Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:40:36 (24288): wrapper (7.7.26015): starting
11:40:36 (24288): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:40:36] Arguments: --nthreads 8
[2025-10-12 11:40:36] Threads: 8
[2025-10-12 11:40:36] Checking for CVMFS
[2025-10-12 11:40:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:40:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:40:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:40:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:40:37] 2.11.2.0 2923 206037 77692 151625 3 56 15655437 20275201 1 130560 3 73536897 99.976 10744006 9999 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:40:37] CVMFS is ok
[2025-10-12 11:40:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:40:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:40:37] Further information can be found at the LHC@home message board.
[2025-10-12 11:40:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:40:37] Checking for apptainer binary...
[2025-10-12 11:40:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:40:37] Running /usr/bin/apptainer --version
[2025-10-12 11:40:37] apptainer version 1.3.2-1.el7
[2025-10-12 11:40:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:40:38] c-204-28.aglt2.org
[2025-10-12 11:40:38] apptainer works
[2025-10-12 11:40:38] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:40:38] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:40:38] Starting ATLAS job with PandaID=6833426111
[2025-10-12 11:40:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:29:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:29:12] 2025-10-12 17:28:31,875 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:29:12] 2025-10-12 17:28:31,875 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:29:12] 2025-10-12 17:28:31,877 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:29:12] 2025-10-12 17:28:31,877 | INFO     | sum of square deviations: 369281342.5
[2025-10-12 13:29:12] 2025-10-12 17:28:31,878 | INFO     | sum of deviations: -11147353469.5
[2025-10-12 13:29:12] 2025-10-12 17:28:31,878 | INFO     | mean x: 1760286890.5
[2025-10-12 13:29:12] 2025-10-12 17:28:31,878 | INFO     | mean y: 2551840.537735849
[2025-10-12 13:29:12] 2025-10-12 17:28:31,878 | INFO     | -- intersect: 53139653334.17883
[2025-10-12 13:29:12] 2025-10-12 17:28:31,878 | INFO     | intersect: 53139653334.17883
[2025-10-12 13:29:12] 2025-10-12 17:28:31,879 | INFO     | chi2: 2.3712438909618916
[2025-10-12 13:29:12] 2025-10-12 17:28:31,879 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,879 | INFO     | sum of deviations: -2920714526.000002
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | mean x: 1760286738.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | mean y: 2576210.4752475247
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | -- intersect: 16096893469.463717
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | intersect: 16096893469.463717
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | chi2: 1.6167260618877928
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | current chi2=1.6167260618877928 (change=31.8194949051837 %)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,880 | INFO     | sum of square deviations: 274312120.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,881 | INFO     | sum of deviations: -1755425974.9999979
[2025-10-12 13:29:12] 2025-10-12 17:28:31,881 | INFO     | mean x: 1760286585.5
[2025-10-12 13:29:12] 2025-10-12 17:28:31,881 | INFO     | mean y: 2580150.9791666665
[2025-10-12 13:29:12] 2025-10-12 17:28:31,881 | INFO     | -- intersect: 11267313169.814625
[2025-10-12 13:29:12] 2025-10-12 17:28:31,881 | INFO     | intersect: 11267313169.814625
[2025-10-12 13:29:12] 2025-10-12 17:28:31,882 | INFO     | chi2: 1.6200528058391068
[2025-10-12 13:29:12] 2025-10-12 17:28:31,882 | INFO     | current chi2=1.6200528058391068 (change=-0.20577041650640115 %)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,882 | INFO     | right removable region: 95
[2025-10-12 13:29:12] 2025-10-12 17:28:31,882 | INFO     | sum of square deviations: 319447850.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | sum of deviations: -27254466757.000004
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | mean x: 1760287043.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | mean y: 2600091.623762376
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | -- intersect: 150185751101.1589
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | intersect: 150185751101.1589
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | chi2: 0.8835784129596959
[2025-10-12 13:29:12] 2025-10-12 17:28:31,883 | INFO     | current chi2=0.8835784129596959 (change=62.73776745076722 %)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,884 | INFO     | sum of square deviations: 274312120.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,884 | INFO     | sum of deviations: -25417184882.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,884 | INFO     | mean x: 1760287195.5
[2025-10-12 13:29:12] 2025-10-12 17:28:31,884 | INFO     | mean y: 2593848.2708333335
[2025-10-12 13:29:12] 2025-10-12 17:28:31,885 | INFO     | -- intersect: 163107108127.2636
[2025-10-12 13:29:12] 2025-10-12 17:28:31,885 | INFO     | intersect: 163107108127.2636
[2025-10-12 13:29:12] 2025-10-12 17:28:31,885 | INFO     | chi2: 0.8784408878726896
[2025-10-12 13:29:12] 2025-10-12 17:28:31,885 | INFO     | current chi2=0.8784408878726896 (change=0.581445292421445 %)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,885 | INFO     | left removable region: 20
[2025-10-12 13:29:12] 2025-10-12 17:28:31,885 | INFO     | sum of square deviations: 130793150.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,886 | INFO     | sum of deviations: -11776089833.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,886 | INFO     | mean x: 1760287165.0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,886 | INFO     | mean y: 2613731.2933333335
[2025-10-12 13:29:12] 2025-10-12 17:28:31,886 | INFO     | -- intersect: 158491799035.85168
[2025-10-12 13:29:12] 2025-10-12 17:28:31,886 | INFO     | intersect: 158491799035.85168
[2025-10-12 13:29:12] 2025-10-12 17:28:31,886 | INFO     | chi2: 0.06675311082605623
[2025-10-12 13:29:12] 2025-10-12 17:28:31,887 | INFO     | -- intersect: 158491799035.85168
[2025-10-12 13:29:12] 2025-10-12 17:28:31,887 | INFO     | current memory leak: -90.04 B/s (using 75 data points, chi2=0.07)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,887 | INFO     | could have reported an average CPU frequency of 1943 MHz (7 samples)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,887 | INFO     | ..............................
[2025-10-12 13:29:12] 2025-10-12 17:28:31,887 | INFO     | . Timing measurements:
[2025-10-12 13:29:12] 2025-10-12 17:28:31,887 | INFO     | . get job = 0 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | . initial setup = 2 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | . payload setup = 8 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | . stage-in = 0 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | . payload execution = 6414 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | . stage-out = 0 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | . log creation = 0 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,888 | INFO     | ..............................
[2025-10-12 13:29:12] 2025-10-12 17:28:31,979 | INFO     | 
[2025-10-12 13:29:12] 2025-10-12 17:28:31,979 | INFO     | job summary report
[2025-10-12 13:29:12] 2025-10-12 17:28:31,979 | INFO     | --------------------------------------------------
[2025-10-12 13:29:12] 2025-10-12 17:28:31,980 | INFO     | PanDA job id: 6833426111
[2025-10-12 13:29:12] 2025-10-12 17:28:31,980 | INFO     | task id: 46376905
[2025-10-12 13:29:12] 2025-10-12 17:28:31,980 | INFO     | errors: (none)
[2025-10-12 13:29:12] 2025-10-12 17:28:31,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:29:12] 2025-10-12 17:28:31,980 | INFO     | pilot state: finished 
[2025-10-12 13:29:12] 2025-10-12 17:28:31,980 | INFO     | transexitcode: 0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | exeerrorcode: 0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | exeerrordiag: 
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | exitcode: 0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | exitmsg: OK
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | cpuconsumptiontime: 47876 s
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | nevents: 400
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | neventsw: 0
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | pid: 2091
[2025-10-12 13:29:12] 2025-10-12 17:28:31,981 | INFO     | pgrp: 2091
[2025-10-12 13:29:12] 2025-10-12 17:28:31,982 | INFO     | corecount: 8
[2025-10-12 13:29:12] 2025-10-12 17:28:31,982 | INFO     | event service: False
[2025-10-12 13:29:12] 2025-10-12 17:28:31,982 | INFO     | sizes: {0: 2348820, 6: 2349082, 11: 2349110, 6426: 2376108, 6427: 2385106, 6430: 2385162, 6438: 2385484}
[2025-10-12 13:29:12] 2025-10-12 17:28:31,982 | INFO     | --------------------------------------------------
[2025-10-12 13:29:12] 2025-10-12 17:28:31,982 | INFO     | 
[2025-10-12 13:29:12] 2025-10-12 17:28:31,982 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:29:12] 2025-10-12 17:28:32,012 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,013 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,013 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,013 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,013 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,013 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,015 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,015 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:29:12] 2025-10-12 17:28:32,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:29:12] 2025-10-12 17:28:32,016 | INFO     | job 6833426111 has completed (purged errors)
[2025-10-12 13:29:12] 2025-10-12 17:28:32,016 | INFO     | overall cleanup function is called
[2025-10-12 13:29:12] 2025-10-12 17:28:33,025 | INFO     | --- collectZombieJob: --- 10, [2091]
[2025-10-12 13:29:12] 2025-10-12 17:28:33,025 | INFO     | zombie collector waiting for pid 2091
[2025-10-12 13:29:12] 2025-10-12 17:28:33,026 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:29:12] 2025-10-12 17:28:33,026 | INFO     | collected zombie processes
[2025-10-12 13:29:12] 2025-10-12 17:28:33,026 | INFO     | will attempt to kill all subprocesses of pid=2091
[2025-10-12 13:29:12] 2025-10-12 17:28:33,115 | INFO     | process IDs to be killed: [2091] (in reverse order)
[2025-10-12 13:29:12] 2025-10-12 17:28:33,173 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:29:12] 2025-10-12 17:28:33,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:29:12] 2025-10-12 17:28:33,178 | INFO     | did not find any defunct processes belonging to 2091
[2025-10-12 13:29:12] 2025-10-12 17:28:33,181 | INFO     | did not find any defunct processes belonging to 2091
[2025-10-12 13:29:12] 2025-10-12 17:28:33,181 | INFO     | ready for new job
[2025-10-12 13:29:12] 2025-10-12 17:28:33,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:29:12] 2025-10-12 17:28:33,183 | INFO     | ***************************************
[2025-10-12 13:29:12] 2025-10-12 17:28:33,183 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 13:29:12] 2025-10-12 17:28:33,183 | INFO     | ***************************************
[2025-10-12 13:29:12] 2025-10-12 17:28:33,184 | INFO     | 
[2025-10-12 13:29:12] 2025-10-12 17:28:33,184 | INFO     | architecture information:
[2025-10-12 13:29:12] 2025-10-12 17:28:33,185 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:29:12] 2025-10-12 17:28:33,203 | INFO     | cat /etc/os-release:
[2025-10-12 13:29:12] NAME="CentOS Linux"
[2025-10-12 13:29:12] VERSION="7 (Core)"
[2025-10-12 13:29:12] ID="centos"
[2025-10-12 13:29:12] ID_LIKE="rhel fedora"
[2025-10-12 13:29:12] VERSION_ID="7"
[2025-10-12 13:29:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:29:12] ANSI_COLOR="0;31"
[2025-10-12 13:29:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:29:12] HOME_URL="https://www.centos.org/"
[2025-10-12 13:29:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:29:12] 
[2025-10-12 13:29:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:29:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:29:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:29:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:29:12] 
[2025-10-12 13:29:12] 2025-10-12 17:28:33,204 | INFO     | ***************************************
[2025-10-12 13:29:12] 2025-10-12 17:28:33,707 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:29:12] 2025-10-12 17:28:33,727 | INFO     | sufficient remaining disk space (18588106752 B)
[2025-10-12 13:29:12] 2025-10-12 17:28:33,727 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:29:12] 2025-10-12 17:28:33,728 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:29:12] 2025-10-12 17:28:33,728 | INFO     | update_server=False
[2025-10-12 13:29:12] 2025-10-12 17:28:33,728 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:29:12] 2025-10-12 17:28:33,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:29:12] 2025-10-12 17:28:33,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:29:12] 2025-10-12 17:28:33,729 | INFO     | aborting loop
[2025-10-12 13:29:12] 2025-10-12 17:28:33,917 | INFO     | all payload control threads have been joined
[2025-10-12 13:29:12] 2025-10-12 17:28:34,144 | INFO     | all data control threads have been joined
[2025-10-12 13:29:12] 2025-10-12 17:28:34,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:29:12] 2025-10-12 17:28:34,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:29:12] 2025-10-12 17:28:34,734 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,734 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,735 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,758 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,758 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,759 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,761 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:34,810 | INFO     | all job control threads have been joined
[2025-10-12 13:29:12] 2025-10-12 17:28:34,922 | INFO     | [payload] control thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:35,149 | INFO     | [data] control thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:35,655 | INFO     | [job] validate thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:35,706 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:35,816 | INFO     | [job] control thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:35,867 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:36,280 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:38,686 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:28:44,522 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:29:12] 2025-10-12 17:28:45,526 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:29:12] 2025-10-12 17:29:02,726 | INFO     | 6459s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 13:29:12] 2025-10-12 17:29:03,840 | INFO     | PID=28051 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:29:12] 2025-10-12 17:29:03,841 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:29:12] 2025-10-12 17:29:03,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:29:12] 2025-10-12 17:29:03,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:29:12] 2025-10-12 17:29:06,193 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:29:12] 2025-10-12 17:29:07,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140387484284736)>', '<ExcThread(monitor, started 140386861291264)>']
[2025-10-12 13:29:12] 2025-10-12 17:29:07,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:29:12] 2025-10-12 17:29:07,857 | INFO     | [monitor] control thread has ended
[2025-10-12 13:29:12] 2025-10-12 17:29:12,221 | INFO     | all workflow threads have been joined
[2025-10-12 13:29:12] 2025-10-12 17:29:12,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:29:12] 2025-10-12 17:29:12,224 | INFO     | traces error code: 0
[2025-10-12 13:29:12] 2025-10-12 17:29:12,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:29:12] 2025-10-12 17:29:12,370 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:29:12] 2025-10-12 17:29:12,375 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:29:12] 2025-10-12 17:29:12,380 [wrapper] pilotpid: 28051
[2025-10-12 13:29:12] 2025-10-12 17:29:12,385 [wrapper] Pilot exit status: 0
[2025-10-12 13:29:12] 2025-10-12 17:29:12,402 [wrapper] pandaids: 6833426111
[2025-10-12 13:29:12] 2025-10-12 17:29:12,447 [wrapper] cleanup supervisor_pilot 18982 28052
[2025-10-12 13:29:12] 2025-10-12 17:29:12,452 [wrapper] Test setup, not cleaning
[2025-10-12 13:29:12] 2025-10-12 17:29:12,457 [wrapper] apfmon messages muted
[2025-10-12 13:29:12] 2025-10-12 17:29:12,462 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:29:12] 2025-10-12 17:29:12,467 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:29:12]  *** Error codes and diagnostics ***
[2025-10-12 13:29:12]     "exeErrorCode": 0,
[2025-10-12 13:29:12]     "exeErrorDiag": "",
[2025-10-12 13:29:12]     "pilotErrorCode": 0,
[2025-10-12 13:29:12]     "pilotErrorDiag": "",
[2025-10-12 13:29:12]  *** Listing of results directory ***
[2025-10-12 13:29:12] total 383632
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas    552446 Oct  7 04:57 pilot3.tar.gz
[2025-10-12 13:29:12] -rwx------ 1 boincer umatlas     36292 Oct  7 04:58 runpilot2-wrapper.sh
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas      5112 Oct  7 04:58 queuedata.json
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:29:12] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:40 run_atlas
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:40 job.xml
[2025-10-12 13:29:12] -rw-r--r-- 2 boincer umatlas 212650012 Oct 12 11:40 EVNT.46376901._004898.pool.root.1
[2025-10-12 13:29:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:40 start_atlas.sh
[2025-10-12 13:29:12] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:40 shared
[2025-10-12 13:29:12] -rw-r--r-- 2 boincer umatlas    565602 Oct 12 11:40 input.tar.gz
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:40 boinc_lockfile
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas      2521 Oct 12 11:40 pandaJob.out
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas    975528 Oct 12 11:40 agis_schedconf.cvmfs.json
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas   1560580 Oct 12 11:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:29:12] drwx------ 4 boincer umatlas      4096 Oct 12 11:40 pilot3
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 13:27 init_data.xml
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas 173763214 Oct 12 13:27 HITS.46376905._131614.pool.root.1
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas       530 Oct 12 13:28 boinc_task_state.xml
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas      1050 Oct 12 13:28 memory_monitor_summary.json
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas    357935 Oct 12 13:28 log.46376905._131614.job.log.tgz.1
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas        95 Oct 12 13:28 pilot_heartbeat.json
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas      7866 Oct 12 13:28 heartbeat.json
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:29 wrapper_checkpoint.txt
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:29 boinc_mmap_file
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas      4933 Oct 12 13:29 pilotlog.txt
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas    908608 Oct 12 13:29 log.46376905._131614.job.log.1
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas       357 Oct 12 13:29 output.list
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:29 runtime_log
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas   1290240 Oct 12 13:29 result.tar.gz
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 13:29 runtime_log.err
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas       658 Oct 12 13:29 irAODmIiIQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYaWNDmLRpOGn.diag
[2025-10-12 13:29:12] -rw-r--r-- 1 boincer umatlas     20872 Oct 12 13:29 stderr.txt
[2025-10-12 13:29:12] HITS file was successfully produced:
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas 173763214 Oct 12 13:27 shared/HITS.pool.root.1
[2025-10-12 13:29:12]  *** Contents of shared directory: ***
[2025-10-12 13:29:12] total 379196
[2025-10-12 13:29:12] -rw-r--r-- 2 boincer umatlas 212650012 Oct 12 11:40 ATLAS.root_0
[2025-10-12 13:29:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:40 start_atlas.sh
[2025-10-12 13:29:12] -rw-r--r-- 2 boincer umatlas    565602 Oct 12 11:40 input.tar.gz
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas 173763214 Oct 12 13:27 HITS.pool.root.1
[2025-10-12 13:29:12] -rw------- 1 boincer umatlas   1290240 Oct 12 13:29 result.tar.gz
13:29:14 (24288): run_atlas exited; CPU time 47831.358186
13:29:14 (24288): called boinc_finish(0)

</stderr_txt>
]]>

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