Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
20:25:53 (2273942): wrapper (7.7.26015): starting
20:25:53 (2273942): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:25:53] Arguments: --nthreads 12
[2025-10-12 20:25:53] Threads: 12
[2025-10-12 20:25:53] Checking for CVMFS
[2025-10-12 20:25:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:25:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:25:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:25:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:25:54] 2.13.2.0 4637 1958 51312 151631 1 188 3030195 4096000 917 130560 0 6374909 99.997 72286 468 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 20:25:54] CVMFS is ok
[2025-10-12 20:25:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:25:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 20:25:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 20:25:54] Further information can be found at the LHC@home message board.
[2025-10-12 20:25:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:25:54] Checking for apptainer binary...
[2025-10-12 20:25:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:25:54] Running /usr/bin/apptainer --version
[2025-10-12 20:25:54] apptainer version 1.4.3
[2025-10-12 20:25:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:25:54] JM4
[2025-10-12 20:25:54] apptainer works
[2025-10-12 20:25:54] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:25:54] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:25:54] Starting ATLAS job with PandaID=6839928889
[2025-10-12 20:25:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:03:09]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:03:09]  protocol_id=None
[2025-10-12 21:03:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 21:03:09]  replicas=None
[2025-10-12 21:03:09]  scope=mc23_13p6TeV
[2025-10-12 21:03:09]  status=None
[2025-10-12 21:03:09]  status_code=0
[2025-10-12 21:03:09]  storage_token=
[2025-10-12 21:03:09]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6839928889/log.46676269._078026.job.log.tgz.1
[2025-10-12 21:03:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/8c/log.46676269._078026.job.log.tgz.1
[2025-10-12 21:03:09]  workdir=None
[2025-10-12 21:03:09] ]
[2025-10-12 21:03:09] 2025-10-12 19:02:00,619 | INFO     | transferring file log.46676269._078026.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6839928889/log.46676269._078026.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 21:03:09] 2025-10-12 19:02:00,619 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6839928889/log.46676269._078026.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-12 21:03:09] 2025-10-12 19:02:00,634 | INFO     | adding to output.list: log.46676269._078026.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/8c/log.46676269._078026.job.log.tg
[2025-10-12 21:03:09] 2025-10-12 19:02:00,634 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 21:03:09] 2025-10-12 19:02:00,634 | INFO     | summary of transferred files:
[2025-10-12 21:03:09] 2025-10-12 19:02:00,634 | INFO     |  -- lfn=log.46676269._078026.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 21:03:09] 2025-10-12 19:02:00,635 | INFO     | stage-out finished correctly
[2025-10-12 21:03:09] 2025-10-12 19:02:00,694 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 21:03:09] 2025-10-12 19:02:01,389 | INFO     | time since job start (2160s) is within the limit (172800.0s)
[2025-10-12 21:03:09] 2025-10-12 19:02:02,593 | INFO     | job 6839928889 has state=finished
[2025-10-12 21:03:09] 2025-10-12 19:02:02,594 | INFO     | preparing for final server update for job 6839928889 in state='finished'
[2025-10-12 21:03:09] 2025-10-12 19:02:02,594 | INFO     | this job has now completed (state=finished)
[2025-10-12 21:03:09] 2025-10-12 19:02:02,594 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 21:03:09] 2025-10-12 19:02:02,594 | INFO     | log transfer has been attempted: DONE
[2025-10-12 21:03:09] 2025-10-12 19:02:02,594 | INFO     | job 6839928889 has finished - writing final server update
[2025-10-12 21:03:09] 2025-10-12 19:02:02,594 | INFO     | total number of processed events: 400 (read)
[2025-10-12 21:03:09] 2025-10-12 19:02:02,595 | INFO     | executing command: lscpu
[2025-10-12 21:03:09] 2025-10-12 19:02:02,618 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 21:03:09] 2025-10-12 19:02:02,857 | INFO     | monitor loop #168: job 0:6839928889 is in state 'finished'
[2025-10-12 21:03:09] 2025-10-12 19:02:02,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:03:09] 2025-10-12 19:02:03,394 | INFO     | time since job start (2162s) is within the limit (172800.0s)
[2025-10-12 21:03:09] 2025-10-12 19:02:05,360 | INFO     | monitor loop #169: job 0:6839928889 is in state 'finished'
[2025-10-12 21:03:09] 2025-10-12 19:02:05,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 21:03:09] 2025-10-12 19:02:05,399 | INFO     | time since job start (2164s) is within the limit (172800.0s)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,269 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 21:03:09] 2025-10-12 19:02:07,272 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3820.9027083333335
[2025-10-12 21:03:09] 2025-10-12 19:02:07,276 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6839928889/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,276 | INFO     | extracted standard info from prmon json
[2025-10-12 21:03:09] 2025-10-12 19:02:07,276 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 21:03:09] 2025-10-12 19:02:07,276 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 21:03:09] 2025-10-12 19:02:07,277 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 21:03:09] 2025-10-12 19:02:07,277 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | fitting pss+swap vs Time
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | sum of square deviations: 7553630.0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | sum of deviations: -1147475941.0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | mean x: 1760294739.0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | mean y: 2782786.4137931033
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | -- intersect: 267410090540.616
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | intersect: 267410090540.616
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | chi2: 0.009987053259938906
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | -- intersect: 267410090540.616
[2025-10-12 21:03:09] 2025-10-12 19:02:07,278 | INFO     | current memory leak: -151.91 B/s (using 29 data points, chi2=0.01)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | could have reported an average CPU frequency of 3880 MHz (5 samples)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | ..............................
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . Timing measurements:
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . get job = 0 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . initial setup = 1 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . payload setup = 2 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . stage-in = 0 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . payload execution = 2139 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . stage-out = 0 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | . log creation = 0 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,279 | INFO     | ..............................
[2025-10-12 21:03:09] 2025-10-12 19:02:07,405 | INFO     | time since job start (2166s) is within the limit (172800.0s)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | 
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | job summary report
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | --------------------------------------------------
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | PanDA job id: 6839928889
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | task id: 46676269
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | errors: (none)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | pilot state: finished 
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | transexitcode: 0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | exeerrorcode: 0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | exeerrordiag: 
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | exitcode: 0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,740 | INFO     | exitmsg: OK
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | cpuconsumptiontime: 23132 s
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | nevents: 400
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | neventsw: 0
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | pid: 2284325
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | pgrp: 2284325
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | corecount: 12
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | event service: False
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | sizes: {0: 2348864, 1: 2348864, 3: 2349154, 11: 2349182, 2146: 2383272, 2153: 2383442}
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | --------------------------------------------------
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | 
[2025-10-12 21:03:09] 2025-10-12 19:02:07,741 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:03:09] 2025-10-12 19:02:07,758 | INFO     | job 6839928889 has completed (purged errors)
[2025-10-12 21:03:09] 2025-10-12 19:02:07,758 | INFO     | overall cleanup function is called
[2025-10-12 21:03:09] 2025-10-12 19:02:08,766 | INFO     | --- collectZombieJob: --- 10, [2284325]
[2025-10-12 21:03:09] 2025-10-12 19:02:08,766 | INFO     | zombie collector waiting for pid 2284325
[2025-10-12 21:03:09] 2025-10-12 19:02:08,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:03:09] 2025-10-12 19:02:08,766 | INFO     | collected zombie processes
[2025-10-12 21:03:09] 2025-10-12 19:02:08,766 | INFO     | will attempt to kill all subprocesses of pid=2284325
[2025-10-12 21:03:09] 2025-10-12 19:02:08,862 | INFO     | process IDs to be killed: [2284325] (in reverse order)
[2025-10-12 21:03:09] 2025-10-12 19:02:08,901 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:03:09] 2025-10-12 19:02:08,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:03:09] 2025-10-12 19:02:08,904 | INFO     | did not find any defunct processes belonging to 2284325
[2025-10-12 21:03:09] 2025-10-12 19:02:08,907 | INFO     | did not find any defunct processes belonging to 2284325
[2025-10-12 21:03:09] 2025-10-12 19:02:08,907 | INFO     | ready for new job
[2025-10-12 21:03:09] 2025-10-12 19:02:08,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:03:09] 2025-10-12 19:02:08,908 | INFO     | ***************************************
[2025-10-12 21:03:09] 2025-10-12 19:02:08,908 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:03:09] 2025-10-12 19:02:08,908 | INFO     | ***************************************
[2025-10-12 21:03:09] 2025-10-12 19:02:08,908 | INFO     | 
[2025-10-12 21:03:09] 2025-10-12 19:02:08,909 | INFO     | architecture information:
[2025-10-12 21:03:09] 2025-10-12 19:02:08,910 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:03:09] 2025-10-12 19:02:08,920 | INFO     | cat /etc/os-release:
[2025-10-12 21:03:09] NAME="CentOS Linux"
[2025-10-12 21:03:09] VERSION="7 (Core)"
[2025-10-12 21:03:09] ID="centos"
[2025-10-12 21:03:09] ID_LIKE="rhel fedora"
[2025-10-12 21:03:09] VERSION_ID="7"
[2025-10-12 21:03:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:03:09] ANSI_COLOR="0;31"
[2025-10-12 21:03:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:03:09] HOME_URL="https://www.centos.org/"
[2025-10-12 21:03:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:03:09] 
[2025-10-12 21:03:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:03:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:03:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:03:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:03:09] 
[2025-10-12 21:03:09] 2025-10-12 19:02:08,920 | INFO     | ***************************************
[2025-10-12 21:03:09] 2025-10-12 19:02:09,423 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-12 21:03:09] 2025-10-12 19:02:09,434 | INFO     | sufficient remaining disk space (72375861248 B)
[2025-10-12 21:03:09] 2025-10-12 19:02:09,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:03:09] 2025-10-12 19:02:09,434 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:03:09] 2025-10-12 19:02:09,434 | INFO     | update_server=False
[2025-10-12 21:03:09] 2025-10-12 19:02:09,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:03:09] 2025-10-12 19:02:09,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:03:09] 2025-10-12 19:02:09,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:03:09] 2025-10-12 19:02:09,435 | INFO     | aborting loop
[2025-10-12 21:03:09] 2025-10-12 19:02:09,759 | INFO     | all data control threads have been joined
[2025-10-12 21:03:09] 2025-10-12 19:02:10,064 | INFO     | all job control threads have been joined
[2025-10-12 21:03:09] 2025-10-12 19:02:10,335 | INFO     | all payload control threads have been joined
[2025-10-12 21:03:09] 2025-10-12 19:02:10,440 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:10,440 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:10,449 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:10,641 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:10,764 | INFO     | [data] control thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:10,797 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:10,861 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,069 | INFO     | [job] control thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,259 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:03:09] 2025-10-12 19:02:11,340 | INFO     | [payload] control thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,437 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,633 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,701 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,792 | INFO     | [job] validate thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:11,844 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:12,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:03:09] 2025-10-12 19:02:13,358 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:15,265 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:03:09] 2025-10-12 19:02:40,582 | INFO     | PID=2277753 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:03:09] 2025-10-12 19:02:40,582 | INFO     | .. there are 2 such processes running
[2025-10-12 21:03:09] 2025-10-12 19:02:40,582 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:03:09] 2025-10-12 19:02:40,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:03:09] 2025-10-12 19:02:40,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:03:09] 2025-10-12 19:03:04,348 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:03:09] 2025-10-12 19:03:04,414 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131135463954240)>', '<ExcThread(monitor, started 131134537066240)>']
[2025-10-12 21:03:09] 2025-10-12 19:03:04,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:03:09] 2025-10-12 19:03:04,699 | INFO     | [monitor] control thread has ended
[2025-10-12 21:03:09] 2025-10-12 19:03:09,435 | INFO     | all workflow threads have been joined
[2025-10-12 21:03:09] 2025-10-12 19:03:09,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:03:09] 2025-10-12 19:03:09,436 | INFO     | traces error code: 0
[2025-10-12 21:03:09] 2025-10-12 19:03:09,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:03:09] 2025-10-12 19:03:09,496 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:03:09] 2025-10-12 19:03:09,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:03:09] 2025-10-12 19:03:09,500 [wrapper] pilotpid: 2277753
[2025-10-12 21:03:09] 2025-10-12 19:03:09,502 [wrapper] Pilot exit status: 0
[2025-10-12 21:03:09] 2025-10-12 19:03:09,509 [wrapper] pandaids: 6839928889
[2025-10-12 21:03:09] 2025-10-12 19:03:09,534 [wrapper] cleanup supervisor_pilot 2299641 2277754
[2025-10-12 21:03:09] 2025-10-12 19:03:09,536 [wrapper] Test setup, not cleaning
[2025-10-12 21:03:09] 2025-10-12 19:03:09,538 [wrapper] apfmon messages muted
[2025-10-12 21:03:09] 2025-10-12 19:03:09,540 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:03:09] 2025-10-12 19:03:09,542 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:03:09]  *** Error codes and diagnostics ***
[2025-10-12 21:03:09]     "exeErrorCode": 0,
[2025-10-12 21:03:09]     "exeErrorDiag": "",
[2025-10-12 21:03:09]     "pilotErrorCode": 0,
[2025-10-12 21:03:09]     "pilotErrorDiag": "",
[2025-10-12 21:03:09]  *** Listing of results directory ***
[2025-10-12 21:03:09] total 401680
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc    557409 oct 12 14:10 pilot3.tar.gz
[2025-10-12 21:03:09] -rwx------ 1 boinc boinc     36292 oct 12 14:20 runpilot2-wrapper.sh
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc      5112 oct 12 14:20 queuedata.json
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc       100 oct 12 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:03:09] -rwxr-xr-x 1 boinc boinc      7986 oct 12 20:25 run_atlas
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc       105 oct 12 20:25 job.xml
[2025-10-12 21:03:09] -rw-r--r-- 2 boinc boinc     15120 oct 12 20:25 start_atlas.sh
[2025-10-12 21:03:09] drwxrwx--x 1 boinc boinc        76 oct 12 20:25 shared
[2025-10-12 21:03:09] -rw-r--r-- 2 boinc boinc    569677 oct 12 20:25 input.tar.gz
[2025-10-12 21:03:09] -rw-r--r-- 2 boinc boinc 219787073 oct 12 20:25 EVNT.46676267._003759.pool.root.1
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc         0 oct 12 20:25 boinc_setup_complete
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc         0 oct 12 20:25 boinc_lockfile
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc      2550 oct 12 20:25 pandaJob.out
[2025-10-12 21:03:09] -rw------- 1 boinc boinc    975528 oct 12 20:25 agis_schedconf.cvmfs.json
[2025-10-12 21:03:09] -rw------- 1 boinc boinc   1560580 oct 12 20:26 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:03:09] drwx------ 1 boinc boinc       414 oct 12 20:26 pilot3
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc      9260 oct 12 20:34 init_data.xml
[2025-10-12 21:03:09] -rw------- 1 boinc boinc 186209377 oct 12 21:01 HITS.46676269._078026.pool.root.1
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc       529 oct 12 21:01 boinc_task_state.xml
[2025-10-12 21:03:09] -rw------- 1 boinc boinc      1015 oct 12 21:01 memory_monitor_summary.json
[2025-10-12 21:03:09] -rw------- 1 boinc boinc    362161 oct 12 21:02 log.46676269._078026.job.log.tgz.1
[2025-10-12 21:03:09] -rw------- 1 boinc boinc      7730 oct 12 21:02 heartbeat.json
[2025-10-12 21:03:09] -rw------- 1 boinc boinc        95 oct 12 21:02 pilot_heartbeat.json
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc        27 oct 12 21:02 wrapper_checkpoint.txt
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc      8192 oct 12 21:02 boinc_mmap_file
[2025-10-12 21:03:09] -rw------- 1 boinc boinc      4830 oct 12 21:03 pilotlog.txt
[2025-10-12 21:03:09] -rw------- 1 boinc boinc    354505 oct 12 21:03 log.46676269._078026.job.log.1
[2025-10-12 21:03:09] -rw------- 1 boinc boinc       357 oct 12 21:03 output.list
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc       620 oct 12 21:03 runtime_log
[2025-10-12 21:03:09] -rw------- 1 boinc boinc    737280 oct 12 21:03 result.tar.gz
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc      8731 oct 12 21:03 runtime_log.err
[2025-10-12 21:03:09] -rw------- 1 boinc boinc       637 oct 12 21:03 jF0MDmDFAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtkjNDmJR5awn.diag
[2025-10-12 21:03:09] -rw-r--r-- 1 boinc boinc     21834 oct 12 21:03 stderr.txt
[2025-10-12 21:03:09] HITS file was successfully produced:
[2025-10-12 21:03:09] -rw------- 1 boinc boinc 186209377 oct 12 21:01 shared/HITS.pool.root.1
[2025-10-12 21:03:09]  *** Contents of shared directory: ***
[2025-10-12 21:03:09] total 397780
[2025-10-12 21:03:09] -rw-r--r-- 2 boinc boinc     15120 oct 12 20:25 start_atlas.sh
[2025-10-12 21:03:09] -rw-r--r-- 2 boinc boinc    569677 oct 12 20:25 input.tar.gz
[2025-10-12 21:03:09] -rw-r--r-- 2 boinc boinc 219787073 oct 12 20:25 ATLAS.root_0
[2025-10-12 21:03:09] -rw------- 1 boinc boinc 186209377 oct 12 21:01 HITS.pool.root.1
[2025-10-12 21:03:09] -rw------- 1 boinc boinc    737280 oct 12 21:03 result.tar.gz
21:03:11 (2273942): run_atlas exited; CPU time 23139.174031
21:03:11 (2273942): called boinc_finish(0)

</stderr_txt>
]]>

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