Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
00:42:10 (2112774): wrapper (7.7.26015): starting
00:42:10 (2112774): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 00:42:10] Arguments: --nthreads 4
[2025-10-13 00:42:10] Threads: 4
[2025-10-13 00:42:10] Checking for CVMFS
[2025-10-13 00:42:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:42:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:42:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:42:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:42:11] 2.11.3.0 4671 10650 99592 151650 3 57 2360941 4194304 0 130560 0 4868762 99.984 432673 761 http://s1unl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.59.5:3128 1
[2025-10-13 00:42:11] CVMFS is ok
[2025-10-13 00:42:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:42:11] Checking for apptainer binary...
[2025-10-13 00:42:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:42:11] Running /usr/bin/apptainer --version
[2025-10-13 00:42:11] apptainer version 1.4.2-1.fc42
[2025-10-13 00:42:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:42:11] R7OwensSE
[2025-10-13 00:42:11] apptainer works
[2025-10-13 00:42:11] Set ATHENA_PROC_NUMBER=4
[2025-10-13 00:42:11] Set ATHENA_CORE_NUMBER=4
[2025-10-13 00:42:11] Starting ATLAS job with PandaID=6840181837
[2025-10-13 00:42:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:45:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:45:40] 2025-10-13 07:44:47,486 | INFO     | time since job start (7345s) is within the limit (172800.0s)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,024 | INFO     | monitor loop #561: job 0:6840181837 is in state 'finished'
[2025-10-13 02:45:40] 2025-10-13 07:44:49,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,491 | INFO     | time since job start (7347s) is within the limit (172800.0s)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,676 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 02:45:40] 2025-10-13 07:44:49,678 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3215.951125
[2025-10-13 02:45:40] 2025-10-13 07:44:49,681 | INFO     | using path: /data/boinc/slots/1/PanDA_Pilot-6840181837/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,681 | INFO     | extracted standard info from prmon json
[2025-10-13 02:45:40] 2025-10-13 07:44:49,681 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 02:45:40] 2025-10-13 07:44:49,681 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 02:45:40] 2025-10-13 07:44:49,682 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 02:45:40] 2025-10-13 07:44:49,682 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 02:45:40] 2025-10-13 07:44:49,683 | INFO     | fitting pss+swap vs Time
[2025-10-13 02:45:40] 2025-10-13 07:44:49,683 | INFO     | sum of square deviations: 535786790.0
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | sum of deviations: -28786474589.499996
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | mean x: 1760337795.5
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | mean y: 2516164.725
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | -- intersect: 94581031657.98155
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | intersect: 94581031657.98155
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | chi2: 1.4106697121690335
[2025-10-13 02:45:40] 2025-10-13 07:44:49,684 | INFO     | sum of square deviations: 471562330.0
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | sum of deviations: -25950141027.999992
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | mean x: 1760337643.0
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | mean y: 2522903.460869565
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | -- intersect: 96874149805.35336
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | intersect: 96874149805.35336
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | chi2: 1.4065580576818464
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | current chi2=1.4065580576818464 (change=0.29146826161490663 %)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | right removable region: 114
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | sum of square deviations: 471562330.0
[2025-10-13 02:45:40] 2025-10-13 07:44:49,685 | INFO     | sum of deviations: -40217338369.0
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | mean x: 1760337948.0
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | mean y: 2542433.791304348
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | -- intersect: 150133505817.7985
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | intersect: 150133505817.7985
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | chi2: 0.20908105533424892
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | current chi2=0.20908105533424892 (change=85.17859612844684 %)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | sum of square deviations: 412686807.5
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | sum of deviations: -36804524795.5
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | mean x: 1760338100.5
[2025-10-13 02:45:40] 2025-10-13 07:44:49,686 | INFO     | mean y: 2533582.6818181816
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | -- intersect: 156994242769.595
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | intersect: 156994242769.595
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | chi2: 0.20312933264675412
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | current chi2=0.20312933264675412 (change=2.846610219170761 %)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | left removable region: 20
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | sum of square deviations: 257521107.5
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | sum of deviations: -26310811153.000008
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | mean x: 1760338222.5
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | mean y: 2519934.638297872
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | -- intersect: 179855453106.74814
[2025-10-13 02:45:40] 2025-10-13 07:44:49,687 | INFO     | intersect: 179855453106.74814
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | chi2: 0.18264963759238217
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | -- intersect: 179855453106.74814
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | current memory leak: -102.17 B/s (using 94 data points, chi2=0.18)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | could have reported an average CPU frequency of 3307 MHz (8 samples)
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | ..............................
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . Timing measurements:
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . get job = 0 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . initial setup = 3 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . payload setup = 4 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . stage-in = 0 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . payload execution = 7314 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,688 | INFO     | . stage-out = 0 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,689 | INFO     | . log creation = 0 s
[2025-10-13 02:45:40] 2025-10-13 07:44:49,689 | INFO     | ..............................
[2025-10-13 02:45:40] 2025-10-13 07:44:50,094 | INFO     | 
[2025-10-13 02:45:40] 2025-10-13 07:44:50,094 | INFO     | job summary report
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | --------------------------------------------------
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | PanDA job id: 6840181837
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | task id: 46676269
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | errors: (none)
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | pilot state: finished 
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | transexitcode: 0
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | exeerrorcode: 0
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | exeerrordiag: 
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | exitcode: 0
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | exitmsg: OK
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | cpuconsumptiontime: 28272 s
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | nevents: 400
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | neventsw: 0
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | pid: 2123160
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | pgrp: 2123160
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | corecount: 4
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | event service: False
[2025-10-13 02:45:40] 2025-10-13 07:44:50,095 | INFO     | sizes: {0: 2348852, 4: 2349114, 11: 2349142, 7322: 2376638, 7323: 2376637, 7324: 2385685, 7327: 2385869, 7333: 2386063}
[2025-10-13 02:45:40] 2025-10-13 07:44:50,096 | INFO     | --------------------------------------------------
[2025-10-13 02:45:40] 2025-10-13 07:44:50,096 | INFO     | 
[2025-10-13 02:45:40] 2025-10-13 07:44:50,096 | INFO     | executing command: ls -lF /data/boinc/slots/1
[2025-10-13 02:45:40] 2025-10-13 07:44:50,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,117 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,117 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:45:40] 2025-10-13 07:44:50,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:45:40] 2025-10-13 07:44:50,119 | INFO     | job 6840181837 has completed (purged errors)
[2025-10-13 02:45:40] 2025-10-13 07:44:50,119 | INFO     | overall cleanup function is called
[2025-10-13 02:45:40] 2025-10-13 07:44:51,126 | INFO     | --- collectZombieJob: --- 10, [2123160]
[2025-10-13 02:45:40] 2025-10-13 07:44:51,126 | INFO     | zombie collector waiting for pid 2123160
[2025-10-13 02:45:40] 2025-10-13 07:44:51,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:45:40] 2025-10-13 07:44:51,127 | INFO     | collected zombie processes
[2025-10-13 02:45:40] 2025-10-13 07:44:51,127 | INFO     | will attempt to kill all subprocesses of pid=2123160
[2025-10-13 02:45:40] 2025-10-13 07:44:51,211 | INFO     | process IDs to be killed: [2123160] (in reverse order)
[2025-10-13 02:45:40] 2025-10-13 07:44:51,261 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:45:40] 2025-10-13 07:44:51,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:45:40] 2025-10-13 07:44:51,265 | INFO     | did not find any defunct processes belonging to 2123160
[2025-10-13 02:45:40] 2025-10-13 07:44:51,268 | INFO     | did not find any defunct processes belonging to 2123160
[2025-10-13 02:45:40] 2025-10-13 07:44:51,269 | INFO     | ready for new job
[2025-10-13 02:45:40] 2025-10-13 07:44:51,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:45:40] 2025-10-13 07:44:51,270 | INFO     | ***************************************
[2025-10-13 02:45:40] 2025-10-13 07:44:51,270 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:45:40] 2025-10-13 07:44:51,270 | INFO     | ***************************************
[2025-10-13 02:45:40] 2025-10-13 07:44:51,270 | INFO     | 
[2025-10-13 02:45:40] 2025-10-13 07:44:51,271 | INFO     | architecture information:
[2025-10-13 02:45:40] 2025-10-13 07:44:51,272 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:45:40] 2025-10-13 07:44:51,288 | INFO     | cat /etc/os-release:
[2025-10-13 02:45:40] NAME="CentOS Linux"
[2025-10-13 02:45:40] VERSION="7 (Core)"
[2025-10-13 02:45:40] ID="centos"
[2025-10-13 02:45:40] ID_LIKE="rhel fedora"
[2025-10-13 02:45:40] VERSION_ID="7"
[2025-10-13 02:45:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:45:40] ANSI_COLOR="0;31"
[2025-10-13 02:45:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:45:40] HOME_URL="https://www.centos.org/"
[2025-10-13 02:45:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:45:40] 
[2025-10-13 02:45:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:45:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:45:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:45:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:45:40] 
[2025-10-13 02:45:40] 2025-10-13 07:44:51,288 | INFO     | ***************************************
[2025-10-13 02:45:40] 2025-10-13 07:44:51,791 | INFO     | executing command: df -mP /data/boinc/slots/1
[2025-10-13 02:45:40] 2025-10-13 07:44:51,811 | INFO     | sufficient remaining disk space (408511578112 B)
[2025-10-13 02:45:40] 2025-10-13 07:44:51,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:45:40] 2025-10-13 07:44:51,811 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:45:40] 2025-10-13 07:44:51,811 | INFO     | update_server=False
[2025-10-13 02:45:40] 2025-10-13 07:44:51,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:45:40] 2025-10-13 07:44:51,812 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:45:40] 2025-10-13 07:44:52,141 | INFO     | all payload control threads have been joined
[2025-10-13 02:45:40] 2025-10-13 07:44:52,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:45:40] 2025-10-13 07:44:52,533 | INFO     | aborting loop
[2025-10-13 02:45:40] 2025-10-13 07:44:52,730 | INFO     | all job control threads have been joined
[2025-10-13 02:45:40] 2025-10-13 07:44:52,776 | INFO     | all data control threads have been joined
[2025-10-13 02:45:40] 2025-10-13 07:44:52,816 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:52,926 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,146 | INFO     | [payload] control thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,255 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,378 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,537 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,681 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,734 | INFO     | [job] control thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,782 | INFO     | [data] control thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,816 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,884 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:53,972 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:54,105 | INFO     | [job] validate thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:54,312 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:54,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:45:40] 2025-10-13 07:44:54,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:45:40] 2025-10-13 07:44:55,767 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:44:58,647 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:45:40] 2025-10-13 07:45:22,675 | INFO     | PID=2116613 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:45:40] 2025-10-13 07:45:22,676 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:45:40] 2025-10-13 07:45:22,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:45:40] 2025-10-13 07:45:22,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:45:40] 2025-10-13 07:45:33,200 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:45:40] 2025-10-13 07:45:34,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827423242048)>', '<ExcThread(monitor, started 139826921715456)>']
[2025-10-13 02:45:40] 2025-10-13 07:45:35,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:45:40] 2025-10-13 07:45:35,735 | INFO     | [monitor] control thread has ended
[2025-10-13 02:45:40] 2025-10-13 07:45:39,828 | INFO     | all workflow threads have been joined
[2025-10-13 02:45:40] 2025-10-13 07:45:39,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:45:40] 2025-10-13 07:45:39,829 | INFO     | traces error code: 0
[2025-10-13 02:45:40] 2025-10-13 07:45:39,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:45:40] 2025-10-13 07:45:39,960 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:45:40] 2025-10-13 07:45:39,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:45:40] 2025-10-13 07:45:39,964 [wrapper] pilotpid: 2116613
[2025-10-13 02:45:40] 2025-10-13 07:45:39,967 [wrapper] Pilot exit status: 0
[2025-10-13 02:45:40] 2025-10-13 07:45:39,977 [wrapper] pandaids: 6840181837
[2025-10-13 02:45:40] 2025-10-13 07:45:40,011 [wrapper] cleanup supervisor_pilot 2139822 2116614
[2025-10-13 02:45:40] 2025-10-13 07:45:40,014 [wrapper] Test setup, not cleaning
[2025-10-13 02:45:40] 2025-10-13 07:45:40,017 [wrapper] apfmon messages muted
[2025-10-13 02:45:40] 2025-10-13 07:45:40,021 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:45:40] 2025-10-13 07:45:40,025 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:45:40]  *** Error codes and diagnostics ***
[2025-10-13 02:45:40]     "exeErrorCode": 0,
[2025-10-13 02:45:40]     "exeErrorDiag": "",
[2025-10-13 02:45:40]     "pilotErrorCode": 0,
[2025-10-13 02:45:40]     "pilotErrorDiag": "",
[2025-10-13 02:45:40]  *** Listing of results directory ***
[2025-10-13 02:45:40] total 412744
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:55 pilot3.tar.gz
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:24 queuedata.json
[2025-10-13 02:45:40] -rwx------ 1 boinc boinc     36292 Oct 12 09:25 runpilot2-wrapper.sh
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:45:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:42 run_atlas
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:42 job.xml
[2025-10-13 02:45:40] -rw-r--r-- 2 boinc boinc 222134972 Oct 13 00:42 EVNT.46676267._004237.pool.root.1
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc      9534 Oct 13 00:42 init_data.xml
[2025-10-13 02:45:40] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:42 shared
[2025-10-13 02:45:40] -rw-r--r-- 2 boinc boinc    569679 Oct 13 00:42 input.tar.gz
[2025-10-13 02:45:40] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:42 start_atlas.sh
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:42 boinc_lockfile
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc      2549 Oct 13 00:42 pandaJob.out
[2025-10-13 02:45:40] -rw------- 1 boinc boinc    973230 Oct 13 00:42 agis_schedconf.cvmfs.json
[2025-10-13 02:45:40] -rw------- 1 boinc boinc   1560580 Oct 13 00:42 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:45:40] drwx------ 5 boinc boinc      4096 Oct 13 00:42 pilot3
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:44 boinc_task_state.xml
[2025-10-13 02:45:40] -rw------- 1 boinc boinc 193933304 Oct 13 02:44 HITS.46676269._080712.pool.root.1
[2025-10-13 02:45:40] -rw------- 1 boinc boinc      1015 Oct 13 02:44 memory_monitor_summary.json
[2025-10-13 02:45:40] -rw------- 1 boinc boinc    289869 Oct 13 02:44 log.46676269._080712.job.log.tgz.1
[2025-10-13 02:45:40] -rw------- 1 boinc boinc      7745 Oct 13 02:44 heartbeat.json
[2025-10-13 02:45:40] -rw------- 1 boinc boinc        95 Oct 13 02:45 pilot_heartbeat.json
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:45 boinc_mmap_file
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:45 wrapper_checkpoint.txt
[2025-10-13 02:45:40] -rw------- 1 boinc boinc      4746 Oct 13 02:45 pilotlog.txt
[2025-10-13 02:45:40] -rw------- 1 boinc boinc   1047572 Oct 13 02:45 log.46676269._080712.job.log.1
[2025-10-13 02:45:40] -rw------- 1 boinc boinc       357 Oct 13 02:45 output.list
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:45 runtime_log
[2025-10-13 02:45:40] -rw------- 1 boinc boinc   1361920 Oct 13 02:45 result.tar.gz
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc      8622 Oct 13 02:45 runtime_log.err
[2025-10-13 02:45:40] -rw------- 1 boinc boinc       642 Oct 13 02:45 OZ0MDmlBCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMFkNDmmQ6J6n.diag
[2025-10-13 02:45:40] -rw-r--r-- 1 boinc boinc     20802 Oct 13 02:45 stderr.txt
[2025-10-13 02:45:40] HITS file was successfully produced:
[2025-10-13 02:45:40] -rw------- 1 boinc boinc 193933304 Oct 13 02:44 shared/HITS.pool.root.1
[2025-10-13 02:45:40]  *** Contents of shared directory: ***
[2025-10-13 02:45:40] total 408232
[2025-10-13 02:45:40] -rw-r--r-- 2 boinc boinc 222134972 Oct 13 00:42 ATLAS.root_0
[2025-10-13 02:45:40] -rw-r--r-- 2 boinc boinc    569679 Oct 13 00:42 input.tar.gz
[2025-10-13 02:45:40] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:42 start_atlas.sh
[2025-10-13 02:45:40] -rw------- 1 boinc boinc 193933304 Oct 13 02:44 HITS.pool.root.1
[2025-10-13 02:45:40] -rw------- 1 boinc boinc   1361920 Oct 13 02:45 result.tar.gz
02:45:41 (2112774): run_atlas exited; CPU time 28331.530515
02:45:41 (2112774): called boinc_finish(0)

</stderr_txt>
]]>

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