Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:04:43 (69094): wrapper (7.7.26015): starting
12:04:43 (69094): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 12:04:43] Arguments: --nthreads 9
[2025-10-12 12:04:43] Threads: 9
[2025-10-12 12:04:43] Checking for CVMFS
[2025-10-12 12:04:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:04:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:04:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:04:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:04:45] 2.13.2.0 831533 129460 293056 151625 1 659 30268702 32935937 43849 16776704 0 274889180 99.650 248915167 20480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:04:45] CVMFS is ok
[2025-10-12 12:04:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:04:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:04:45] Further information can be found at the LHC@home message board.
[2025-10-12 12:04:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:04:45] Checking for apptainer binary...
[2025-10-12 12:04:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:04:45] Running /usr/bin/apptainer --version
[2025-10-12 12:04:45] apptainer version 1.4.3-1.el9
[2025-10-12 12:05:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:05:06] c6-2-11-2.aglt2.org
[2025-10-12 12:05:06] apptainer works
[2025-10-12 12:05:06] Set ATHENA_PROC_NUMBER=9
[2025-10-12 12:05:06] Set ATHENA_CORE_NUMBER=9
[2025-10-12 12:05:07] Starting ATLAS job with PandaID=6839774946
[2025-10-12 12:05:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:45:46 (329263): wrapper (7.7.26015): starting
12:45:46 (329263): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 12:45:46] Arguments: --nthreads 9
[2025-10-12 12:45:46] Threads: 9
[2025-10-12 12:45:46] This job has been restarted, cleaning up previous attempt
[2025-10-12 12:45:46] Checking for CVMFS
[2025-10-12 12:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:45:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:45:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:45:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:45:48] 2.13.2.0 831533 129501 278320 151627 0 378 30443560 32935937 39679 16776704 0 275240264 99.650 248962300 20478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:45:48] CVMFS is ok
[2025-10-12 12:45:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:45:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:45:48] Further information can be found at the LHC@home message board.
[2025-10-12 12:45:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:45:48] Checking for apptainer binary...
[2025-10-12 12:45:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:45:48] Running /usr/bin/apptainer --version
[2025-10-12 12:45:48] apptainer version 1.4.3-1.el9
[2025-10-12 12:45:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:45:48] c6-2-11-2.aglt2.org
[2025-10-12 12:45:48] apptainer works
[2025-10-12 12:45:48] Set ATHENA_PROC_NUMBER=9
[2025-10-12 12:45:48] Set ATHENA_CORE_NUMBER=9
[2025-10-12 12:45:48] Starting ATLAS job with PandaID=6839774946
[2025-10-12 12:45:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:29:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:29:15] 2025-10-12 23:28:37,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:29:15] 2025-10-12 23:28:37,967 | INFO     | time since job start (24136s) is within the limit (172800.0s)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,738 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 19:29:15] 2025-10-12 23:28:39,777 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2658.5227916666663
[2025-10-12 19:29:15] 2025-10-12 23:28:39,796 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6839774946/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,797 | INFO     | extracted standard info from prmon json
[2025-10-12 19:29:15] 2025-10-12 23:28:39,797 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:29:15] 2025-10-12 23:28:39,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:29:15] 2025-10-12 23:28:39,808 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:29:15] 2025-10-12 23:28:39,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:29:15] 2025-10-12 23:28:39,826 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:29:15] 2025-10-12 23:28:39,837 | INFO     | sum of square deviations: 18965359685.38073
[2025-10-12 19:29:15] 2025-10-12 23:28:39,869 | INFO     | sum of deviations: 88383724798.94427
[2025-10-12 19:29:15] 2025-10-12 23:28:39,869 | INFO     | mean x: 1760299642.5532994
[2025-10-12 19:29:15] 2025-10-12 23:28:39,869 | INFO     | mean y: 2134259.3121827412
[2025-10-12 19:29:15] 2025-10-12 23:28:39,870 | INFO     | -- intersect: -8201339956.4201765
[2025-10-12 19:29:15] 2025-10-12 23:28:39,870 | INFO     | intersect: -8201339956.4201765
[2025-10-12 19:29:15] 2025-10-12 23:28:39,870 | INFO     | chi2: 3.0138499409967427
[2025-10-12 19:29:15] 2025-10-12 23:28:39,871 | INFO     | sum of square deviations: 18252450397.866352
[2025-10-12 19:29:15] 2025-10-12 23:28:39,896 | INFO     | sum of deviations: 116222760555.78136
[2025-10-12 19:29:15] 2025-10-12 23:28:39,897 | INFO     | mean x: 1760299490.0539846
[2025-10-12 19:29:15] 2025-10-12 23:28:39,897 | INFO     | mean y: 2140170.915167095
[2025-10-12 19:29:15] 2025-10-12 23:28:39,897 | INFO     | -- intersect: -11206594091.029398
[2025-10-12 19:29:15] 2025-10-12 23:28:39,897 | INFO     | intersect: -11206594091.029398
[2025-10-12 19:29:15] 2025-10-12 23:28:39,897 | INFO     | chi2: 2.3090523090329227
[2025-10-12 19:29:15] 2025-10-12 23:28:39,897 | INFO     | current chi2=2.3090523090329227 (change=23.385292757167893 %)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,898 | INFO     | right removable region: 388
[2025-10-12 19:29:15] 2025-10-12 23:28:39,923 | INFO     | sum of square deviations: 18252437587.86635
[2025-10-12 19:29:15] 2025-10-12 23:28:39,927 | INFO     | sum of deviations: 12901002614.141388
[2025-10-12 19:29:15] 2025-10-12 23:28:39,927 | INFO     | mean x: 1760299795.0539846
[2025-10-12 19:29:15] 2025-10-12 23:28:39,927 | INFO     | mean y: 2150365.231362468
[2025-10-12 19:29:15] 2025-10-12 23:28:39,927 | INFO     | -- intersect: -1242046863.1301064
[2025-10-12 19:29:15] 2025-10-12 23:28:39,927 | INFO     | intersect: -1242046863.1301064
[2025-10-12 19:29:15] 2025-10-12 23:28:39,932 | INFO     | chi2: 1.0102743967230092
[2025-10-12 19:29:15] 2025-10-12 23:28:39,933 | INFO     | current chi2=1.0102743967230092 (change=66.47894166924281 %)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,933 | INFO     | sum of square deviations: 17557632580.95834
[2025-10-12 19:29:15] 2025-10-12 23:28:39,960 | INFO     | sum of deviations: -3936708759.8541718
[2025-10-12 19:29:15] 2025-10-12 23:28:39,960 | INFO     | mean x: 1760299947.5520833
[2025-10-12 19:29:15] 2025-10-12 23:28:39,960 | INFO     | mean y: 2154042.1927083335
[2025-10-12 19:29:15] 2025-10-12 23:28:39,960 | INFO     | -- intersect: 396842118.2499919
[2025-10-12 19:29:15] 2025-10-12 23:28:39,960 | INFO     | intersect: 396842118.2499919
[2025-10-12 19:29:15] 2025-10-12 23:28:39,961 | INFO     | chi2: 0.8754766756169562
[2025-10-12 19:29:15] 2025-10-12 23:28:39,961 | INFO     | current chi2=0.8754766756169562 (change=13.342684081007256 %)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,961 | INFO     | left removable region: 20
[2025-10-12 19:29:15] 2025-10-12 23:28:39,962 | INFO     | sum of square deviations: 15453097383.019066
[2025-10-12 19:29:15] 2025-10-12 23:28:39,976 | INFO     | time since job start (24138s) is within the limit (172800.0s)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,978 | INFO     | sum of deviations: 20828608062.45107
[2025-10-12 19:29:15] 2025-10-12 23:28:39,979 | INFO     | mean x: 1760300069.5516305
[2025-10-12 19:29:15] 2025-10-12 23:28:39,979 | INFO     | mean y: 2161584.0815217393
[2025-10-12 19:29:15] 2025-10-12 23:28:39,979 | INFO     | -- intersect: -2370476037.5053244
[2025-10-12 19:29:15] 2025-10-12 23:28:39,979 | INFO     | intersect: -2370476037.5053244
[2025-10-12 19:29:15] 2025-10-12 23:28:39,979 | INFO     | chi2: 0.15326369996891023
[2025-10-12 19:29:15] 2025-10-12 23:28:39,980 | INFO     | -- intersect: -2370476037.5053244
[2025-10-12 19:29:15] 2025-10-12 23:28:39,993 | INFO     | current memory leak: 1.35 B/s (using 368 data points, chi2=0.15)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | could have reported an average CPU frequency of 2675 MHz (17 samples)
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | ..............................
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | . Timing measurements:
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | . get job = 0 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | . initial setup = 2 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | . payload setup = 17 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | . stage-in = 0 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,994 | INFO     | . payload execution = 24041 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,995 | INFO     | . stage-out = 6 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,995 | INFO     | . log creation = 1 s
[2025-10-12 19:29:15] 2025-10-12 23:28:39,995 | INFO     | ..............................
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | 
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | job summary report
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | --------------------------------------------------
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | PanDA job id: 6839774946
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | task id: 46676269
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | errors: (none)
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:29:15] 2025-10-12 23:28:40,468 | INFO     | pilot state: finished 
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | transexitcode: 0
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | exeerrorcode: 0
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | exeerrordiag: 
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | exitcode: 0
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | exitmsg: OK
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | cpuconsumptiontime: 48468 s
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | nevents: 400
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | neventsw: 0
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | pid: 380990
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | pgrp: 380990
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | corecount: 9
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | event service: False
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 13: 2348913, 15: 2349231, 24: 2349259, 24065: 2384183, 24072: 2393181, 24073: 2393237, 24103: 2393495}
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | --------------------------------------------------
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | 
[2025-10-12 19:29:15] 2025-10-12 23:28:40,469 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 19:29:15] 2025-10-12 23:28:40,628 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,654 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:29:15] 2025-10-12 23:28:40,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:29:15] 2025-10-12 23:28:40,655 | INFO     | job 6839774946 has completed (purged errors)
[2025-10-12 19:29:15] 2025-10-12 23:28:40,655 | INFO     | overall cleanup function is called
[2025-10-12 19:29:15] 2025-10-12 23:28:41,683 | INFO     | --- collectZombieJob: --- 10, [380990]
[2025-10-12 19:29:15] 2025-10-12 23:28:41,683 | INFO     | zombie collector waiting for pid 380990
[2025-10-12 19:29:15] 2025-10-12 23:28:41,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:29:15] 2025-10-12 23:28:41,683 | INFO     | collected zombie processes
[2025-10-12 19:29:15] 2025-10-12 23:28:41,684 | INFO     | will attempt to kill all subprocesses of pid=380990
[2025-10-12 19:29:15] 2025-10-12 23:28:44,385 | INFO     | process IDs to be killed: [380990] (in reverse order)
[2025-10-12 19:29:15] 2025-10-12 23:28:44,661 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:29:15] 2025-10-12 23:28:44,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:29:15] 2025-10-12 23:28:44,686 | INFO     | did not find any defunct processes belonging to 380990
[2025-10-12 19:29:15] 2025-10-12 23:28:44,708 | INFO     | did not find any defunct processes belonging to 380990
[2025-10-12 19:29:15] 2025-10-12 23:28:44,709 | INFO     | ready for new job
[2025-10-12 19:29:15] 2025-10-12 23:28:44,709 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:29:15] 2025-10-12 23:28:44,712 | INFO     | ***************************************
[2025-10-12 19:29:15] 2025-10-12 23:28:44,712 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:29:15] 2025-10-12 23:28:44,712 | INFO     | ***************************************
[2025-10-12 19:29:15] 2025-10-12 23:28:44,712 | INFO     | 
[2025-10-12 19:29:15] 2025-10-12 23:28:44,749 | INFO     | architecture information:
[2025-10-12 19:29:15] 2025-10-12 23:28:44,759 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:29:15] 2025-10-12 23:28:44,825 | INFO     | cat /etc/os-release:
[2025-10-12 19:29:15] NAME="CentOS Linux"
[2025-10-12 19:29:15] VERSION="7 (Core)"
[2025-10-12 19:29:15] ID="centos"
[2025-10-12 19:29:15] ID_LIKE="rhel fedora"
[2025-10-12 19:29:15] VERSION_ID="7"
[2025-10-12 19:29:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:29:15] ANSI_COLOR="0;31"
[2025-10-12 19:29:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:29:15] HOME_URL="https://www.centos.org/"
[2025-10-12 19:29:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:29:15] 
[2025-10-12 19:29:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:29:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:29:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:29:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:29:15] 
[2025-10-12 19:29:15] 2025-10-12 23:28:44,826 | INFO     | ***************************************
[2025-10-12 19:29:15] 2025-10-12 23:28:45,329 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 19:29:15] 2025-10-12 23:28:45,371 | INFO     | sufficient remaining disk space (94242865152 B)
[2025-10-12 19:29:15] 2025-10-12 23:28:45,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:29:15] 2025-10-12 23:28:45,371 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:29:15] 2025-10-12 23:28:45,371 | INFO     | update_server=False
[2025-10-12 19:29:15] 2025-10-12 23:28:45,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:29:15] 2025-10-12 23:28:45,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:29:15] 2025-10-12 23:28:45,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:29:15] 2025-10-12 23:28:46,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:29:15] 2025-10-12 23:28:46,068 | INFO     | aborting loop
[2025-10-12 19:29:15] 2025-10-12 23:28:46,377 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:46,401 | INFO     | all data control threads have been joined
[2025-10-12 19:29:15] 2025-10-12 23:28:46,510 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:46,670 | INFO     | all payload control threads have been joined
[2025-10-12 19:29:15] 2025-10-12 23:28:46,741 | INFO     | [job] validate thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:46,742 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:46,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:46,769 | INFO     | all job control threads have been joined
[2025-10-12 19:29:15] 2025-10-12 23:28:47,074 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,098 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,407 | INFO     | [data] control thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,649 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,676 | INFO     | [payload] control thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,718 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,775 | INFO     | [job] control thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,799 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,800 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:47,935 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:28:48,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:29:15] 2025-10-12 23:28:52,051 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:29:15] 2025-10-12 23:29:06,001 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:29:15] 2025-10-12 23:29:06,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716810417984)>', '<ExcThread(monitor, started 139716443739904)>']
[2025-10-12 19:29:15] 2025-10-12 23:29:11,667 | INFO     | all workflow threads have been joined
[2025-10-12 19:29:15] 2025-10-12 23:29:11,667 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:29:15] 2025-10-12 23:29:11,668 | INFO     | traces error code: 0
[2025-10-12 19:29:15] 2025-10-12 23:29:11,668 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:29:15] 2025-10-12 23:29:13,987 | INFO     | PID=348408 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 19:29:15] 2025-10-12 23:29:13,987 | INFO     | .. there are 44 such processes running
[2025-10-12 19:29:15] 2025-10-12 23:29:13,988 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:29:15] 2025-10-12 23:29:13,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:29:15] 2025-10-12 23:29:13,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:29:15] 2025-10-12 23:29:13,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:29:15] 2025-10-12 23:29:13,988 | INFO     | [monitor] control thread has ended
[2025-10-12 19:29:15] 2025-10-12 23:29:14,196 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:29:15] 2025-10-12 23:29:14,209 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:29:15] 2025-10-12 23:29:14,240 [wrapper] pilotpid: 348408
[2025-10-12 19:29:15] 2025-10-12 23:29:14,268 [wrapper] Pilot exit status: 0
[2025-10-12 19:29:15] 2025-10-12 23:29:14,473 [wrapper] pandaids: 6839774946 6839774946
[2025-10-12 19:29:15] 2025-10-12 23:29:14,700 [wrapper] cleanup supervisor_pilot 1967480 348409
[2025-10-12 19:29:15] 2025-10-12 23:29:14,718 [wrapper] Test setup, not cleaning
[2025-10-12 19:29:15] 2025-10-12 23:29:14,720 [wrapper] apfmon messages muted
[2025-10-12 19:29:15] 2025-10-12 23:29:14,723 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:29:15] 2025-10-12 23:29:14,725 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:29:15]  *** Error codes and diagnostics ***
[2025-10-12 19:29:15]     "exeErrorCode": 0,
[2025-10-12 19:29:15]     "exeErrorDiag": "",
[2025-10-12 19:29:15]     "pilotErrorCode": 0,
[2025-10-12 19:29:15]     "pilotErrorDiag": "",
[2025-10-12 19:29:15]  *** Listing of results directory ***
[2025-10-12 19:29:15] total 635904
[2025-10-12 19:29:15] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 04:37 pilot3.tar.gz
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 04:46 queuedata.json
[2025-10-12 19:29:15] -rwx------. 1 boincer umatlas     36292 Oct 12 04:46 runpilot2-wrapper.sh
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:29:15] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:04 run_atlas
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:04 job.xml
[2025-10-12 19:29:15] -rw-r--r--. 3 boincer umatlas 219744670 Oct 12 12:04 EVNT.46676267._003549.pool.root.1
[2025-10-12 19:29:15] -rw-r--r--. 3 boincer umatlas 219744670 Oct 12 12:04 ATLAS.root_0
[2025-10-12 19:29:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:04 start_atlas.sh
[2025-10-12 19:29:15] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:04 shared
[2025-10-12 19:29:15] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 12:04 input.tar.gz
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:04 boinc_lockfile
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:45 pandaJob.out
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas    975528 Oct 12 12:46 agis_schedconf.cvmfs.json
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas      6857 Oct 12 19:21 init_data.xml
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas 200902463 Oct 12 19:26 HITS.46676269._074692.pool.root.1
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas       530 Oct 12 19:26 boinc_task_state.xml
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas      1053 Oct 12 19:27 memory_monitor_summary.json
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas    597393 Oct 12 19:28 log.46676269._074692.job.log.tgz.1
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas      7839 Oct 12 19:28 heartbeat.json
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas        28 Oct 12 19:29 wrapper_checkpoint.txt
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 19:29 boinc_mmap_file
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas       822 Oct 12 19:29 pilotlog.txt
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas        96 Oct 12 19:29 pilot_heartbeat.json
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas   2837449 Oct 12 19:29 log.46676269._074692.job.log.1
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas       357 Oct 12 19:29 output.list
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas       620 Oct 12 19:29 runtime_log
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas   3450880 Oct 12 19:29 result.tar.gz
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas      8794 Oct 12 19:29 runtime_log.err
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas       784 Oct 12 19:29 4KiLDmMu6R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbXTMDmX7wh6n.diag
[2025-10-12 19:29:15] -rw-r--r--. 1 boincer umatlas     23408 Oct 12 19:29 stderr.txt
[2025-10-12 19:29:15] HITS file was successfully produced:
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas 200902463 Oct 12 19:26 shared/HITS.pool.root.1
[2025-10-12 19:29:15]  *** Contents of shared directory: ***
[2025-10-12 19:29:15] total 414748
[2025-10-12 19:29:15] -rw-r--r--. 3 boincer umatlas 219744670 Oct 12 12:04 ATLAS.root_0
[2025-10-12 19:29:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:04 start_atlas.sh
[2025-10-12 19:29:15] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 12:04 input.tar.gz
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas 200902463 Oct 12 19:26 HITS.pool.root.1
[2025-10-12 19:29:15] -rw-------. 1 boincer umatlas   3450880 Oct 12 19:29 result.tar.gz
19:29:16 (329263): run_atlas exited; CPU time 49815.870942
19:29:16 (329263): called boinc_finish(0)

</stderr_txt>
]]>

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