08] 2025-10-13 01:14:08,673 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:14:08] 2025-10-13 01:14:08,676 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:14:08]  *** Error codes and diagnostics ***
[2025-10-13 03:14:08]     "exeErrorCode": 0,
[2025-10-13 03:14:08]     "exeErrorDiag": "",
[2025-10-13 03:14:08]     "pilotErrorCode": 0,
[2025-10-13 03:14:08]     "pilotErrorDiag": "",
[2025-10-13 03:14:08]  *** Listing of results directory ***
[2025-10-13 03:14:08] total 404248
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:10 pilot3.tar.gz
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:34 queuedata.json
[2025-10-13 03:14:08] -rwx------ 1 boinc boinc     36292 Oct 12 14:35 runpilot2-wrapper.sh
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:14:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:46 run_atlas
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:46 job.xml
[2025-10-13 03:14:08] -rw-r--r-- 2 boinc boinc 220365281 Oct 13 01:46 EVNT.46676267._003783.pool.root.1
[2025-10-13 03:14:08] -rw-r--r-- 2 boinc boinc    569681 Oct 13 01:46 input.tar.gz
[2025-10-13 03:14:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:46 start_atlas.sh
[2025-10-13 03:14:08] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:46 shared
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:46 boinc_setup_complete
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc      6199 Oct 13 01:46 init_data.xml
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:46 boinc_lockfile
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc      2550 Oct 13 01:46 pandaJob.out
[2025-10-13 03:14:08] -rw------- 1 boinc boinc    975603 Oct 13 01:46 agis_schedconf.cvmfs.json
[2025-10-13 03:14:08] -rw------- 1 boinc boinc   1560580 Oct 13 01:46 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:14:08] drwx------ 5 boinc boinc      4096 Oct 13 01:46 pilot3
[2025-10-13 03:14:08] -rw------- 1 boinc boinc 187620675 Oct 13 03:13 HITS.46676269._078203.pool.root.1
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:13 boinc_task_state.xml
[2025-10-13 03:14:08] -rw------- 1 boinc boinc        95 Oct 13 03:13 pilot_heartbeat.json
[2025-10-13 03:14:08] -rw------- 1 boinc boinc      1019 Oct 13 03:13 memory_monitor_summary.json
[2025-10-13 03:14:08] -rw------- 1 boinc boinc    270085 Oct 13 03:13 log.46676269._078203.job.log.tgz.1
[2025-10-13 03:14:08] -rw------- 1 boinc boinc      7768 Oct 13 03:13 heartbeat.json
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:13 wrapper_checkpoint.txt
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:13 boinc_mmap_file
[2025-10-13 03:14:08] -rw------- 1 boinc boinc      5010 Oct 13 03:14 pilotlog.txt
[2025-10-13 03:14:08] -rw------- 1 boinc boinc    761899 Oct 13 03:14 log.46676269._078203.job.log.1
[2025-10-13 03:14:08] -rw------- 1 boinc boinc       357 Oct 13 03:14 output.list
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:14 runtime_log
[2025-10-13 03:14:08] -rw------- 1 boinc boinc   1054720 Oct 13 03:14 result.tar.gz
[2025-10-13 03:14:08] -rw------- 1 boinc boinc       661 Oct 13 03:14 zn0KDmFTAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0mjNDmcjmGln.diag
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc      8792 Oct 13 03:14 runtime_log.err
[2025-10-13 03:14:08] -rw-r--r-- 1 boinc boinc     10608 Oct 13 03:14 stderr.txt
[2025-10-13 03:14:08] HITS file was successfully produced:
[2025-10-13 03:14:08] -rw------- 1 boinc boinc 187620675 Oct 13 03:13 shared/HITS.pool.root.1
[2025-10-13 03:14:08]  *** Contents of shared directory: ***
[2025-10-13 03:14:08] total 400044
[2025-10-13 03:14:08] -rw-r--r-- 2 boinc boinc 220365281 Oct 13 01:46 ATLAS.root_0
[2025-10-13 03:14:08] -rw-r--r-- 2 boinc boinc    569681 Oct 13 01:46 input.tar.gz
[2025-10-13 03:14:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:46 start_atlas.sh
[2025-10-13 03:14:08] -rw------- 1 boinc boinc 187620675 Oct 13 03:13 HITS.pool.root.1
[2025-10-13 03:14:08] -rw------- 1 boinc boinc   1054720 Oct 13 03:14 result.tar.gz
03:14:10 (3098070): run_atlas exited; CPU time 14907.507826
03:14:10 (3098070): called boinc_finish(0)

</stderr_txt>
]]>

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