Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:44:16 (22229): wrapper (7.7.26015): starting
11:44:16 (22229): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:44:16] Arguments: --nthreads 8
[2025-10-12 11:44:16] Threads: 8
[2025-10-12 11:44:16] Checking for CVMFS
[2025-10-12 11:44:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:44:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:44:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:44:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:44:17] 2.11.2.0 3643 1280 64888 151625 1 57 9827640 18432001 1833 130560 0 2013108 99.996 42392 32434 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:44:17] CVMFS is ok
[2025-10-12 11:44:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:44:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:44:17] Further information can be found at the LHC@home message board.
[2025-10-12 11:44:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:44:17] Checking for apptainer binary...
[2025-10-12 11:44:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:44:17] Running /usr/bin/apptainer --version
[2025-10-12 11:44:17] apptainer version 1.3.2-1.el7
[2025-10-12 11:44:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:44:18] c-206-15.aglt2.org
[2025-10-12 11:44:18] apptainer works
[2025-10-12 11:44:18] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:44:18] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:44:18] Starting ATLAS job with PandaID=6840181813
[2025-10-12 11:44:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:45:52]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:45:52] 2025-10-12 18:44:51,317 | INFO     | chi2: 1.3877514093407208
[2025-10-12 14:45:52] 2025-10-12 18:44:51,317 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,318 | INFO     | sum of deviations: 7860669474.000003
[2025-10-12 14:45:52] 2025-10-12 18:44:51,318 | INFO     | mean x: 1760289109.5
[2025-10-12 14:45:52] 2025-10-12 18:44:51,318 | INFO     | mean y: 2487281.430232558
[2025-10-12 14:45:52] 2025-10-12 18:44:51,318 | INFO     | -- intersect: -8767408918.639494
[2025-10-12 14:45:52] 2025-10-12 18:44:51,318 | INFO     | intersect: -8767408918.639494
[2025-10-12 14:45:52] 2025-10-12 18:44:51,319 | INFO     | chi2: 1.3886238332250151
[2025-10-12 14:45:52] 2025-10-12 18:44:51,319 | INFO     | current chi2=1.3886238332250151 (change=-0.06286600600238468 %)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,319 | INFO     | right removable region: 171
[2025-10-12 14:45:52] 2025-10-12 18:44:51,319 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,320 | INFO     | sum of deviations: -16553942283.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,320 | INFO     | mean x: 1760289414.5
[2025-10-12 14:45:52] 2025-10-12 18:44:51,320 | INFO     | mean y: 2513574.034883721
[2025-10-12 14:45:52] 2025-10-12 18:44:51,320 | INFO     | -- intersect: 18471217945.6297
[2025-10-12 14:45:52] 2025-10-12 18:44:51,320 | INFO     | intersect: 18471217945.6297
[2025-10-12 14:45:52] 2025-10-12 18:44:51,321 | INFO     | chi2: 0.05655992731956721
[2025-10-12 14:45:52] 2025-10-12 18:44:51,321 | INFO     | current chi2=0.05655992731956721 (change=95.92434733347255 %)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,321 | INFO     | sum of square deviations: 1444149868.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,322 | INFO     | sum of deviations: -14920743472.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,322 | INFO     | mean x: 1760289567.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,322 | INFO     | mean y: 2511647.0538922157
[2025-10-12 14:45:52] 2025-10-12 18:44:51,322 | INFO     | -- intersect: 18189563869.008575
[2025-10-12 14:45:52] 2025-10-12 18:44:51,322 | INFO     | intersect: 18189563869.008575
[2025-10-12 14:45:52] 2025-10-12 18:44:51,322 | INFO     | chi2: 0.041101041413337876
[2025-10-12 14:45:52] 2025-10-12 18:44:51,323 | INFO     | current chi2=0.041101041413337876 (change=27.331870175302097 %)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,323 | INFO     | sum of square deviations: 1318277740.5
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | sum of deviations: -9844344944.000002
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | mean x: 1760289719.5
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | mean y: 2505502.2716049384
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | -- intersect: 13147610412.836546
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | intersect: 13147610412.836546
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | chi2: 0.02111687544863896
[2025-10-12 14:45:52] 2025-10-12 18:44:51,324 | INFO     | current chi2=0.02111687544863896 (change=48.622042842480795 %)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,325 | INFO     | sum of square deviations: 1199940638.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,325 | INFO     | sum of deviations: -7158979154.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,325 | INFO     | mean x: 1760289872.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,325 | INFO     | mean y: 2502046.0955414013
[2025-10-12 14:45:52] 2025-10-12 18:44:51,326 | INFO     | -- intersect: 10504586982.271633
[2025-10-12 14:45:52] 2025-10-12 18:44:51,326 | INFO     | intersect: 10504586982.271633
[2025-10-12 14:45:52] 2025-10-12 18:44:51,326 | INFO     | chi2: 0.016342622331382693
[2025-10-12 14:45:52] 2025-10-12 18:44:51,326 | INFO     | current chi2=0.016342622331382693 (change=22.60870993376049 %)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,326 | INFO     | left removable region: 40
[2025-10-12 14:45:52] 2025-10-12 18:44:51,326 | INFO     | sum of square deviations: 697054930.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,327 | INFO     | sum of deviations: -442603129.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,327 | INFO     | mean x: 1760290299.0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,327 | INFO     | mean y: 2491607.007633588
[2025-10-12 14:45:52] 2025-10-12 18:44:51,327 | INFO     | -- intersect: 1120208390.5124078
[2025-10-12 14:45:52] 2025-10-12 18:44:51,327 | INFO     | intersect: 1120208390.5124078
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | chi2: 0.004965452392357594
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | -- intersect: 1120208390.5124078
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | current memory leak: -0.63 B/s (using 131 data points, chi2=0.00)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | could have reported an average CPU frequency of 2577 MHz (9 samples)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | ..............................
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | . Timing measurements:
[2025-10-12 14:45:52] 2025-10-12 18:44:51,328 | INFO     | . get job = 0 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | . initial setup = 2 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | . payload setup = 5 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | . stage-in = 0 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | . payload execution = 10790 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | . stage-out = 2 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | . log creation = 0 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,329 | INFO     | ..............................
[2025-10-12 14:45:52] 2025-10-12 18:44:51,913 | INFO     | 
[2025-10-12 14:45:52] 2025-10-12 18:44:51,913 | INFO     | job summary report
[2025-10-12 14:45:52] 2025-10-12 18:44:51,913 | INFO     | --------------------------------------------------
[2025-10-12 14:45:52] 2025-10-12 18:44:51,913 | INFO     | PanDA job id: 6840181813
[2025-10-12 14:45:52] 2025-10-12 18:44:51,913 | INFO     | task id: 46676269
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | errors: (none)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | pilot state: finished 
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | transexitcode: 0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | exeerrorcode: 0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | exeerrordiag: 
[2025-10-12 14:45:52] 2025-10-12 18:44:51,914 | INFO     | exitcode: 0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,915 | INFO     | exitmsg: OK
[2025-10-12 14:45:52] 2025-10-12 18:44:51,915 | INFO     | cpuconsumptiontime: 81026 s
[2025-10-12 14:45:52] 2025-10-12 18:44:51,915 | INFO     | nevents: 400
[2025-10-12 14:45:52] 2025-10-12 18:44:51,915 | INFO     | neventsw: 0
[2025-10-12 14:45:52] 2025-10-12 18:44:51,915 | INFO     | pid: 32312
[2025-10-12 14:45:52] 2025-10-12 18:44:51,915 | INFO     | pgrp: 32312
[2025-10-12 14:45:52] 2025-10-12 18:44:51,916 | INFO     | corecount: 8
[2025-10-12 14:45:52] 2025-10-12 18:44:51,916 | INFO     | event service: False
[2025-10-12 14:45:52] 2025-10-12 18:44:51,916 | INFO     | sizes: {0: 2348684, 1: 2348883, 4: 2349145, 12: 2349173, 10799: 2378246, 10802: 2387428, 10808: 2387630}
[2025-10-12 14:45:52] 2025-10-12 18:44:51,916 | INFO     | --------------------------------------------------
[2025-10-12 14:45:52] 2025-10-12 18:44:51,916 | INFO     | 
[2025-10-12 14:45:52] 2025-10-12 18:44:51,917 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,937 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,937 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:45:52] 2025-10-12 18:44:51,937 | INFO     | job 6840181813 has completed (purged errors)
[2025-10-12 14:45:52] 2025-10-12 18:44:51,937 | INFO     | overall cleanup function is called
[2025-10-12 14:45:52] 2025-10-12 18:44:52,944 | INFO     | --- collectZombieJob: --- 10, [32312]
[2025-10-12 14:45:52] 2025-10-12 18:44:52,944 | INFO     | zombie collector waiting for pid 32312
[2025-10-12 14:45:52] 2025-10-12 18:44:52,944 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:45:52] 2025-10-12 18:44:52,945 | INFO     | collected zombie processes
[2025-10-12 14:45:52] 2025-10-12 18:44:52,945 | INFO     | will attempt to kill all subprocesses of pid=32312
[2025-10-12 14:45:52] 2025-10-12 18:44:53,098 | INFO     | process IDs to be killed: [32312] (in reverse order)
[2025-10-12 14:45:52] 2025-10-12 18:44:53,185 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:45:52] 2025-10-12 18:44:53,185 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:45:52] 2025-10-12 18:44:53,190 | INFO     | did not find any defunct processes belonging to 32312
[2025-10-12 14:45:52] 2025-10-12 18:44:53,195 | INFO     | did not find any defunct processes belonging to 32312
[2025-10-12 14:45:52] 2025-10-12 18:44:53,195 | INFO     | ready for new job
[2025-10-12 14:45:52] 2025-10-12 18:44:53,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:45:52] 2025-10-12 18:44:53,198 | INFO     | ***************************************
[2025-10-12 14:45:52] 2025-10-12 18:44:53,198 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:45:52] 2025-10-12 18:44:53,198 | INFO     | ***************************************
[2025-10-12 14:45:52] 2025-10-12 18:44:53,198 | INFO     | 
[2025-10-12 14:45:52] 2025-10-12 18:44:53,199 | INFO     | architecture information:
[2025-10-12 14:45:52] 2025-10-12 18:44:53,200 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:45:52] 2025-10-12 18:44:53,213 | INFO     | cat /etc/os-release:
[2025-10-12 14:45:52] NAME="CentOS Linux"
[2025-10-12 14:45:52] VERSION="7 (Core)"
[2025-10-12 14:45:52] ID="centos"
[2025-10-12 14:45:52] ID_LIKE="rhel fedora"
[2025-10-12 14:45:52] VERSION_ID="7"
[2025-10-12 14:45:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:45:52] ANSI_COLOR="0;31"
[2025-10-12 14:45:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:45:52] HOME_URL="https://www.centos.org/"
[2025-10-12 14:45:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:45:52] 
[2025-10-12 14:45:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:45:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:45:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:45:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:45:52] 
[2025-10-12 14:45:52] 2025-10-12 18:44:53,213 | INFO     | ***************************************
[2025-10-12 14:45:52] 2025-10-12 18:44:53,716 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 14:45:52] 2025-10-12 18:44:53,737 | INFO     | sufficient remaining disk space (27953987584 B)
[2025-10-12 14:45:52] 2025-10-12 18:44:53,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:45:52] 2025-10-12 18:44:53,737 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:45:52] 2025-10-12 18:44:53,737 | INFO     | update_server=False
[2025-10-12 14:45:52] 2025-10-12 18:44:53,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:45:52] 2025-10-12 18:44:53,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:45:52] 2025-10-12 18:44:53,956 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:45:52] 2025-10-12 18:44:53,956 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:45:52] 2025-10-12 18:44:53,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:45:52] 2025-10-12 18:44:53,956 | INFO     | will abort loop
[2025-10-12 14:45:52] 2025-10-12 18:44:53,998 | INFO     | all data control threads have been joined
[2025-10-12 14:45:52] 2025-10-12 18:44:54,183 | INFO     | all payload control threads have been joined
[2025-10-12 14:45:52] 2025-10-12 18:44:54,746 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:54,759 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:54,962 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,003 | INFO     | [data] control thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,186 | INFO     | [payload] control thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,266 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,316 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,317 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,421 | INFO     | all job control threads have been joined
[2025-10-12 14:45:52] 2025-10-12 18:44:55,421 | INFO     | [job] validate thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,746 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:55,976 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:56,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:45:52] 2025-10-12 18:44:56,140 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:56,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:56,429 | INFO     | [job] control thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:44:56,487 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:45:52] 2025-10-12 18:44:57,492 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:45:00,071 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:45:52] 2025-10-12 18:45:23,473 | INFO     | PID=25914 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:45:52] 2025-10-12 18:45:23,473 | INFO     | .. there are 3 such processes running
[2025-10-12 14:45:52] 2025-10-12 18:45:23,474 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:45:52] 2025-10-12 18:45:23,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:45:52] 2025-10-12 18:45:23,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:45:52] 2025-10-12 18:45:46,274 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:45:52] 2025-10-12 18:45:47,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140711490615104)>', '<ExcThread(monitor, started 140710779025152)>']
[2025-10-12 14:45:52] 2025-10-12 18:45:47,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:45:52] 2025-10-12 18:45:47,599 | INFO     | [monitor] control thread has ended
[2025-10-12 14:45:52] 2025-10-12 18:45:52,582 | INFO     | all workflow threads have been joined
[2025-10-12 14:45:52] 2025-10-12 18:45:52,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:45:52] 2025-10-12 18:45:52,583 | INFO     | traces error code: 0
[2025-10-12 14:45:52] 2025-10-12 18:45:52,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:45:52] 2025-10-12 18:45:52,687 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:45:52] 2025-10-12 18:45:52,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:45:52] 2025-10-12 18:45:52,692 [wrapper] pilotpid: 25914
[2025-10-12 14:45:52] 2025-10-12 18:45:52,694 [wrapper] Pilot exit status: 0
[2025-10-12 14:45:52] 2025-10-12 18:45:52,703 [wrapper] pandaids: 6840181813
[2025-10-12 14:45:52] 2025-10-12 18:45:52,733 [wrapper] cleanup supervisor_pilot 31374 25915
[2025-10-12 14:45:52] 2025-10-12 18:45:52,736 [wrapper] Test setup, not cleaning
[2025-10-12 14:45:52] 2025-10-12 18:45:52,738 [wrapper] apfmon messages muted
[2025-10-12 14:45:52] 2025-10-12 18:45:52,740 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:45:52] 2025-10-12 18:45:52,742 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:45:52]  *** Error codes and diagnostics ***
[2025-10-12 14:45:52]     "exeErrorCode": 0,
[2025-10-12 14:45:52]     "exeErrorDiag": "",
[2025-10-12 14:45:52]     "pilotErrorCode": 0,
[2025-10-12 14:45:52]     "pilotErrorDiag": "",
[2025-10-12 14:45:52]  *** Listing of results directory ***
[2025-10-12 14:45:52] total 409136
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:55 pilot3.tar.gz
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 10:24 queuedata.json
[2025-10-12 14:45:52] -rwx------ 1 boincer umatlas     36292 Oct 12 10:25 runpilot2-wrapper.sh
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:45:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:44 run_atlas
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:44 job.xml
[2025-10-12 14:45:52] -rw-r--r-- 2 boincer umatlas 219525561 Oct 12 11:44 EVNT.46676267._004236.pool.root.1
[2025-10-12 14:45:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:44 start_atlas.sh
[2025-10-12 14:45:52] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:44 shared
[2025-10-12 14:45:52] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 11:44 input.tar.gz
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:44 boinc_lockfile
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 11:44 pandaJob.out
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas    975528 Oct 12 11:44 agis_schedconf.cvmfs.json
[2025-10-12 14:45:52] drwx------ 5 boincer umatlas      4096 Oct 12 11:44 pilot3
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 14:36 init_data.xml
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas 191673120 Oct 12 14:44 HITS.46676269._080688.pool.root.1
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas       531 Oct 12 14:44 boinc_task_state.xml
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas      1054 Oct 12 14:44 memory_monitor_summary.json
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas   1560580 Oct 12 14:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas    403182 Oct 12 14:44 log.46676269._080688.job.log.tgz.1
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas      7856 Oct 12 14:44 heartbeat.json
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas        95 Oct 12 14:45 pilot_heartbeat.json
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas        28 Oct 12 14:45 wrapper_checkpoint.txt
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:45 boinc_mmap_file
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas      5007 Oct 12 14:45 pilotlog.txt
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas   1519063 Oct 12 14:45 log.46676269._080688.job.log.1
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas       357 Oct 12 14:45 output.list
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:45 runtime_log
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas   1945600 Oct 12 14:45 result.tar.gz
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas       662 Oct 12 14:45 SmrMDmlBCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHFkNDml1Hwjn.diag
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 14:45 runtime_log.err
[2025-10-12 14:45:52] -rw-r--r-- 1 boincer umatlas     20905 Oct 12 14:45 stderr.txt
[2025-10-12 14:45:52] HITS file was successfully produced:
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas 191673120 Oct 12 14:44 shared/HITS.pool.root.1
[2025-10-12 14:45:52]  *** Contents of shared directory: ***
[2025-10-12 14:45:52] total 404052
[2025-10-12 14:45:52] -rw-r--r-- 2 boincer umatlas 219525561 Oct 12 11:44 ATLAS.root_0
[2025-10-12 14:45:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:44 start_atlas.sh
[2025-10-12 14:45:52] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 11:44 input.tar.gz
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas 191673120 Oct 12 14:44 HITS.pool.root.1
[2025-10-12 14:45:52] -rw------- 1 boincer umatlas   1945600 Oct 12 14:45 result.tar.gz
14:45:54 (22229): run_atlas exited; CPU time 81142.406267
14:45:54 (22229): called boinc_finish(0)

</stderr_txt>
]]>

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