Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:37:23 (16190): wrapper (7.7.26015): starting
11:37:23 (16190): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:37:23] Arguments: --nthreads 8
[2025-10-12 11:37:23] Threads: 8
[2025-10-12 11:37:23] Checking for CVMFS
[2025-10-12 11:37:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:37:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:37:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:37:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:37:23] 2.11.2.0 12825 53049 129048 151625 0 188 17187951 18432000 1824 130560 0 47142794 99.978 2066051 20361 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:37:23] CVMFS is ok
[2025-10-12 11:37:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:37:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:37:23] Further information can be found at the LHC@home message board.
[2025-10-12 11:37:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:37:23] Checking for apptainer binary...
[2025-10-12 11:37:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:37:23] Running /usr/bin/apptainer --version
[2025-10-12 11:37:23] apptainer version 1.3.2-1.el7
[2025-10-12 11:37:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:37:24] c-206-8.aglt2.org
[2025-10-12 11:37:24] apptainer works
[2025-10-12 11:37:24] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:37:24] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:37:24] Starting ATLAS job with PandaID=6839821966
[2025-10-12 11:37:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:42:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:42:59] 2025-10-12 18:41:53,207 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:42:59] 2025-10-12 18:41:53,207 | INFO     | sum of square deviations: 1838657730.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,208 | INFO     | sum of deviations: 4539391676.999994
[2025-10-12 14:42:59] 2025-10-12 18:41:53,208 | INFO     | mean x: 1760288967.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,208 | INFO     | mean y: 2501159.955801105
[2025-10-12 14:42:59] 2025-10-12 18:41:53,208 | INFO     | -- intersect: -4343408878.403931
[2025-10-12 14:42:59] 2025-10-12 18:41:53,208 | INFO     | intersect: -4343408878.403931
[2025-10-12 14:42:59] 2025-10-12 18:41:53,208 | INFO     | chi2: 1.2546976980465108
[2025-10-12 14:42:59] 2025-10-12 18:41:53,209 | INFO     | sum of square deviations: 1690450300.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | sum of deviations: 4593729561.999998
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | mean x: 1760288814.5
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | mean y: 2501215.9431818184
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | -- intersect: -4781011653.276683
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | intersect: -4781011653.276683
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | chi2: 1.2553328306626887
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | current chi2=1.2553328306626887 (change=-0.050620369923914235 %)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,210 | INFO     | right removable region: 175
[2025-10-12 14:42:59] 2025-10-12 18:41:53,211 | INFO     | sum of square deviations: 1690450300.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,211 | INFO     | sum of deviations: -18794318624.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,212 | INFO     | mean x: 1760289119.5
[2025-10-12 14:42:59] 2025-10-12 18:41:53,212 | INFO     | mean y: 2524865.284090909
[2025-10-12 14:42:59] 2025-10-12 18:41:53,212 | INFO     | -- intersect: 19573307030.39324
[2025-10-12 14:42:59] 2025-10-12 18:41:53,212 | INFO     | intersect: 19573307030.39324
[2025-10-12 14:42:59] 2025-10-12 18:41:53,212 | INFO     | chi2: 0.059195266882996894
[2025-10-12 14:42:59] 2025-10-12 18:41:53,212 | INFO     | current chi2=0.059195266882996894 (change=95.28210923036198 %)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,213 | INFO     | sum of square deviations: 1550429070.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,213 | INFO     | sum of deviations: -19636598388.999992
[2025-10-12 14:42:59] 2025-10-12 18:41:53,213 | INFO     | mean x: 1760289272.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,214 | INFO     | mean y: 2525738.3450292395
[2025-10-12 14:42:59] 2025-10-12 18:41:53,214 | INFO     | -- intersect: 22297059652.578957
[2025-10-12 14:42:59] 2025-10-12 18:41:53,214 | INFO     | intersect: 22297059652.578957
[2025-10-12 14:42:59] 2025-10-12 18:41:53,214 | INFO     | chi2: 0.04182170796795958
[2025-10-12 14:42:59] 2025-10-12 18:41:53,214 | INFO     | current chi2=0.04182170796795958 (change=29.34957443367428 %)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,214 | INFO     | sum of square deviations: 1418361477.5
[2025-10-12 14:42:59] 2025-10-12 18:41:53,215 | INFO     | sum of deviations: -17865349837.5
[2025-10-12 14:42:59] 2025-10-12 18:41:53,215 | INFO     | mean x: 1760289424.5
[2025-10-12 14:42:59] 2025-10-12 18:41:53,215 | INFO     | mean y: 2523689.765060241
[2025-10-12 14:42:59] 2025-10-12 18:41:53,215 | INFO     | -- intersect: 22174718072.38079
[2025-10-12 14:42:59] 2025-10-12 18:41:53,216 | INFO     | intersect: 22174718072.38079
[2025-10-12 14:42:59] 2025-10-12 18:41:53,216 | INFO     | chi2: 0.0417764857231353
[2025-10-12 14:42:59] 2025-10-12 18:41:53,216 | INFO     | current chi2=0.0417764857231353 (change=0.10813103295286032 %)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,216 | INFO     | left removable region: 30
[2025-10-12 14:42:59] 2025-10-12 18:41:53,216 | INFO     | sum of square deviations: 945282840.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,217 | INFO     | sum of deviations: -10093750336.999998
[2025-10-12 14:42:59] 2025-10-12 18:41:53,217 | INFO     | mean x: 1760289699.0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,217 | INFO     | mean y: 2514670.351724138
[2025-10-12 14:42:59] 2025-10-12 18:41:53,217 | INFO     | -- intersect: 18798925639.262226
[2025-10-12 14:42:59] 2025-10-12 18:41:53,217 | INFO     | intersect: 18798925639.262226
[2025-10-12 14:42:59] 2025-10-12 18:41:53,217 | INFO     | chi2: 0.035775285904429535
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | -- intersect: 18798925639.262226
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | current memory leak: -10.68 B/s (using 145 data points, chi2=0.04)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | could have reported an average CPU frequency of 2393 MHz (10 samples)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | ..............................
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | . Timing measurements:
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | . get job = 0 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | . initial setup = 2 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,218 | INFO     | . payload setup = 4 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,219 | INFO     | . stage-in = 0 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,219 | INFO     | . payload execution = 11029 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,219 | INFO     | . stage-out = 1 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,219 | INFO     | . log creation = 0 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,219 | INFO     | ..............................
[2025-10-12 14:42:59] 2025-10-12 18:41:53,303 | INFO     | 
[2025-10-12 14:42:59] 2025-10-12 18:41:53,303 | INFO     | job summary report
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | --------------------------------------------------
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | PanDA job id: 6839821966
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | task id: 46676269
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | errors: (none)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | pilot state: finished 
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | transexitcode: 0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | exeerrorcode: 0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | exeerrordiag: 
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | exitcode: 0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,304 | INFO     | exitmsg: OK
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | cpuconsumptiontime: 83624 s
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | nevents: 400
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | neventsw: 0
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | pid: 26386
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | pgrp: 26386
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | corecount: 8
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | event service: False
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | sizes: {0: 2348027, 1: 2348883, 4: 2349145, 12: 2349173, 11037: 2378587, 11039: 2387585, 11041: 2387769, 11044: 2387793}
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | --------------------------------------------------
[2025-10-12 14:42:59] 2025-10-12 18:41:53,305 | INFO     | 
[2025-10-12 14:42:59] 2025-10-12 18:41:53,306 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 14:42:59] 2025-10-12 18:41:53,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:42:59] 2025-10-12 18:41:53,321 | INFO     | job 6839821966 has completed (purged errors)
[2025-10-12 14:42:59] 2025-10-12 18:41:53,321 | INFO     | overall cleanup function is called
[2025-10-12 14:42:59] 2025-10-12 18:41:54,327 | INFO     | --- collectZombieJob: --- 10, [26386]
[2025-10-12 14:42:59] 2025-10-12 18:41:54,327 | INFO     | zombie collector waiting for pid 26386
[2025-10-12 14:42:59] 2025-10-12 18:41:54,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:42:59] 2025-10-12 18:41:54,327 | INFO     | collected zombie processes
[2025-10-12 14:42:59] 2025-10-12 18:41:54,327 | INFO     | will attempt to kill all subprocesses of pid=26386
[2025-10-12 14:42:59] 2025-10-12 18:41:54,431 | INFO     | process IDs to be killed: [26386] (in reverse order)
[2025-10-12 14:42:59] 2025-10-12 18:41:54,468 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:42:59] 2025-10-12 18:41:54,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:42:59] 2025-10-12 18:41:54,471 | INFO     | did not find any defunct processes belonging to 26386
[2025-10-12 14:42:59] 2025-10-12 18:41:54,474 | INFO     | did not find any defunct processes belonging to 26386
[2025-10-12 14:42:59] 2025-10-12 18:41:54,474 | INFO     | ready for new job
[2025-10-12 14:42:59] 2025-10-12 18:41:54,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:42:59] 2025-10-12 18:41:54,475 | INFO     | ***************************************
[2025-10-12 14:42:59] 2025-10-12 18:41:54,475 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:42:59] 2025-10-12 18:41:54,476 | INFO     | ***************************************
[2025-10-12 14:42:59] 2025-10-12 18:41:54,476 | INFO     | 
[2025-10-12 14:42:59] 2025-10-12 18:41:54,476 | INFO     | architecture information:
[2025-10-12 14:42:59] 2025-10-12 18:41:54,477 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:42:59] 2025-10-12 18:41:54,487 | INFO     | cat /etc/os-release:
[2025-10-12 14:42:59] NAME="CentOS Linux"
[2025-10-12 14:42:59] VERSION="7 (Core)"
[2025-10-12 14:42:59] ID="centos"
[2025-10-12 14:42:59] ID_LIKE="rhel fedora"
[2025-10-12 14:42:59] VERSION_ID="7"
[2025-10-12 14:42:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:42:59] ANSI_COLOR="0;31"
[2025-10-12 14:42:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:42:59] HOME_URL="https://www.centos.org/"
[2025-10-12 14:42:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:42:59] 
[2025-10-12 14:42:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:42:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:42:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:42:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:42:59] 
[2025-10-12 14:42:59] 2025-10-12 18:41:54,488 | INFO     | ***************************************
[2025-10-12 14:42:59] 2025-10-12 18:41:54,990 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 14:42:59] 2025-10-12 18:41:55,002 | INFO     | sufficient remaining disk space (27733786624 B)
[2025-10-12 14:42:59] 2025-10-12 18:41:55,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:42:59] 2025-10-12 18:41:55,003 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:42:59] 2025-10-12 18:41:55,003 | INFO     | update_server=False
[2025-10-12 14:42:59] 2025-10-12 18:41:55,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:42:59] 2025-10-12 18:41:55,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:42:59] 2025-10-12 18:41:55,395 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:42:59] 2025-10-12 18:41:55,396 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:42:59] 2025-10-12 18:41:55,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:42:59] 2025-10-12 18:41:55,396 | INFO     | will abort loop
[2025-10-12 14:42:59] 2025-10-12 18:41:55,794 | INFO     | all job control threads have been joined
[2025-10-12 14:42:59] 2025-10-12 18:41:55,924 | INFO     | all data control threads have been joined
[2025-10-12 14:42:59] 2025-10-12 18:41:56,004 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,006 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,047 | INFO     | [job] validate thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,060 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:42:59] 2025-10-12 18:41:56,121 | INFO     | all payload control threads have been joined
[2025-10-12 14:42:59] 2025-10-12 18:41:56,151 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:42:59] 2025-10-12 18:41:56,397 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,398 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,401 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,466 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,800 | INFO     | [job] control thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,927 | INFO     | [data] control thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:56,976 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:57,126 | INFO     | [payload] control thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:41:58,396 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:42:00,075 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:42:05,750 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:42:59] 2025-10-12 18:42:06,755 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:42:59] 2025-10-12 18:42:25,317 | INFO     | PID=19941 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:42:59] 2025-10-12 18:42:25,317 | INFO     | .. there are 3 such processes running
[2025-10-12 14:42:59] 2025-10-12 18:42:25,318 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:42:59] 2025-10-12 18:42:25,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:42:59] 2025-10-12 18:42:25,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:42:59] 2025-10-12 18:42:52,042 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:42:59] 2025-10-12 18:42:54,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065143744320)>', '<ExcThread(monitor, started 140064570988288)>']
[2025-10-12 14:42:59] 2025-10-12 18:42:54,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:42:59] 2025-10-12 18:42:54,449 | INFO     | [monitor] control thread has ended
[2025-10-12 14:42:59] 2025-10-12 18:42:59,102 | INFO     | all workflow threads have been joined
[2025-10-12 14:42:59] 2025-10-12 18:42:59,102 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:42:59] 2025-10-12 18:42:59,113 | INFO     | traces error code: 0
[2025-10-12 14:42:59] 2025-10-12 18:42:59,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:42:59] 2025-10-12 18:42:59,203 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:42:59] 2025-10-12 18:42:59,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:42:59] 2025-10-12 18:42:59,208 [wrapper] pilotpid: 19941
[2025-10-12 14:42:59] 2025-10-12 18:42:59,210 [wrapper] Pilot exit status: 0
[2025-10-12 14:42:59] 2025-10-12 18:42:59,220 [wrapper] pandaids: 6839821966
[2025-10-12 14:42:59] 2025-10-12 18:42:59,248 [wrapper] cleanup supervisor_pilot 26225 19942
[2025-10-12 14:42:59] 2025-10-12 18:42:59,250 [wrapper] Test setup, not cleaning
[2025-10-12 14:42:59] 2025-10-12 18:42:59,252 [wrapper] apfmon messages muted
[2025-10-12 14:42:59] 2025-10-12 18:42:59,255 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:42:59] 2025-10-12 18:42:59,257 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:42:59]  *** Error codes and diagnostics ***
[2025-10-12 14:42:59]     "exeErrorCode": 0,
[2025-10-12 14:42:59]     "exeErrorDiag": "",
[2025-10-12 14:42:59]     "pilotErrorCode": 0,
[2025-10-12 14:42:59]     "pilotErrorDiag": "",
[2025-10-12 14:42:59]  *** Listing of results directory ***
[2025-10-12 14:42:59] total 411228
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 05:04 pilot3.tar.gz
[2025-10-12 14:42:59] -rwx------ 1 boincer umatlas     36292 Oct 12 05:30 runpilot2-wrapper.sh
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 05:30 queuedata.json
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:42:59] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:37 run_atlas
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:37 job.xml
[2025-10-12 14:42:59] -rw-r--r-- 2 boincer umatlas 218091300 Oct 12 11:37 EVNT.46676267._003572.pool.root.1
[2025-10-12 14:42:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:37 start_atlas.sh
[2025-10-12 14:42:59] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:37 shared
[2025-10-12 14:42:59] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 11:37 input.tar.gz
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:37 boinc_lockfile
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 11:37 pandaJob.out
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas    975528 Oct 12 11:37 agis_schedconf.cvmfs.json
[2025-10-12 14:42:59] drwx------ 5 boincer umatlas      4096 Oct 12 11:37 pilot3
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 14:37 init_data.xml
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas 195184324 Oct 12 14:41 HITS.46676269._075287.pool.root.1
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas       530 Oct 12 14:41 boinc_task_state.xml
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas      1067 Oct 12 14:41 memory_monitor_summary.json
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas   1560580 Oct 12 14:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas    408613 Oct 12 14:41 log.46676269._075287.job.log.tgz.1
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas      7856 Oct 12 14:41 heartbeat.json
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas        95 Oct 12 14:42 pilot_heartbeat.json
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:42 boinc_mmap_file
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas        28 Oct 12 14:42 wrapper_checkpoint.txt
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas      5079 Oct 12 14:42 pilotlog.txt
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas   1553272 Oct 12 14:42 log.46676269._075287.job.log.1
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas       357 Oct 12 14:42 output.list
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:42 runtime_log
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas   1976320 Oct 12 14:42 result.tar.gz
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas      8699 Oct 12 14:42 runtime_log.err
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas       660 Oct 12 14:42 nnsMDmja7R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZZTMDmpIExtm.diag
[2025-10-12 14:42:59] -rw-r--r-- 1 boincer umatlas     20910 Oct 12 14:42 stderr.txt
[2025-10-12 14:42:59] HITS file was successfully produced:
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas 195184324 Oct 12 14:41 shared/HITS.pool.root.1
[2025-10-12 14:42:59]  *** Contents of shared directory: ***
[2025-10-12 14:42:59] total 406104
[2025-10-12 14:42:59] -rw-r--r-- 2 boincer umatlas 218091300 Oct 12 11:37 ATLAS.root_0
[2025-10-12 14:42:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:37 start_atlas.sh
[2025-10-12 14:42:59] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 11:37 input.tar.gz
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas 195184324 Oct 12 14:41 HITS.pool.root.1
[2025-10-12 14:42:59] -rw------- 1 boincer umatlas   1976320 Oct 12 14:42 result.tar.gz
14:43:00 (16190): run_atlas exited; CPU time 83767.518182
14:43:00 (16190): called boinc_finish(0)

</stderr_txt>
]]>

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