Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:21:48 (1206168): wrapper (7.7.26015): starting
03:21:48 (1206168): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 03:21:48] Arguments: --nthreads 4
[2025-10-13 03:21:48] Threads: 4
[2025-10-13 03:21:48] Checking for CVMFS
[2025-10-13 03:21:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:21:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:21:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:21:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:21:48] 2.9.2.0 3100 3459 98012 151643 2 56 31135212 36864001 0 130560 0 3142877 99.992 121445 709 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 03:21:48] CVMFS is ok
[2025-10-13 03:21:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:21:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:21:48] Further information can be found at the LHC@home message board.
[2025-10-13 03:21:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:21:48] Checking for apptainer binary...
[2025-10-13 03:21:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:21:48] Running /usr/bin/apptainer --version
[2025-10-13 03:21:48] apptainer version 1.4.1-1.1
[2025-10-13 03:21:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:21:48] thA338
[2025-10-13 03:21:48] apptainer works
[2025-10-13 03:21:48] Set ATHENA_PROC_NUMBER=4
[2025-10-13 03:21:48] Set ATHENA_CORE_NUMBER=4
[2025-10-13 03:21:48] Starting ATLAS job with PandaID=6840181791
[2025-10-13 03:21:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:33:08]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | job 6840181791 has completed (purged errors)
[2025-10-13 04:33:08] 2025-10-13 02:32:27,446 | INFO     | overall cleanup function is called
[2025-10-13 04:33:08] 2025-10-13 02:32:28,452 | INFO     | --- collectZombieJob: --- 10, [1216518]
[2025-10-13 04:33:08] 2025-10-13 02:32:28,453 | INFO     | zombie collector waiting for pid 1216518
[2025-10-13 04:33:08] 2025-10-13 02:32:28,453 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:33:08] 2025-10-13 02:32:28,453 | INFO     | collected zombie processes
[2025-10-13 04:33:08] 2025-10-13 02:32:28,453 | INFO     | will attempt to kill all subprocesses of pid=1216518
[2025-10-13 04:33:08] 2025-10-13 02:32:28,498 | INFO     | process IDs to be killed: [1216518] (in reverse order)
[2025-10-13 04:33:08] 2025-10-13 02:32:28,529 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:33:08] 2025-10-13 02:32:28,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:33:08] 2025-10-13 02:32:28,531 | INFO     | did not find any defunct processes belonging to 1216518
[2025-10-13 04:33:08] 2025-10-13 02:32:28,533 | INFO     | did not find any defunct processes belonging to 1216518
[2025-10-13 04:33:08] 2025-10-13 02:32:28,533 | INFO     | ready for new job
[2025-10-13 04:33:08] 2025-10-13 02:32:28,533 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:33:08] 2025-10-13 02:32:28,534 | INFO     | ***************************************
[2025-10-13 04:33:08] 2025-10-13 02:32:28,534 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:33:08] 2025-10-13 02:32:28,534 | INFO     | ***************************************
[2025-10-13 04:33:08] 2025-10-13 02:32:28,534 | INFO     | 
[2025-10-13 04:33:08] 2025-10-13 02:32:28,534 | INFO     | architecture information:
[2025-10-13 04:33:08] 2025-10-13 02:32:28,534 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:33:08] 2025-10-13 02:32:28,548 | INFO     | cat /etc/os-release:
[2025-10-13 04:33:08] NAME="CentOS Linux"
[2025-10-13 04:33:08] VERSION="7 (Core)"
[2025-10-13 04:33:08] ID="centos"
[2025-10-13 04:33:08] ID_LIKE="rhel fedora"
[2025-10-13 04:33:08] VERSION_ID="7"
[2025-10-13 04:33:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:33:08] ANSI_COLOR="0;31"
[2025-10-13 04:33:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:33:08] HOME_URL="https://www.centos.org/"
[2025-10-13 04:33:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:33:08] 
[2025-10-13 04:33:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:33:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:33:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:33:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:33:08] 
[2025-10-13 04:33:08] 2025-10-13 02:32:28,548 | INFO     | ***************************************
[2025-10-13 04:33:08] 2025-10-13 02:32:29,051 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 04:33:08] 2025-10-13 02:32:29,068 | INFO     | sufficient remaining disk space (228105125888 B)
[2025-10-13 04:33:08] 2025-10-13 02:32:29,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:33:08] 2025-10-13 02:32:29,068 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:33:08] 2025-10-13 02:32:29,068 | INFO     | update_server=False
[2025-10-13 04:33:08] 2025-10-13 02:32:29,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:33:08] 2025-10-13 02:32:29,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:33:08] 2025-10-13 02:32:30,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:33:08] 2025-10-13 02:32:30,063 | INFO     | aborting loop
[2025-10-13 04:33:08] 2025-10-13 02:32:30,074 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:30,093 | INFO     | all payload control threads have been joined
[2025-10-13 04:33:08] 2025-10-13 02:32:30,100 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:30,162 | INFO     | all data control threads have been joined
[2025-10-13 04:33:08] 2025-10-13 02:32:30,194 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:30,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:33:08] 2025-10-13 02:32:30,363 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:30,396 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:30,705 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:30,714 | INFO     | all job control threads have been joined
[2025-10-13 04:33:08] 2025-10-13 02:32:30,902 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:31,069 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:31,099 | INFO     | [payload] control thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:31,168 | INFO     | [data] control thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:31,340 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:31,512 | INFO     | [job] validate thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:31,719 | INFO     | [job] control thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:32,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:33:08] 2025-10-13 02:32:32,289 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:33,018 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:33,075 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:33:08] 2025-10-13 02:32:59,370 | INFO     | PID=1209965 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 04:33:08] 2025-10-13 02:32:59,370 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:33:08] 2025-10-13 02:32:59,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:33:08] 2025-10-13 02:32:59,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:33:08] 2025-10-13 02:33:01,127 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:33:08] 2025-10-13 02:33:03,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183789889344)>', '<ExcThread(monitor, started 140182992955136)>']
[2025-10-13 04:33:08] 2025-10-13 02:33:03,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:33:08] 2025-10-13 02:33:03,391 | INFO     | [monitor] control thread has ended
[2025-10-13 04:33:08] 2025-10-13 02:33:08,259 | INFO     | all workflow threads have been joined
[2025-10-13 04:33:08] 2025-10-13 02:33:08,259 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:33:08] 2025-10-13 02:33:08,259 | INFO     | traces error code: 0
[2025-10-13 04:33:08] 2025-10-13 02:33:08,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:33:08] 2025-10-13 02:33:08,336 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:33:08] 2025-10-13 02:33:08,340 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:33:08] 2025-10-13 02:33:08,344 [wrapper] pilotpid: 1209965
[2025-10-13 04:33:08] 2025-10-13 02:33:08,348 [wrapper] Pilot exit status: 0
[2025-10-13 04:33:08] 2025-10-13 02:33:08,359 [wrapper] pandaids: 6840181791
[2025-10-13 04:33:08] 2025-10-13 02:33:08,380 [wrapper] cleanup supervisor_pilot 1226606 1209966
[2025-10-13 04:33:08] 2025-10-13 02:33:08,383 [wrapper] Test setup, not cleaning
[2025-10-13 04:33:08] 2025-10-13 02:33:08,387 [wrapper] apfmon messages muted
[2025-10-13 04:33:08] 2025-10-13 02:33:08,390 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:33:08] 2025-10-13 02:33:08,393 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:33:08]  *** Error codes and diagnostics ***
[2025-10-13 04:33:08]     "exeErrorCode": 0,
[2025-10-13 04:33:08]     "exeErrorDiag": "",
[2025-10-13 04:33:08]     "pilotErrorCode": 0,
[2025-10-13 04:33:08]     "pilotErrorDiag": "",
[2025-10-13 04:33:08]  *** Listing of results directory ***
[2025-10-13 04:33:08] total 409536
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:55 pilot3.tar.gz
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:23 queuedata.json
[2025-10-13 04:33:08] -rwx------ 1 boinc boinc     36292 Oct 12 16:24 runpilot2-wrapper.sh
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc       100 Oct 13 03:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:33:08] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 03:21 run_atlas
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc       105 Oct 13 03:21 job.xml
[2025-10-13 04:33:08] -rw-r--r-- 2 boinc boinc 220558471 Oct 13 03:21 EVNT.46676267._004235.pool.root.1
[2025-10-13 04:33:08] -rw-r--r-- 2 boinc boinc    569682 Oct 13 03:21 input.tar.gz
[2025-10-13 04:33:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:21 start_atlas.sh
[2025-10-13 04:33:08] drwxrwx--x 2 boinc boinc      4096 Oct 13 03:21 shared
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:21 boinc_setup_complete
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc      6375 Oct 13 03:21 init_data.xml
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:21 boinc_lockfile
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc      2550 Oct 13 03:21 pandaJob.out
[2025-10-13 04:33:08] -rw------- 1 boinc boinc    975595 Oct 13 03:21 agis_schedconf.cvmfs.json
[2025-10-13 04:33:08] -rw------- 1 boinc boinc   1560580 Oct 13 03:21 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:33:08] drwx------ 5 boinc boinc      4096 Oct 13 03:21 pilot3
[2025-10-13 04:33:08] -rw------- 1 boinc boinc 193150650 Oct 13 04:32 HITS.46676269._080666.pool.root.1
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc       529 Oct 13 04:32 boinc_task_state.xml
[2025-10-13 04:33:08] -rw------- 1 boinc boinc        95 Oct 13 04:32 pilot_heartbeat.json
[2025-10-13 04:33:08] -rw------- 1 boinc boinc      1022 Oct 13 04:32 memory_monitor_summary.json
[2025-10-13 04:33:08] -rw------- 1 boinc boinc    249597 Oct 13 04:32 log.46676269._080666.job.log.tgz.1
[2025-10-13 04:33:08] -rw------- 1 boinc boinc      7766 Oct 13 04:32 heartbeat.json
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc        27 Oct 13 04:32 wrapper_checkpoint.txt
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc      8192 Oct 13 04:32 boinc_mmap_file
[2025-10-13 04:33:08] -rw------- 1 boinc boinc      4752 Oct 13 04:33 pilotlog.txt
[2025-10-13 04:33:08] -rw------- 1 boinc boinc    629194 Oct 13 04:33 log.46676269._080666.job.log.1
[2025-10-13 04:33:08] -rw------- 1 boinc boinc       357 Oct 13 04:33 output.list
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc       620 Oct 13 04:33 runtime_log
[2025-10-13 04:33:08] -rw------- 1 boinc boinc    901120 Oct 13 04:33 result.tar.gz
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc      8777 Oct 13 04:33 runtime_log.err
[2025-10-13 04:33:08] -rw------- 1 boinc boinc       658 Oct 13 04:33 4o6MDmnACS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcEkNDmS25bjn.diag
[2025-10-13 04:33:08] -rw-r--r-- 1 boinc boinc     12735 Oct 13 04:33 stderr.txt
[2025-10-13 04:33:08] HITS file was successfully produced:
[2025-10-13 04:33:08] -rw------- 1 boinc boinc 193150650 Oct 13 04:32 shared/HITS.pool.root.1
[2025-10-13 04:33:08]  *** Contents of shared directory: ***
[2025-10-13 04:33:08] total 405480
[2025-10-13 04:33:08] -rw-r--r-- 2 boinc boinc 220558471 Oct 13 03:21 ATLAS.root_0
[2025-10-13 04:33:08] -rw-r--r-- 2 boinc boinc    569682 Oct 13 03:21 input.tar.gz
[2025-10-13 04:33:08] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:21 start_atlas.sh
[2025-10-13 04:33:08] -rw------- 1 boinc boinc 193150650 Oct 13 04:32 HITS.pool.root.1
[2025-10-13 04:33:08] -rw------- 1 boinc boinc    901120 Oct 13 04:33 result.tar.gz
04:33:10 (1206168): run_atlas exited; CPU time 15932.635373
04:33:10 (1206168): called boinc_finish(0)

</stderr_txt>
]]>

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