Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:07:28 (2329817): wrapper (7.7.26015): starting
19:07:28 (2329817): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 19:07:28] Arguments: --nthreads 3
[2025-10-12 19:07:28] Threads: 3
[2025-10-12 19:07:28] Checking for CVMFS
[2025-10-12 19:07:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:07:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:07:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:07:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:07:28] 2.9.2.0 962579 4522 85504 151627 1 57 2804605 36864000 0 130560 0 3610498 99.991 153614 842 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 19:07:28] CVMFS is ok
[2025-10-12 19:07:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:07:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:07:28] Further information can be found at the LHC@home message board.
[2025-10-12 19:07:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:07:28] Checking for apptainer binary...
[2025-10-12 19:07:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 19:07:28] Running /usr/bin/apptainer --version
[2025-10-12 19:07:28] apptainer version 1.4.1-1.1
[2025-10-12 19:07:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:07:28] thA330b
[2025-10-12 19:07:28] apptainer works
[2025-10-12 19:07:28] Set ATHENA_PROC_NUMBER=3
[2025-10-12 19:07:28] Set ATHENA_CORE_NUMBER=3
[2025-10-12 19:07:28] Starting ATLAS job with PandaID=6839927831
[2025-10-12 19:07:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:29:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:29:48] 2025-10-12 18:29:17,517 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:29:48] 2025-10-12 18:29:17,517 | INFO     | collected zombie processes
[2025-10-12 20:29:48] 2025-10-12 18:29:17,517 | INFO     | will attempt to kill all subprocesses of pid=2339967
[2025-10-12 20:29:48] 2025-10-12 18:29:17,566 | INFO     | process IDs to be killed: [2339967] (in reverse order)
[2025-10-12 20:29:48] 2025-10-12 18:29:17,591 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:29:48] 2025-10-12 18:29:17,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:29:48] 2025-10-12 18:29:17,593 | INFO     | did not find any defunct processes belonging to 2339967
[2025-10-12 20:29:48] 2025-10-12 18:29:17,595 | INFO     | did not find any defunct processes belonging to 2339967
[2025-10-12 20:29:48] 2025-10-12 18:29:17,595 | INFO     | ready for new job
[2025-10-12 20:29:48] 2025-10-12 18:29:17,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:29:48] 2025-10-12 18:29:17,595 | INFO     | ***************************************
[2025-10-12 20:29:48] 2025-10-12 18:29:17,596 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:29:48] 2025-10-12 18:29:17,596 | INFO     | ***************************************
[2025-10-12 20:29:48] 2025-10-12 18:29:17,596 | INFO     | 
[2025-10-12 20:29:48] 2025-10-12 18:29:17,596 | INFO     | architecture information:
[2025-10-12 20:29:48] 2025-10-12 18:29:17,596 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:29:48] 2025-10-12 18:29:17,605 | INFO     | cat /etc/os-release:
[2025-10-12 20:29:48] NAME="CentOS Linux"
[2025-10-12 20:29:48] VERSION="7 (Core)"
[2025-10-12 20:29:48] ID="centos"
[2025-10-12 20:29:48] ID_LIKE="rhel fedora"
[2025-10-12 20:29:48] VERSION_ID="7"
[2025-10-12 20:29:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:29:48] ANSI_COLOR="0;31"
[2025-10-12 20:29:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:29:48] HOME_URL="https://www.centos.org/"
[2025-10-12 20:29:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:29:48] 
[2025-10-12 20:29:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:29:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:29:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:29:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:29:48] 
[2025-10-12 20:29:48] 2025-10-12 18:29:17,605 | INFO     | ***************************************
[2025-10-12 20:29:48] 2025-10-12 18:29:18,108 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | INFO     | sufficient remaining disk space (259152412672 B)
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | INFO     | update_server=False
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:29:48] 2025-10-12 18:29:18,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:29:48] 2025-10-12 18:29:18,121 | INFO     | aborting loop
[2025-10-12 20:29:48] 2025-10-12 18:29:18,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:29:48] 2025-10-12 18:29:18,973 | INFO     | all data control threads have been joined
[2025-10-12 20:29:48] 2025-10-12 18:29:19,124 | INFO     | all job control threads have been joined
[2025-10-12 20:29:48] 2025-10-12 18:29:19,124 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:19,126 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:19,126 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:19,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:29:48] 2025-10-12 18:29:19,462 | INFO     | all payload control threads have been joined
[2025-10-12 20:29:48] 2025-10-12 18:29:19,862 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:19,974 | INFO     | [data] control thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,087 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,113 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,123 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,124 | INFO     | [job] validate thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,129 | INFO     | [job] control thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,468 | INFO     | [payload] control thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,520 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,586 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:20,909 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:23,437 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:28,651 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:29:48] 2025-10-12 18:29:29,657 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:29:48] 2025-10-12 18:29:39,921 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:29:48] 2025-10-12 18:29:41,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470832523072)>', '<ExcThread(monitor, started 140470487328512)>']
[2025-10-12 20:29:48] 2025-10-12 18:29:46,235 | INFO     | all workflow threads have been joined
[2025-10-12 20:29:48] 2025-10-12 18:29:46,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:29:48] 2025-10-12 18:29:46,235 | INFO     | traces error code: 0
[2025-10-12 20:29:48] 2025-10-12 18:29:46,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:29:48] 2025-10-12 18:29:47,982 | INFO     | PID=2333537 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:29:48] 2025-10-12 18:29:47,983 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:29:48] 2025-10-12 18:29:47,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:29:48] 2025-10-12 18:29:47,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:29:48] 2025-10-12 18:29:47,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:29:48] 2025-10-12 18:29:47,983 | INFO     | [monitor] control thread has ended
[2025-10-12 20:29:48] 2025-10-12 18:29:48,030 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:29:48] 2025-10-12 18:29:48,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:29:48] 2025-10-12 18:29:48,034 [wrapper] pilotpid: 2333537
[2025-10-12 20:29:48] 2025-10-12 18:29:48,036 [wrapper] Pilot exit status: 0
[2025-10-12 20:29:48] 2025-10-12 18:29:48,044 [wrapper] pandaids: 6839927831
[2025-10-12 20:29:48] 2025-10-12 18:29:48,060 [wrapper] cleanup supervisor_pilot 2351957 2333538
[2025-10-12 20:29:48] 2025-10-12 18:29:48,063 [wrapper] Test setup, not cleaning
[2025-10-12 20:29:48] 2025-10-12 18:29:48,065 [wrapper] apfmon messages muted
[2025-10-12 20:29:48] 2025-10-12 18:29:48,067 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:29:48] 2025-10-12 18:29:48,069 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:29:48]  *** Error codes and diagnostics ***
[2025-10-12 20:29:48]     "exeErrorCode": 0,
[2025-10-12 20:29:48]     "exeErrorDiag": "",
[2025-10-12 20:29:48]     "pilotErrorCode": 0,
[2025-10-12 20:29:48]     "pilotErrorDiag": "",
[2025-10-12 20:29:48]  *** Listing of results directory ***
[2025-10-12 20:29:48] total 412988
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc    557409 Oct 12 13:23 pilot3.tar.gz
[2025-10-12 20:29:48] -rwx------ 1 boinc boinc     36292 Oct 12 13:46 runpilot2-wrapper.sh
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:46 queuedata.json
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:29:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:07 run_atlas
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:07 job.xml
[2025-10-12 20:29:48] -rw-r--r-- 2 boinc boinc 219524047 Oct 12 19:07 EVNT.46676267._001450.pool.root.1
[2025-10-12 20:29:48] -rw-r--r-- 2 boinc boinc    569682 Oct 12 19:07 input.tar.gz
[2025-10-12 20:29:48] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:07 start_atlas.sh
[2025-10-12 20:29:48] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:07 shared
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:07 boinc_setup_complete
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc      6439 Oct 12 19:07 init_data.xml
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:07 boinc_lockfile
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc      2550 Oct 12 19:07 pandaJob.out
[2025-10-12 20:29:48] -rw------- 1 boinc boinc    975528 Oct 12 19:07 agis_schedconf.cvmfs.json
[2025-10-12 20:29:48] -rw------- 1 boinc boinc   1560580 Oct 12 19:07 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:29:48] drwx------ 5 boinc boinc      4096 Oct 12 19:07 pilot3
[2025-10-12 20:29:48] -rw------- 1 boinc boinc 197556749 Oct 12 20:28 HITS.46676269._077370.pool.root.1
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc       530 Oct 12 20:28 boinc_task_state.xml
[2025-10-12 20:29:48] -rw------- 1 boinc boinc        95 Oct 12 20:28 pilot_heartbeat.json
[2025-10-12 20:29:48] -rw------- 1 boinc boinc      1017 Oct 12 20:29 memory_monitor_summary.json
[2025-10-12 20:29:48] -rw------- 1 boinc boinc    243027 Oct 12 20:29 log.46676269._077370.job.log.tgz.1
[2025-10-12 20:29:48] -rw------- 1 boinc boinc      7770 Oct 12 20:29 heartbeat.json
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:29 wrapper_checkpoint.txt
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:29 boinc_mmap_file
[2025-10-12 20:29:48] -rw------- 1 boinc boinc       747 Oct 12 20:29 pilotlog.txt
[2025-10-12 20:29:48] -rw------- 1 boinc boinc    720903 Oct 12 20:29 log.46676269._077370.job.log.1
[2025-10-12 20:29:48] -rw------- 1 boinc boinc       357 Oct 12 20:29 output.list
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:29 runtime_log
[2025-10-12 20:29:48] -rw------- 1 boinc boinc    983040 Oct 12 20:29 result.tar.gz
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc      8782 Oct 12 20:29 runtime_log.err
[2025-10-12 20:29:48] -rw------- 1 boinc boinc       659 Oct 12 20:29 gPaNDmwh9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmhmTMDmybwv2m.diag
[2025-10-12 20:29:48] -rw-r--r-- 1 boinc boinc     10507 Oct 12 20:29 stderr.txt
[2025-10-12 20:29:48] HITS file was successfully produced:
[2025-10-12 20:29:48] -rw------- 1 boinc boinc 197556749 Oct 12 20:28 shared/HITS.pool.root.1
[2025-10-12 20:29:48]  *** Contents of shared directory: ***
[2025-10-12 20:29:48] total 408852
[2025-10-12 20:29:48] -rw-r--r-- 2 boinc boinc 219524047 Oct 12 19:07 ATLAS.root_0
[2025-10-12 20:29:48] -rw-r--r-- 2 boinc boinc    569682 Oct 12 19:07 input.tar.gz
[2025-10-12 20:29:48] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:07 start_atlas.sh
[2025-10-12 20:29:48] -rw------- 1 boinc boinc 197556749 Oct 12 20:28 HITS.pool.root.1
[2025-10-12 20:29:48] -rw------- 1 boinc boinc    983040 Oct 12 20:29 result.tar.gz
20:29:50 (2329817): run_atlas exited; CPU time 14030.575389
20:29:50 (2329817): called boinc_finish(0)

</stderr_txt>
]]>

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