Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:40:00 (2780463): wrapper (7.7.26015): starting
08:40:00 (2780463): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 08:40:00] Arguments: --nthreads 3
[2025-10-13 08:40:00] Threads: 3
[2025-10-13 08:40:00] Checking for CVMFS
[2025-10-13 08:40:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:40:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:40:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:40:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:40:00] 2.9.2.0 1182477 5518 83336 151652 2 56 3863867 36864000 0 130560 0 4210365 99.991 191905 868 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:40:00] CVMFS is ok
[2025-10-13 08:40:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:40:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:40:00] Further information can be found at the LHC@home message board.
[2025-10-13 08:40:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:40:00] Checking for apptainer binary...
[2025-10-13 08:40:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:40:00] Running /usr/bin/apptainer --version
[2025-10-13 08:40:00] apptainer version 1.4.1-1.1
[2025-10-13 08:40:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:40:00] thA332
[2025-10-13 08:40:00] apptainer works
[2025-10-13 08:40:00] Set ATHENA_PROC_NUMBER=3
[2025-10-13 08:40:00] Set ATHENA_CORE_NUMBER=3
[2025-10-13 08:40:00] Starting ATLAS job with PandaID=6839866122
[2025-10-13 08:40:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:06:18]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:06:18] 2025-10-13 08:05:52,635 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 10:06:18] 2025-10-13 08:05:52,636 | INFO     | job 6839866122 has completed (purged errors)
[2025-10-13 10:06:18] 2025-10-13 08:05:52,636 | INFO     | overall cleanup function is called
[2025-10-13 10:06:18] 2025-10-13 08:05:53,642 | INFO     | --- collectZombieJob: --- 10, [2790623]
[2025-10-13 10:06:18] 2025-10-13 08:05:53,642 | INFO     | zombie collector waiting for pid 2790623
[2025-10-13 10:06:18] 2025-10-13 08:05:53,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 10:06:18] 2025-10-13 08:05:53,642 | INFO     | collected zombie processes
[2025-10-13 10:06:18] 2025-10-13 08:05:53,642 | INFO     | will attempt to kill all subprocesses of pid=2790623
[2025-10-13 10:06:18] 2025-10-13 08:05:53,687 | INFO     | process IDs to be killed: [2790623] (in reverse order)
[2025-10-13 10:06:18] 2025-10-13 08:05:53,711 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:06:18] 2025-10-13 08:05:53,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:06:18] 2025-10-13 08:05:53,712 | INFO     | did not find any defunct processes belonging to 2790623
[2025-10-13 10:06:18] 2025-10-13 08:05:53,713 | INFO     | did not find any defunct processes belonging to 2790623
[2025-10-13 10:06:18] 2025-10-13 08:05:53,713 | INFO     | ready for new job
[2025-10-13 10:06:18] 2025-10-13 08:05:53,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:06:18] 2025-10-13 08:05:53,714 | INFO     | ***************************************
[2025-10-13 10:06:18] 2025-10-13 08:05:53,714 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:06:18] 2025-10-13 08:05:53,714 | INFO     | ***************************************
[2025-10-13 10:06:18] 2025-10-13 08:05:53,714 | INFO     | 
[2025-10-13 10:06:18] 2025-10-13 08:05:53,715 | INFO     | architecture information:
[2025-10-13 10:06:18] 2025-10-13 08:05:53,715 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:06:18] 2025-10-13 08:05:53,723 | INFO     | cat /etc/os-release:
[2025-10-13 10:06:18] NAME="CentOS Linux"
[2025-10-13 10:06:18] VERSION="7 (Core)"
[2025-10-13 10:06:18] ID="centos"
[2025-10-13 10:06:18] ID_LIKE="rhel fedora"
[2025-10-13 10:06:18] VERSION_ID="7"
[2025-10-13 10:06:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:06:18] ANSI_COLOR="0;31"
[2025-10-13 10:06:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:06:18] HOME_URL="https://www.centos.org/"
[2025-10-13 10:06:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:06:18] 
[2025-10-13 10:06:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:06:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:06:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:06:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:06:18] 
[2025-10-13 10:06:18] 2025-10-13 08:05:53,724 | INFO     | ***************************************
[2025-10-13 10:06:18] 2025-10-13 08:05:54,227 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:06:18] 2025-10-13 08:05:54,239 | INFO     | sufficient remaining disk space (255630245888 B)
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | INFO     | update_server=False
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:06:18] 2025-10-13 08:05:54,240 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:06:18] 2025-10-13 08:05:54,241 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:06:18] 2025-10-13 08:05:54,241 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:06:18] 2025-10-13 08:05:54,244 | INFO     | all data control threads have been joined
[2025-10-13 10:06:18] 2025-10-13 08:05:54,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:06:18] 2025-10-13 08:05:54,944 | INFO     | aborting loop
[2025-10-13 10:06:18] 2025-10-13 08:05:54,950 | INFO     | all job control threads have been joined
[2025-10-13 10:06:18] 2025-10-13 08:05:55,121 | INFO     | all payload control threads have been joined
[2025-10-13 10:06:18] 2025-10-13 08:05:55,245 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,245 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,249 | INFO     | [data] control thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,263 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,264 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,411 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,858 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,950 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:55,955 | INFO     | [job] control thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:56,126 | INFO     | [payload] control thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:56,133 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:56,246 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:56,388 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:05:56,601 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:06:18] 2025-10-13 08:05:56,693 | INFO     | [job] validate thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:06:00,608 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:06:04,924 | INFO     | job.realtimelogging is not enabled
[2025-10-13 10:06:18] 2025-10-13 08:06:05,930 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:06:18] 2025-10-13 08:06:12,165 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:06:18] 2025-10-13 08:06:13,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513263183680)>', '<ExcThread(monitor, started 140512774305536)>']
[2025-10-13 10:06:18] 2025-10-13 08:06:13,337 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:06:18] 2025-10-13 08:06:13,338 | INFO     | [monitor] control thread has ended
[2025-10-13 10:06:18] 2025-10-13 08:06:18,359 | INFO     | all workflow threads have been joined
[2025-10-13 10:06:18] 2025-10-13 08:06:18,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:06:18] 2025-10-13 08:06:18,359 | INFO     | traces error code: 0
[2025-10-13 10:06:18] 2025-10-13 08:06:18,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:06:18] 2025-10-13 08:06:18,410 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:06:18] 2025-10-13 08:06:18,412 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:06:18] 2025-10-13 08:06:18,415 [wrapper] pilotpid: 2784185
[2025-10-13 10:06:18] 2025-10-13 08:06:18,417 [wrapper] Pilot exit status: 0
[2025-10-13 10:06:18] 2025-10-13 08:06:18,424 [wrapper] pandaids: 6839866122
[2025-10-13 10:06:18] 2025-10-13 08:06:18,440 [wrapper] cleanup supervisor_pilot 2802715 2784186
[2025-10-13 10:06:18] 2025-10-13 08:06:18,443 [wrapper] Test setup, not cleaning
[2025-10-13 10:06:18] 2025-10-13 08:06:18,445 [wrapper] apfmon messages muted
[2025-10-13 10:06:18] 2025-10-13 08:06:18,447 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:06:18] 2025-10-13 08:06:18,450 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:06:18]  *** Error codes and diagnostics ***
[2025-10-13 10:06:18]     "exeErrorCode": 0,
[2025-10-13 10:06:18]     "exeErrorDiag": "",
[2025-10-13 10:06:18]     "pilotErrorCode": 0,
[2025-10-13 10:06:18]     "pilotErrorDiag": "",
[2025-10-13 10:06:18]  *** Listing of results directory ***
[2025-10-13 10:06:18] total 414956
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc    557409 Oct 12 11:51 pilot3.tar.gz
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:08 queuedata.json
[2025-10-13 10:06:18] -rwx------ 1 boinc boinc     36292 Oct 12 12:09 runpilot2-wrapper.sh
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:06:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:40 run_atlas
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:40 job.xml
[2025-10-13 10:06:18] -rw-r--r-- 2 boinc boinc 220893644 Oct 13 08:40 EVNT.46676267._003610.pool.root.1
[2025-10-13 10:06:18] -rw-r--r-- 2 boinc boinc    569680 Oct 13 08:40 input.tar.gz
[2025-10-13 10:06:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:40 start_atlas.sh
[2025-10-13 10:06:18] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:40 shared
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:40 boinc_setup_complete
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc      6437 Oct 13 08:40 init_data.xml
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:40 boinc_lockfile
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc      2547 Oct 13 08:40 pandaJob.out
[2025-10-13 10:06:18] -rw------- 1 boinc boinc    972849 Oct 13 08:40 agis_schedconf.cvmfs.json
[2025-10-13 10:06:18] -rw------- 1 boinc boinc   1560580 Oct 13 08:40 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:06:18] drwx------ 5 boinc boinc      4096 Oct 13 08:40 pilot3
[2025-10-13 10:06:18] -rw------- 1 boinc boinc 198143353 Oct 13 10:05 HITS.46676269._075840.pool.root.1
[2025-10-13 10:06:18] -rw------- 1 boinc boinc        95 Oct 13 10:05 pilot_heartbeat.json
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc       529 Oct 13 10:05 boinc_task_state.xml
[2025-10-13 10:06:18] -rw------- 1 boinc boinc      1034 Oct 13 10:05 memory_monitor_summary.json
[2025-10-13 10:06:18] -rw------- 1 boinc boinc    241836 Oct 13 10:05 log.46676269._075840.job.log.tgz.1
[2025-10-13 10:06:18] -rw------- 1 boinc boinc      7761 Oct 13 10:05 heartbeat.json
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:06 wrapper_checkpoint.txt
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:06 boinc_mmap_file
[2025-10-13 10:06:18] -rw------- 1 boinc boinc      4628 Oct 13 10:06 pilotlog.txt
[2025-10-13 10:06:18] -rw------- 1 boinc boinc    753179 Oct 13 10:06 log.46676269._075840.job.log.1
[2025-10-13 10:06:18] -rw------- 1 boinc boinc       357 Oct 13 10:06 output.list
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:06 runtime_log
[2025-10-13 10:06:18] -rw------- 1 boinc boinc   1013760 Oct 13 10:06 result.tar.gz
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc      8777 Oct 13 10:06 runtime_log.err
[2025-10-13 10:06:18] -rw------- 1 boinc boinc       658 Oct 13 10:06 nbPLDm3B8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJQjNDmhKUQDn.diag
[2025-10-13 10:06:18] -rw-r--r-- 1 boinc boinc     10922 Oct 13 10:06 stderr.txt
[2025-10-13 10:06:18] HITS file was successfully produced:
[2025-10-13 10:06:18] -rw------- 1 boinc boinc 198143353 Oct 13 10:05 shared/HITS.pool.root.1
[2025-10-13 10:06:18]  *** Contents of shared directory: ***
[2025-10-13 10:06:18] total 410792
[2025-10-13 10:06:18] -rw-r--r-- 2 boinc boinc 220893644 Oct 13 08:40 ATLAS.root_0
[2025-10-13 10:06:18] -rw-r--r-- 2 boinc boinc    569680 Oct 13 08:40 input.tar.gz
[2025-10-13 10:06:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:40 start_atlas.sh
[2025-10-13 10:06:18] -rw------- 1 boinc boinc 198143353 Oct 13 10:05 HITS.pool.root.1
[2025-10-13 10:06:18] -rw------- 1 boinc boinc   1013760 Oct 13 10:06 result.tar.gz
10:06:20 (2780463): run_atlas exited; CPU time 14810.733493
10:06:20 (2780463): called boinc_finish(0)

</stderr_txt>
]]>

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