Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:44:52 (1637): wrapper (7.7.26015): starting
11:44:52 (1637): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:44:52] Arguments: --nthreads 12
[2025-10-12 11:44:52] Threads: 12
[2025-10-12 11:44:52] Checking for CVMFS
[2025-10-12 11:44:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:44:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:44:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:44:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:44:52] 2.11.2.0 2937 223078 100020 151625 3 57 19844018 20275200 1 130560 1 109354172 99.984 13748973 13152 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:44:52] CVMFS is ok
[2025-10-12 11:44:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:44:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:44:52] Further information can be found at the LHC@home message board.
[2025-10-12 11:44:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:44:52] Checking for apptainer binary...
[2025-10-12 11:44:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:44:52] Running /usr/bin/apptainer --version
[2025-10-12 11:44:52] apptainer version 1.3.2-1.el7
[2025-10-12 11:44:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:44:54] c-205-8.aglt2.org
[2025-10-12 11:44:54] apptainer works
[2025-10-12 11:44:54] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:44:54] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:44:54] Starting ATLAS job with PandaID=6839928778
[2025-10-12 11:44:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:01:23]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:01:23]  storage_token=
[2025-10-12 13:01:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839928778/log.46676269._077915.job.log.tgz.1
[2025-10-12 13:01:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/dd/log.46676269._077915.job.log.tgz.1
[2025-10-12 13:01:23]  workdir=None
[2025-10-12 13:01:23] ]
[2025-10-12 13:01:23] 2025-10-12 17:00:36,885 | INFO     | transferring file log.46676269._077915.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839928778/log.46676269._077915.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:01:23] 2025-10-12 17:00:36,885 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839928778/log.46676269._077915.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077915.job
[2025-10-12 13:01:23] 2025-10-12 17:00:36,907 | INFO     | adding to output.list: log.46676269._077915.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/dd/log.46676269._077915.job.log.tg
[2025-10-12 13:01:23] 2025-10-12 17:00:36,907 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:01:23] 2025-10-12 17:00:36,908 | INFO     | summary of transferred files:
[2025-10-12 13:01:23] 2025-10-12 17:00:36,908 | INFO     |  -- lfn=log.46676269._077915.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:01:23] 2025-10-12 17:00:36,908 | INFO     | stage-out finished correctly
[2025-10-12 13:01:23] 2025-10-12 17:00:37,196 | INFO     | time since job start (4528s) is within the limit (172800.0s)
[2025-10-12 13:01:23] 2025-10-12 17:00:38,108 | INFO     | monitor loop #337: job 0:6839928778 is in state 'finished'
[2025-10-12 13:01:23] 2025-10-12 17:00:38,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:01:23] 2025-10-12 17:00:39,202 | INFO     | time since job start (4530s) is within the limit (172800.0s)
[2025-10-12 13:01:23] 2025-10-12 17:00:39,476 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:01:23] 2025-10-12 17:00:40,130 | INFO     | job 6839928778 has state=finished
[2025-10-12 13:01:23] 2025-10-12 17:00:40,130 | INFO     | preparing for final server update for job 6839928778 in state='finished'
[2025-10-12 13:01:23] 2025-10-12 17:00:40,131 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:01:23] 2025-10-12 17:00:40,131 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:01:23] 2025-10-12 17:00:40,131 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:01:23] 2025-10-12 17:00:40,132 | INFO     | job 6839928778 has finished - writing final server update
[2025-10-12 13:01:23] 2025-10-12 17:00:40,132 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:01:23] 2025-10-12 17:00:40,133 | INFO     | executing command: lscpu
[2025-10-12 13:01:23] 2025-10-12 17:00:40,160 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:01:23] 2025-10-12 17:00:40,612 | INFO     | monitor loop #338: job 0:6839928778 is in state 'finished'
[2025-10-12 13:01:23] 2025-10-12 17:00:40,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:01:23] 2025-10-12 17:00:41,207 | INFO     | time since job start (4532s) is within the limit (172800.0s)
[2025-10-12 13:01:23] 2025-10-12 17:00:43,116 | INFO     | monitor loop #339: job 0:6839928778 is in state 'finished'
[2025-10-12 13:01:23] 2025-10-12 17:00:43,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:01:23] 2025-10-12 17:00:43,213 | INFO     | time since job start (4534s) is within the limit (172800.0s)
[2025-10-12 13:01:23] 2025-10-12 17:00:45,218 | INFO     | time since job start (4536s) is within the limit (172800.0s)
[2025-10-12 13:01:23] 2025-10-12 17:00:45,619 | INFO     | monitor loop #340: job 0:6839928778 is in state 'finished'
[2025-10-12 13:01:23] 2025-10-12 17:00:45,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,112 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:01:23] 2025-10-12 17:00:46,116 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 13:01:23] 2025-10-12 17:00:46,119 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928778/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,119 | INFO     | extracted standard info from prmon json
[2025-10-12 13:01:23] 2025-10-12 17:00:46,119 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:01:23] 2025-10-12 17:00:46,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:01:23] 2025-10-12 17:00:46,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:01:23] 2025-10-12 17:00:46,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:01:23] 2025-10-12 17:00:46,121 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:01:23] 2025-10-12 17:00:46,122 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,122 | INFO     | sum of deviations: -7062795330.0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,122 | INFO     | mean x: 1760286256.0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,122 | INFO     | mean y: 2839061.6119402987
[2025-10-12 13:01:23] 2025-10-12 17:00:46,122 | INFO     | -- intersect: 133340810724.83765
[2025-10-12 13:01:23] 2025-10-12 17:00:46,122 | INFO     | intersect: 133340810724.83765
[2025-10-12 13:01:23] 2025-10-12 17:00:46,123 | INFO     | chi2: 0.09964436720401197
[2025-10-12 13:01:23] 2025-10-12 17:00:46,123 | INFO     | -- intersect: 133340810724.83765
[2025-10-12 13:01:23] 2025-10-12 17:00:46,123 | INFO     | current memory leak: -75.75 B/s (using 67 data points, chi2=0.10)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,123 | INFO     | could have reported an average CPU frequency of 2048 MHz (6 samples)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,123 | INFO     | ..............................
[2025-10-12 13:01:23] 2025-10-12 17:00:46,123 | INFO     | . Timing measurements:
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . get job = 0 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . initial setup = 2 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . payload setup = 7 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . stage-in = 0 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . payload execution = 4499 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . stage-out = 0 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | . log creation = 0 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,124 | INFO     | ..............................
[2025-10-12 13:01:23] 2025-10-12 17:00:46,263 | INFO     | 
[2025-10-12 13:01:23] 2025-10-12 17:00:46,264 | INFO     | job summary report
[2025-10-12 13:01:23] 2025-10-12 17:00:46,267 | INFO     | --------------------------------------------------
[2025-10-12 13:01:23] 2025-10-12 17:00:46,268 | INFO     | PanDA job id: 6839928778
[2025-10-12 13:01:23] 2025-10-12 17:00:46,268 | INFO     | task id: 46676269
[2025-10-12 13:01:23] 2025-10-12 17:00:46,268 | INFO     | errors: (none)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,268 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:01:23] 2025-10-12 17:00:46,268 | INFO     | pilot state: finished 
[2025-10-12 13:01:23] 2025-10-12 17:00:46,268 | INFO     | transexitcode: 0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | exeerrorcode: 0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | exeerrordiag: 
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | exitcode: 0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | exitmsg: OK
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | cpuconsumptiontime: 48339 s
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | nevents: 400
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | neventsw: 0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,269 | INFO     | pid: 11979
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | pgrp: 11979
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | corecount: 12
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | event service: False
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4509: 2375280, 4510: 2375279, 4511: 2384333, 4514: 2384517, 4520: 2384711}
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | --------------------------------------------------
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | 
[2025-10-12 13:01:23] 2025-10-12 17:00:46,270 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:01:23] 2025-10-12 17:00:46,293 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,294 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,294 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,294 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,294 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,295 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,295 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,295 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,295 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,295 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,295 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,296 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,297 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,297 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:01:23] 2025-10-12 17:00:46,297 | INFO     | job 6839928778 has completed (purged errors)
[2025-10-12 13:01:23] 2025-10-12 17:00:46,298 | INFO     | overall cleanup function is called
[2025-10-12 13:01:23] 2025-10-12 17:00:47,303 | INFO     | --- collectZombieJob: --- 10, [11979]
[2025-10-12 13:01:23] 2025-10-12 17:00:47,303 | INFO     | zombie collector waiting for pid 11979
[2025-10-12 13:01:23] 2025-10-12 17:00:47,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:01:23] 2025-10-12 17:00:47,304 | INFO     | collected zombie processes
[2025-10-12 13:01:23] 2025-10-12 17:00:47,304 | INFO     | will attempt to kill all subprocesses of pid=11979
[2025-10-12 13:01:23] 2025-10-12 17:00:47,395 | INFO     | process IDs to be killed: [11979] (in reverse order)
[2025-10-12 13:01:23] 2025-10-12 17:00:47,449 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:01:23] 2025-10-12 17:00:47,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:01:23] 2025-10-12 17:00:47,452 | INFO     | did not find any defunct processes belonging to 11979
[2025-10-12 13:01:23] 2025-10-12 17:00:47,456 | INFO     | did not find any defunct processes belonging to 11979
[2025-10-12 13:01:23] 2025-10-12 17:00:47,456 | INFO     | ready for new job
[2025-10-12 13:01:23] 2025-10-12 17:00:47,456 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:01:23] 2025-10-12 17:00:47,458 | INFO     | ***************************************
[2025-10-12 13:01:23] 2025-10-12 17:00:47,458 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:01:23] 2025-10-12 17:00:47,458 | INFO     | ***************************************
[2025-10-12 13:01:23] 2025-10-12 17:00:47,458 | INFO     | 
[2025-10-12 13:01:23] 2025-10-12 17:00:47,459 | INFO     | architecture information:
[2025-10-12 13:01:23] 2025-10-12 17:00:47,459 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:01:23] 2025-10-12 17:00:47,475 | INFO     | cat /etc/os-release:
[2025-10-12 13:01:23] NAME="CentOS Linux"
[2025-10-12 13:01:23] VERSION="7 (Core)"
[2025-10-12 13:01:23] ID="centos"
[2025-10-12 13:01:23] ID_LIKE="rhel fedora"
[2025-10-12 13:01:23] VERSION_ID="7"
[2025-10-12 13:01:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:01:23] ANSI_COLOR="0;31"
[2025-10-12 13:01:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:01:23] HOME_URL="https://www.centos.org/"
[2025-10-12 13:01:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:01:23] 
[2025-10-12 13:01:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:01:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:01:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:01:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:01:23] 
[2025-10-12 13:01:23] 2025-10-12 17:00:47,475 | INFO     | ***************************************
[2025-10-12 13:01:23] 2025-10-12 17:00:47,978 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:01:23] 2025-10-12 17:00:47,995 | INFO     | sufficient remaining disk space (29352787968 B)
[2025-10-12 13:01:23] 2025-10-12 17:00:47,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:01:23] 2025-10-12 17:00:47,996 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:01:23] 2025-10-12 17:00:47,996 | INFO     | update_server=False
[2025-10-12 13:01:23] 2025-10-12 17:00:47,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:01:23] 2025-10-12 17:00:47,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:01:23] 2025-10-12 17:00:47,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:01:23] 2025-10-12 17:00:48,089 | INFO     | all payload control threads have been joined
[2025-10-12 13:01:23] 2025-10-12 17:00:48,122 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:01:23] 2025-10-12 17:00:48,123 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:01:23] 2025-10-12 17:00:48,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:01:23] 2025-10-12 17:00:48,123 | INFO     | will abort loop
[2025-10-12 13:01:23] 2025-10-12 17:00:48,392 | INFO     | all job control threads have been joined
[2025-10-12 13:01:23] 2025-10-12 17:00:49,002 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,002 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,021 | INFO     | all data control threads have been joined
[2025-10-12 13:01:23] 2025-10-12 17:00:49,095 | INFO     | [payload] control thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,129 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,244 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,261 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,398 | INFO     | [job] control thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,495 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,648 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,854 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:49,862 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:50,003 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:50,026 | INFO     | [data] control thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:50,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:01:23] 2025-10-12 17:00:50,308 | INFO     | [job] validate thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:50,494 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:00:54,072 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:01:23] 2025-10-12 17:01:16,145 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:01:23] 2025-10-12 17:01:17,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140599665211200)>', '<ExcThread(monitor, started 140598623328000)>']
[2025-10-12 13:01:23] 2025-10-12 17:01:18,421 | INFO     | PID=5623 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 13:01:23] 2025-10-12 17:01:18,422 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:01:23] 2025-10-12 17:01:18,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:01:23] 2025-10-12 17:01:18,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:01:23] 2025-10-12 17:01:18,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:01:23] 2025-10-12 17:01:18,422 | INFO     | [monitor] control thread has ended
[2025-10-12 13:01:23] 2025-10-12 17:01:22,779 | INFO     | all workflow threads have been joined
[2025-10-12 13:01:23] 2025-10-12 17:01:22,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:01:23] 2025-10-12 17:01:22,779 | INFO     | traces error code: 0
[2025-10-12 13:01:23] 2025-10-12 17:01:22,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:01:23] 2025-10-12 17:01:22,871 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:01:23] 2025-10-12 17:01:22,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:01:23] 2025-10-12 17:01:22,878 [wrapper] pilotpid: 5623
[2025-10-12 13:01:23] 2025-10-12 17:01:22,883 [wrapper] Pilot exit status: 0
[2025-10-12 13:01:23] 2025-10-12 17:01:22,898 [wrapper] pandaids: 6839928778
[2025-10-12 13:01:23] 2025-10-12 17:01:22,937 [wrapper] cleanup supervisor_pilot  5184 5624
[2025-10-12 13:01:23] 2025-10-12 17:01:22,940 [wrapper] Test setup, not cleaning
[2025-10-12 13:01:23] 2025-10-12 17:01:22,943 [wrapper] apfmon messages muted
[2025-10-12 13:01:23] 2025-10-12 17:01:22,946 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:01:23] 2025-10-12 17:01:22,950 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:01:23]  *** Error codes and diagnostics ***
[2025-10-12 13:01:23]     "exeErrorCode": 0,
[2025-10-12 13:01:23]     "exeErrorDiag": "",
[2025-10-12 13:01:23]     "pilotErrorCode": 0,
[2025-10-12 13:01:23]     "pilotErrorDiag": "",
[2025-10-12 13:01:23]  *** Listing of results directory ***
[2025-10-12 13:01:23] total 413664
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:10 pilot3.tar.gz
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:15 queuedata.json
[2025-10-12 13:01:23] -rwx------ 1 boincer umatlas     36292 Oct 12 08:15 runpilot2-wrapper.sh
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:01:23] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:44 run_atlas
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:44 job.xml
[2025-10-12 13:01:23] -rw-r--r-- 2 boincer umatlas 220666605 Oct 12 11:44 EVNT.46676267._003754.pool.root.1
[2025-10-12 13:01:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:44 start_atlas.sh
[2025-10-12 13:01:23] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:44 shared
[2025-10-12 13:01:23] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 11:44 input.tar.gz
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:44 boinc_lockfile
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:44 pandaJob.out
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas    975528 Oct 12 11:45 agis_schedconf.cvmfs.json
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas   1560580 Oct 12 11:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:01:23] drwx------ 5 boincer umatlas      4096 Oct 12 11:45 pilot3
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 12:54 init_data.xml
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas 196945335 Oct 12 13:00 HITS.46676269._077915.pool.root.1
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas       530 Oct 12 13:00 boinc_task_state.xml
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas      1049 Oct 12 13:00 memory_monitor_summary.json
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas    381316 Oct 12 13:00 log.46676269._077915.job.log.tgz.1
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas      7858 Oct 12 13:00 heartbeat.json
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:00 boinc_mmap_file
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:00 wrapper_checkpoint.txt
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas        95 Oct 12 13:01 pilot_heartbeat.json
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas      4931 Oct 12 13:01 pilotlog.txt
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas    657735 Oct 12 13:01 log.46676269._077915.job.log.1
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas       357 Oct 12 13:01 output.list
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:01 runtime_log
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas   1054720 Oct 12 13:01 result.tar.gz
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 13:01 runtime_log.err
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas       658 Oct 12 13:01 o1FODmAAAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOjjNDmo9HnEo.diag
[2025-10-12 13:01:23] -rw-r--r-- 1 boincer umatlas     22190 Oct 12 13:01 stderr.txt
[2025-10-12 13:01:23] HITS file was successfully produced:
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas 196945335 Oct 12 13:00 shared/HITS.pool.root.1
[2025-10-12 13:01:23]  *** Contents of shared directory: ***
[2025-10-12 13:01:23] total 409440
[2025-10-12 13:01:23] -rw-r--r-- 2 boincer umatlas 220666605 Oct 12 11:44 ATLAS.root_0
[2025-10-12 13:01:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:44 start_atlas.sh
[2025-10-12 13:01:23] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 11:44 input.tar.gz
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas 196945335 Oct 12 13:00 HITS.pool.root.1
[2025-10-12 13:01:23] -rw------- 1 boincer umatlas   1054720 Oct 12 13:01 result.tar.gz
13:01:24 (1637): run_atlas exited; CPU time 48308.140669
13:01:24 (1637): called boinc_finish(0)

</stderr_txt>
]]>

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