Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
13:35:55 (302223): wrapper (7.7.26015): starting
13:35:55 (302223): wrapper: running run_atlas (--nthreads 5)
[2025-10-12 13:35:55] Arguments: --nthreads 5
[2025-10-12 13:35:55] Threads: 5
[2025-10-12 13:35:55] Checking for CVMFS
[2025-10-12 13:35:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:35:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:35:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:35:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:35:55] 2.11.0.0 2490241 3442 105640 151629 0 188 2673195 4096000 6410 130560 0 17325974 99.997 261130 5149 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 13:35:55] CVMFS is ok
[2025-10-12 13:35:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:35:55] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 13:35:55] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 13:35:55] Further information can be found at the LHC@home message board.
[2025-10-12 13:35:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:35:55] Checking for apptainer binary...
[2025-10-12 13:35:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:35:55] Running /usr/bin/apptainer --version
[2025-10-12 13:35:55] apptainer version 1.4.3
[2025-10-12 13:35:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:35:55] x32-linux4
[2025-10-12 13:35:55] apptainer works
[2025-10-12 13:35:55] Set ATHENA_PROC_NUMBER=5
[2025-10-12 13:35:55] Set ATHENA_CORE_NUMBER=5
[2025-10-12 13:35:55] Starting ATLAS job with PandaID=6840181805
[2025-10-12 13:35:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:35:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:35:21] 2025-10-12 19:34:39,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:35:21] 2025-10-12 19:34:39,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:35:21] 2025-10-12 19:34:39,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:35:21] 2025-10-12 19:34:39,031 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:35:21] 2025-10-12 19:34:39,031 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | sum of deviations: 499876638.99999714
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | mean x: 1760294124.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | mean y: 2326425.752136752
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | -- intersect: -1769592301.2604744
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | intersect: -1769592301.2604744
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | chi2: 1.7675517242996823
[2025-10-12 15:35:21] 2025-10-12 19:34:39,032 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | sum of deviations: 6977970621.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | mean x: 1760293971.5
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | mean y: 2342040.589285714
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | -- intersect: -28195538696.560345
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | intersect: -28195538696.560345
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | chi2: 1.1040586555616225
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | current chi2=1.1040586555616225 (change=37.53740609774466 %)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,033 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | sum of deviations: 6644546817.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | mean x: 1760293819.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | mean y: 2341130.6261682245
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | -- intersect: -30791134308.97363
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | intersect: -30791134308.97363
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | chi2: 1.1058396215218163
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | current chi2=1.1058396215218163 (change=-0.16131081000291309 %)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | right removable region: 106
[2025-10-12 15:35:21] 2025-10-12 19:34:39,034 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | sum of deviations: -9338736257.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | mean x: 1760294276.5
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | mean y: 2350219.410714286
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | -- intersect: 37740058091.78351
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | intersect: 37740058091.78351
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | chi2: 0.70404338834767
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | current chi2=0.70404338834767 (change=60.16844210730991 %)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,035 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | sum of deviations: -7652781413.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | mean x: 1760294429.0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | mean y: 2345599.448598131
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | -- intersect: 35468393870.10289
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | intersect: 35468393870.10289
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | chi2: 0.7015677090300381
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | current chi2=0.7015677090300381 (change=0.3516373221602348 %)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | left removable region: 20
[2025-10-12 15:35:21] 2025-10-12 19:34:39,036 | INFO     | sum of square deviations: 197203697.5
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | sum of deviations: 295725255.00000006
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | mean x: 1760294398.5
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | mean y: 2357698.6744186045
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | -- intersect: -2637367197.312809
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | intersect: -2637367197.312809
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | chi2: 0.00012705515381878933
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | -- intersect: -2637367197.312809
[2025-10-12 15:35:21] 2025-10-12 19:34:39,037 | INFO     | current memory leak: 1.50 B/s (using 86 data points, chi2=0.00)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | could have reported an average CPU frequency of 3854 MHz (7 samples)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | ..............................
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . Timing measurements:
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . get job = 0 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . initial setup = 2 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . payload setup = 4 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . stage-in = 0 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . payload execution = 7085 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . stage-out = 0 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | . log creation = 0 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,038 | INFO     | ..............................
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | 
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | job summary report
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | --------------------------------------------------
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | PanDA job id: 6840181805
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | task id: 46676269
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | errors: (none)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | pilot state: finished 
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | transexitcode: 0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | exeerrorcode: 0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | exeerrordiag: 
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | exitcode: 0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | exitmsg: OK
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | cpuconsumptiontime: 28023 s
[2025-10-12 15:35:21] 2025-10-12 19:34:39,107 | INFO     | nevents: 400
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | neventsw: 0
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | pid: 314797
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | pgrp: 314797
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | corecount: 5
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | event service: False
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | sizes: {0: 2348892, 2: 2349154, 11: 2349182, 7093: 2376543, 7095: 2385555, 7098: 2385611, 7102: 2385933}
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | --------------------------------------------------
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | 
[2025-10-12 15:35:21] 2025-10-12 19:34:39,108 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-10-12 15:35:21] 2025-10-12 19:34:39,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,122 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,122 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,122 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,122 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | job 6840181805 has completed (purged errors)
[2025-10-12 15:35:21] 2025-10-12 19:34:39,123 | INFO     | overall cleanup function is called
[2025-10-12 15:35:21] 2025-10-12 19:34:40,131 | INFO     | --- collectZombieJob: --- 10, [314797]
[2025-10-12 15:35:21] 2025-10-12 19:34:40,131 | INFO     | zombie collector waiting for pid 314797
[2025-10-12 15:35:21] 2025-10-12 19:34:40,131 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:35:21] 2025-10-12 19:34:40,131 | INFO     | collected zombie processes
[2025-10-12 15:35:21] 2025-10-12 19:34:40,131 | INFO     | will attempt to kill all subprocesses of pid=314797
[2025-10-12 15:35:21] 2025-10-12 19:34:40,275 | INFO     | process IDs to be killed: [314797] (in reverse order)
[2025-10-12 15:35:21] 2025-10-12 19:34:40,327 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:35:21] 2025-10-12 19:34:40,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:35:21] 2025-10-12 19:34:40,331 | INFO     | did not find any defunct processes belonging to 314797
[2025-10-12 15:35:21] 2025-10-12 19:34:40,335 | INFO     | did not find any defunct processes belonging to 314797
[2025-10-12 15:35:21] 2025-10-12 19:34:40,336 | INFO     | ready for new job
[2025-10-12 15:35:21] 2025-10-12 19:34:40,336 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:35:21] 2025-10-12 19:34:40,337 | INFO     | ***************************************
[2025-10-12 15:35:21] 2025-10-12 19:34:40,337 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:35:21] 2025-10-12 19:34:40,337 | INFO     | ***************************************
[2025-10-12 15:35:21] 2025-10-12 19:34:40,337 | INFO     | 
[2025-10-12 15:35:21] 2025-10-12 19:34:40,339 | INFO     | architecture information:
[2025-10-12 15:35:21] 2025-10-12 19:34:40,339 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:35:21] 2025-10-12 19:34:40,351 | INFO     | cat /etc/os-release:
[2025-10-12 15:35:21] NAME="CentOS Linux"
[2025-10-12 15:35:21] VERSION="7 (Core)"
[2025-10-12 15:35:21] ID="centos"
[2025-10-12 15:35:21] ID_LIKE="rhel fedora"
[2025-10-12 15:35:21] VERSION_ID="7"
[2025-10-12 15:35:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:35:21] ANSI_COLOR="0;31"
[2025-10-12 15:35:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:35:21] HOME_URL="https://www.centos.org/"
[2025-10-12 15:35:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:35:21] 
[2025-10-12 15:35:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:35:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:35:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:35:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:35:21] 
[2025-10-12 15:35:21] 2025-10-12 19:34:40,351 | INFO     | ***************************************
[2025-10-12 15:35:21] 2025-10-12 19:34:40,854 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-10-12 15:35:21] 2025-10-12 19:34:40,866 | INFO     | sufficient remaining disk space (148675493888 B)
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | INFO     | update_server=False
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:35:21] 2025-10-12 19:34:40,867 | INFO     | aborting loop
[2025-10-12 15:35:21] 2025-10-12 19:34:41,648 | INFO     | all payload control threads have been joined
[2025-10-12 15:35:21] 2025-10-12 19:34:41,695 | INFO     | all job control threads have been joined
[2025-10-12 15:35:21] 2025-10-12 19:34:41,728 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:35:21] 2025-10-12 19:34:41,817 | INFO     | all data control threads have been joined
[2025-10-12 15:35:21] 2025-10-12 19:34:41,872 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:41,872 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:41,873 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,411 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,653 | INFO     | [payload] control thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,680 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,699 | INFO     | [job] validate thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,700 | INFO     | [job] control thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,819 | INFO     | [data] control thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,872 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:42,885 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:43,040 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:43,135 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:43,170 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:34:45,731 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:35:21] 2025-10-12 19:35:11,643 | INFO     | PID=306058 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 15:35:21] 2025-10-12 19:35:11,643 | INFO     | .. there are 8 such processes running
[2025-10-12 15:35:21] 2025-10-12 19:35:11,644 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:35:21] 2025-10-12 19:35:11,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:35:21] 2025-10-12 19:35:11,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:35:21] 2025-10-12 19:35:15,169 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:35:21] 2025-10-12 19:35:16,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692589942592)>', '<ExcThread(monitor, started 140692097582848)>']
[2025-10-12 15:35:21] 2025-10-12 19:35:16,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:35:21] 2025-10-12 19:35:16,669 | INFO     | [monitor] control thread has ended
[2025-10-12 15:35:21] 2025-10-12 19:35:21,659 | INFO     | all workflow threads have been joined
[2025-10-12 15:35:21] 2025-10-12 19:35:21,659 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:35:21] 2025-10-12 19:35:21,659 | INFO     | traces error code: 0
[2025-10-12 15:35:21] 2025-10-12 19:35:21,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:35:21] 2025-10-12 19:35:21,749 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:35:21] 2025-10-12 19:35:21,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:35:21] 2025-10-12 19:35:21,753 [wrapper] pilotpid: 306058
[2025-10-12 15:35:21] 2025-10-12 19:35:21,755 [wrapper] Pilot exit status: 0
[2025-10-12 15:35:21] 2025-10-12 19:35:21,764 [wrapper] pandaids: 6840181805
[2025-10-12 15:35:21] 2025-10-12 19:35:21,803 [wrapper] cleanup supervisor_pilot  488515 306059
[2025-10-12 15:35:21] 2025-10-12 19:35:21,807 [wrapper] Test setup, not cleaning
[2025-10-12 15:35:21] 2025-10-12 19:35:21,810 [wrapper] apfmon messages muted
[2025-10-12 15:35:21] 2025-10-12 19:35:21,813 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:35:21] 2025-10-12 19:35:21,816 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:35:21]  *** Error codes and diagnostics ***
[2025-10-12 15:35:21]     "exeErrorCode": 0,
[2025-10-12 15:35:21]     "exeErrorDiag": "",
[2025-10-12 15:35:21]     "pilotErrorCode": 0,
[2025-10-12 15:35:21]     "pilotErrorDiag": "",
[2025-10-12 15:35:21]  *** Listing of results directory ***
[2025-10-12 15:35:21] total 407168
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 09:55 pilot3.tar.gz
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:22 queuedata.json
[2025-10-12 15:35:21] -rwx------ 1 boinc boinc     36292 Oct 12 10:22 runpilot2-wrapper.sh
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc       100 Oct 12 13:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:35:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 13:35 run_atlas
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc       105 Oct 12 13:35 job.xml
[2025-10-12 15:35:21] -rw-r--r-- 2 boinc boinc 220558471 Oct 12 13:35 EVNT.46676267._004235.pool.root.1
[2025-10-12 15:35:21] -rw-r--r-- 2 boinc boinc     15120 Oct 12 13:35 start_atlas.sh
[2025-10-12 15:35:21] drwxrwx--x 2 boinc boinc      4096 Oct 12 13:35 shared
[2025-10-12 15:35:21] -rw-r--r-- 2 boinc boinc    569682 Oct 12 13:35 input.tar.gz
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc      9723 Oct 12 13:35 init_data.xml
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc         0 Oct 12 13:35 boinc_setup_complete
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc         0 Oct 12 13:35 boinc_lockfile
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc      2550 Oct 12 13:35 pandaJob.out
[2025-10-12 15:35:21] -rw------- 1 boinc boinc    975528 Oct 12 13:36 agis_schedconf.cvmfs.json
[2025-10-12 15:35:21] -rw------- 1 boinc boinc   1560580 Oct 12 13:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:35:21] drwx------ 5 boinc boinc      4096 Oct 12 13:36 pilot3
[2025-10-12 15:35:21] -rw------- 1 boinc boinc 189746408 Oct 12 15:34 HITS.46676269._080680.pool.root.1
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc       529 Oct 12 15:34 boinc_task_state.xml
[2025-10-12 15:35:21] -rw------- 1 boinc boinc      1038 Oct 12 15:34 memory_monitor_summary.json
[2025-10-12 15:35:21] -rw------- 1 boinc boinc    325976 Oct 12 15:34 log.46676269._080680.job.log.tgz.1
[2025-10-12 15:35:21] -rw------- 1 boinc boinc      7742 Oct 12 15:34 heartbeat.json
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc      8192 Oct 12 15:34 boinc_mmap_file
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc        27 Oct 12 15:34 wrapper_checkpoint.txt
[2025-10-12 15:35:21] -rw------- 1 boinc boinc        95 Oct 12 15:35 pilot_heartbeat.json
[2025-10-12 15:35:21] -rw------- 1 boinc boinc      4830 Oct 12 15:35 pilotlog.txt
[2025-10-12 15:35:21] -rw------- 1 boinc boinc   1033239 Oct 12 15:35 log.46676269._080680.job.log.1
[2025-10-12 15:35:21] -rw------- 1 boinc boinc       357 Oct 12 15:35 output.list
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc       620 Oct 12 15:35 runtime_log
[2025-10-12 15:35:21] -rw------- 1 boinc boinc   1382400 Oct 12 15:35 result.tar.gz
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc      8764 Oct 12 15:35 runtime_log.err
[2025-10-12 15:35:21] -rw------- 1 boinc boinc       643 Oct 12 15:35 B3zKDmf8BS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmy4TMDm8SIdkm.diag
[2025-10-12 15:35:21] -rw-r--r-- 1 boinc boinc     20929 Oct 12 15:35 stderr.txt
[2025-10-12 15:35:21] HITS file was successfully produced:
[2025-10-12 15:35:21] -rw------- 1 boinc boinc 189746408 Oct 12 15:34 shared/HITS.pool.root.1
[2025-10-12 15:35:21]  *** Contents of shared directory: ***
[2025-10-12 15:35:21] total 402628
[2025-10-12 15:35:21] -rw-r--r-- 2 boinc boinc 220558471 Oct 12 13:35 ATLAS.root_0
[2025-10-12 15:35:21] -rw-r--r-- 2 boinc boinc     15120 Oct 12 13:35 start_atlas.sh
[2025-10-12 15:35:21] -rw-r--r-- 2 boinc boinc    569682 Oct 12 13:35 input.tar.gz
[2025-10-12 15:35:21] -rw------- 1 boinc boinc 189746408 Oct 12 15:34 HITS.pool.root.1
[2025-10-12 15:35:21] -rw------- 1 boinc boinc   1382400 Oct 12 15:35 result.tar.gz
15:35:23 (302223): run_atlas exited; CPU time 28118.778439
15:35:23 (302223): called boinc_finish(0)

</stderr_txt>
]]>

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