Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:36:09 (12037): wrapper (7.7.26015): starting
11:36:09 (12037): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:36:09] Arguments: --nthreads 12
[2025-10-12 11:36:09] Threads: 12
[2025-10-12 11:36:09] Checking for CVMFS
[2025-10-12 11:36:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:36:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:36:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:36:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:36:09] 2.11.2.0 30551 53011 88372 151625 3 57 14314002 20275201 1 130560 0 30652141 99.957 2402977 39804 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:36:09] CVMFS is ok
[2025-10-12 11:36:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:36:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:36:09] Further information can be found at the LHC@home message board.
[2025-10-12 11:36:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:36:09] Checking for apptainer binary...
[2025-10-12 11:36:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:36:09] Running /usr/bin/apptainer --version
[2025-10-12 11:36:09] apptainer version 1.3.2-1.el7
[2025-10-12 11:36:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:36:11] c-205-16.aglt2.org
[2025-10-12 11:36:11] apptainer works
[2025-10-12 11:36:11] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:36:11] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:36:11] Starting ATLAS job with PandaID=6839928901
[2025-10-12 11:36:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:48:50]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:48:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839928901/log.46676269._078038.job.log.tgz.1
[2025-10-12 12:48:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/5f/log.46676269._078038.job.log.tgz.1
[2025-10-12 12:48:50]  workdir=None
[2025-10-12 12:48:50] ]
[2025-10-12 12:48:50] 2025-10-12 16:48:09,951 | INFO     | transferring file log.46676269._078038.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839928901/log.46676269._078038.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 12:48:50] 2025-10-12 16:48:09,951 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839928901/log.46676269._078038.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078038.job
[2025-10-12 12:48:50] 2025-10-12 16:48:09,972 | INFO     | adding to output.list: log.46676269._078038.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/5f/log.46676269._078038.job.log.tg
[2025-10-12 12:48:50] 2025-10-12 16:48:09,973 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:48:50] 2025-10-12 16:48:09,973 | INFO     | summary of transferred files:
[2025-10-12 12:48:50] 2025-10-12 16:48:09,973 | INFO     |  -- lfn=log.46676269._078038.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:48:50] 2025-10-12 16:48:09,973 | INFO     | stage-out finished correctly
[2025-10-12 12:48:50] 2025-10-12 16:48:10,583 | INFO     | time since job start (4304s) is within the limit (172800.0s)
[2025-10-12 12:48:50] 2025-10-12 16:48:11,406 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:48:50] 2025-10-12 16:48:11,698 | INFO     | PID=15790 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 12:48:50] 2025-10-12 16:48:12,084 | WARNING  | process 23193 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 12:48:50] 2025-10-12 16:48:12,084 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928901/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:48:50] 2025-10-12 16:48:12,171 | INFO     | number of running child processes to parent process 23193: 1
[2025-10-12 12:48:50] 2025-10-12 16:48:12,171 | INFO     | maximum number of monitored processes: 6
[2025-10-12 12:48:50] 2025-10-12 16:48:12,699 | INFO     | time since job start (4306s) is within the limit (172800.0s)
[2025-10-12 12:48:50] 2025-10-12 16:48:12,721 | INFO     | job 6839928901 has state=finished
[2025-10-12 12:48:50] 2025-10-12 16:48:12,721 | INFO     | preparing for final server update for job 6839928901 in state='finished'
[2025-10-12 12:48:50] 2025-10-12 16:48:12,722 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:48:50] 2025-10-12 16:48:12,722 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:48:50] 2025-10-12 16:48:12,722 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:48:50] 2025-10-12 16:48:12,722 | INFO     | job 6839928901 has finished - writing final server update
[2025-10-12 12:48:50] 2025-10-12 16:48:12,722 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:48:50] 2025-10-12 16:48:12,723 | INFO     | executing command: lscpu
[2025-10-12 12:48:50] 2025-10-12 16:48:12,748 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:48:50] 2025-10-12 16:48:14,674 | INFO     | monitor loop #320: job 0:6839928901 is in state 'finished'
[2025-10-12 12:48:50] 2025-10-12 16:48:14,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:48:50] 2025-10-12 16:48:14,705 | INFO     | time since job start (4308s) is within the limit (172800.0s)
[2025-10-12 12:48:50] 2025-10-12 16:48:16,710 | INFO     | time since job start (4310s) is within the limit (172800.0s)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,177 | INFO     | monitor loop #321: job 0:6839928901 is in state 'finished'
[2025-10-12 12:48:50] 2025-10-12 16:48:17,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,555 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 12:48:50] 2025-10-12 16:48:17,558 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 12:48:50] 2025-10-12 16:48:17,561 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928901/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,562 | INFO     | extracted standard info from prmon json
[2025-10-12 12:48:50] 2025-10-12 16:48:17,562 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:48:50] 2025-10-12 16:48:17,562 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:48:50] 2025-10-12 16:48:17,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:48:50] 2025-10-12 16:48:17,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:48:50] 2025-10-12 16:48:17,564 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:48:50] 2025-10-12 16:48:17,565 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 12:48:50] 2025-10-12 16:48:17,565 | INFO     | sum of deviations: -4282911168.5
[2025-10-12 12:48:50] 2025-10-12 16:48:17,565 | INFO     | mean x: 1760285641.5
[2025-10-12 12:48:50] 2025-10-12 16:48:17,565 | INFO     | mean y: 2882557.703125
[2025-10-12 12:48:50] 2025-10-12 16:48:17,565 | INFO     | -- intersect: 92773385112.38654
[2025-10-12 12:48:50] 2025-10-12 16:48:17,565 | INFO     | intersect: 92773385112.38654
[2025-10-12 12:48:50] 2025-10-12 16:48:17,566 | INFO     | chi2: 0.10734289023674386
[2025-10-12 12:48:50] 2025-10-12 16:48:17,566 | INFO     | -- intersect: 92773385112.38654
[2025-10-12 12:48:50] 2025-10-12 16:48:17,566 | INFO     | current memory leak: -52.70 B/s (using 64 data points, chi2=0.11)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,566 | INFO     | could have reported an average CPU frequency of 2026 MHz (6 samples)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,566 | INFO     | ..............................
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . Timing measurements:
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . get job = 0 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . initial setup = 2 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . payload setup = 7 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . stage-in = 0 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . payload execution = 4276 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . stage-out = 0 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | . log creation = 0 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,567 | INFO     | ..............................
[2025-10-12 12:48:50] 2025-10-12 16:48:17,649 | INFO     | 
[2025-10-12 12:48:50] 2025-10-12 16:48:17,650 | INFO     | job summary report
[2025-10-12 12:48:50] 2025-10-12 16:48:17,650 | INFO     | --------------------------------------------------
[2025-10-12 12:48:50] 2025-10-12 16:48:17,650 | INFO     | PanDA job id: 6839928901
[2025-10-12 12:48:50] 2025-10-12 16:48:17,650 | INFO     | task id: 46676269
[2025-10-12 12:48:50] 2025-10-12 16:48:17,650 | INFO     | errors: (none)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:48:50] 2025-10-12 16:48:17,651 | INFO     | pilot state: finished 
[2025-10-12 12:48:50] 2025-10-12 16:48:17,651 | INFO     | transexitcode: 0
[2025-10-12 12:48:50] 2025-10-12 16:48:17,651 | INFO     | exeerrorcode: 0
[2025-10-12 12:48:50] 2025-10-12 16:48:17,651 | INFO     | exeerrordiag: 
[2025-10-12 12:48:50] 2025-10-12 16:48:17,651 | INFO     | exitcode: 0
[2025-10-12 12:48:50] 2025-10-12 16:48:17,651 | INFO     | exitmsg: OK
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | cpuconsumptiontime: 45324 s
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | nevents: 400
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | neventsw: 0
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | pid: 23193
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | pgrp: 23193
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | corecount: 12
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | event service: False
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4286: 2375196, 4287: 2384194, 4289: 2384250, 4295: 2384572}
[2025-10-12 12:48:50] 2025-10-12 16:48:17,652 | INFO     | --------------------------------------------------
[2025-10-12 12:48:50] 2025-10-12 16:48:17,653 | INFO     | 
[2025-10-12 12:48:50] 2025-10-12 16:48:17,653 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 12:48:50] 2025-10-12 16:48:17,676 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,677 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,679 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:48:50] 2025-10-12 16:48:17,680 | INFO     | job 6839928901 has completed (purged errors)
[2025-10-12 12:48:50] 2025-10-12 16:48:17,680 | INFO     | overall cleanup function is called
[2025-10-12 12:48:50] 2025-10-12 16:48:18,688 | INFO     | --- collectZombieJob: --- 10, [23193]
[2025-10-12 12:48:50] 2025-10-12 16:48:18,688 | INFO     | zombie collector waiting for pid 23193
[2025-10-12 12:48:50] 2025-10-12 16:48:18,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:48:50] 2025-10-12 16:48:18,689 | INFO     | collected zombie processes
[2025-10-12 12:48:50] 2025-10-12 16:48:18,689 | INFO     | will attempt to kill all subprocesses of pid=23193
[2025-10-12 12:48:50] 2025-10-12 16:48:18,781 | INFO     | process IDs to be killed: [23193] (in reverse order)
[2025-10-12 12:48:50] 2025-10-12 16:48:18,833 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:48:50] 2025-10-12 16:48:18,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:48:50] 2025-10-12 16:48:18,836 | INFO     | did not find any defunct processes belonging to 23193
[2025-10-12 12:48:50] 2025-10-12 16:48:18,839 | INFO     | did not find any defunct processes belonging to 23193
[2025-10-12 12:48:50] 2025-10-12 16:48:18,839 | INFO     | ready for new job
[2025-10-12 12:48:50] 2025-10-12 16:48:18,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:48:50] 2025-10-12 16:48:18,841 | INFO     | ***************************************
[2025-10-12 12:48:50] 2025-10-12 16:48:18,841 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:48:50] 2025-10-12 16:48:18,841 | INFO     | ***************************************
[2025-10-12 12:48:50] 2025-10-12 16:48:18,841 | INFO     | 
[2025-10-12 12:48:50] 2025-10-12 16:48:18,842 | INFO     | architecture information:
[2025-10-12 12:48:50] 2025-10-12 16:48:18,842 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:48:50] 2025-10-12 16:48:18,859 | INFO     | cat /etc/os-release:
[2025-10-12 12:48:50] NAME="CentOS Linux"
[2025-10-12 12:48:50] VERSION="7 (Core)"
[2025-10-12 12:48:50] ID="centos"
[2025-10-12 12:48:50] ID_LIKE="rhel fedora"
[2025-10-12 12:48:50] VERSION_ID="7"
[2025-10-12 12:48:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:48:50] ANSI_COLOR="0;31"
[2025-10-12 12:48:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:48:50] HOME_URL="https://www.centos.org/"
[2025-10-12 12:48:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:48:50] 
[2025-10-12 12:48:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:48:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:48:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:48:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:48:50] 
[2025-10-12 12:48:50] 2025-10-12 16:48:18,859 | INFO     | ***************************************
[2025-10-12 12:48:50] 2025-10-12 16:48:19,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 12:48:50] 2025-10-12 16:48:19,381 | INFO     | sufficient remaining disk space (29500637184 B)
[2025-10-12 12:48:50] 2025-10-12 16:48:19,381 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:48:50] 2025-10-12 16:48:19,382 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:48:50] 2025-10-12 16:48:19,382 | INFO     | update_server=False
[2025-10-12 12:48:50] 2025-10-12 16:48:19,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:48:50] 2025-10-12 16:48:19,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:48:50] 2025-10-12 16:48:19,680 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 12:48:50] 2025-10-12 16:48:19,680 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 12:48:50] 2025-10-12 16:48:19,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:48:50] 2025-10-12 16:48:19,681 | INFO     | will abort loop
[2025-10-12 12:48:50] 2025-10-12 16:48:19,902 | INFO     | all data control threads have been joined
[2025-10-12 12:48:50] 2025-10-12 16:48:20,387 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:20,388 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:20,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:48:50] 2025-10-12 16:48:20,602 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:20,685 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:20,743 | INFO     | all job control threads have been joined
[2025-10-12 12:48:50] 2025-10-12 16:48:20,753 | INFO     | all payload control threads have been joined
[2025-10-12 12:48:50] 2025-10-12 16:48:20,806 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:20,831 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:20,908 | INFO     | [data] control thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,262 | INFO     | [job] validate thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,329 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,426 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,718 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,746 | INFO     | [job] control thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,758 | INFO     | [payload] control thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:21,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:48:50] 2025-10-12 16:48:22,578 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:26,000 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:29,446 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:48:50] 2025-10-12 16:48:30,451 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:48:50] 2025-10-12 16:48:32,694 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:48:50] 2025-10-12 16:48:32,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377534019392)>', '<ExcThread(monitor, started 140376492988160)>']
[2025-10-12 12:48:50] 2025-10-12 16:48:37,838 | INFO     | all workflow threads have been joined
[2025-10-12 12:48:50] 2025-10-12 16:48:37,838 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:48:50] 2025-10-12 16:48:37,838 | INFO     | traces error code: 0
[2025-10-12 12:48:50] 2025-10-12 16:48:37,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:48:50] 2025-10-12 16:48:49,920 | INFO     | PID=15790 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 12:48:50] 2025-10-12 16:48:49,921 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:48:50] 2025-10-12 16:48:49,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:48:50] 2025-10-12 16:48:49,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:48:50] 2025-10-12 16:48:49,921 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:48:50] 2025-10-12 16:48:49,921 | INFO     | [monitor] control thread has ended
[2025-10-12 12:48:50] 2025-10-12 16:48:50,019 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:48:50] 2025-10-12 16:48:50,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:48:50] 2025-10-12 16:48:50,027 [wrapper] pilotpid: 15790
[2025-10-12 12:48:50] 2025-10-12 16:48:50,031 [wrapper] Pilot exit status: 0
[2025-10-12 12:48:50] 2025-10-12 16:48:50,047 [wrapper] pandaids: 6839928901
[2025-10-12 12:48:50] 2025-10-12 16:48:50,089 [wrapper] cleanup supervisor_pilot  9084 15791
[2025-10-12 12:48:50] 2025-10-12 16:48:50,093 [wrapper] Test setup, not cleaning
[2025-10-12 12:48:50] 2025-10-12 16:48:50,097 [wrapper] apfmon messages muted
[2025-10-12 12:48:50] 2025-10-12 16:48:50,101 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:48:50] 2025-10-12 16:48:50,105 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:48:50]  *** Error codes and diagnostics ***
[2025-10-12 12:48:50]     "exeErrorCode": 0,
[2025-10-12 12:48:50]     "exeErrorDiag": "",
[2025-10-12 12:48:50]     "pilotErrorCode": 0,
[2025-10-12 12:48:50]     "pilotErrorDiag": "",
[2025-10-12 12:48:50]  *** Listing of results directory ***
[2025-10-12 12:48:50] total 408532
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:10 pilot3.tar.gz
[2025-10-12 12:48:50] -rwx------ 1 boincer umatlas     36292 Oct 12 08:21 runpilot2-wrapper.sh
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:21 queuedata.json
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:48:50] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:36 run_atlas
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:36 job.xml
[2025-10-12 12:48:50] -rw-r--r-- 2 boincer umatlas 224191169 Oct 12 11:36 EVNT.46676267._003760.pool.root.1
[2025-10-12 12:48:50] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:36 start_atlas.sh
[2025-10-12 12:48:50] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:36 shared
[2025-10-12 12:48:50] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 11:36 input.tar.gz
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:36 boinc_lockfile
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:36 pandaJob.out
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas    975528 Oct 12 11:36 agis_schedconf.cvmfs.json
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas   1560580 Oct 12 11:36 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:48:50] drwx------ 5 boincer umatlas      4096 Oct 12 11:36 pilot3
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 12:46 init_data.xml
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas 188238391 Oct 12 12:47 HITS.46676269._078038.pool.root.1
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas       529 Oct 12 12:47 boinc_task_state.xml
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas      1048 Oct 12 12:48 memory_monitor_summary.json
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas    376008 Oct 12 12:48 log.46676269._078038.job.log.tgz.1
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas      7855 Oct 12 12:48 heartbeat.json
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 12:48 boinc_mmap_file
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas        27 Oct 12 12:48 wrapper_checkpoint.txt
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas        95 Oct 12 12:48 pilot_heartbeat.json
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas       745 Oct 12 12:48 pilotlog.txt
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas    627669 Oct 12 12:48 log.46676269._078038.job.log.1
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas       357 Oct 12 12:48 output.list
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas       620 Oct 12 12:48 runtime_log
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas   1024000 Oct 12 12:48 result.tar.gz
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas       659 Oct 12 12:48 WUxNDmzFAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9kjNDm7dGfrn.diag
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 12:48 runtime_log.err
[2025-10-12 12:48:50] -rw-r--r-- 1 boincer umatlas     22320 Oct 12 12:48 stderr.txt
[2025-10-12 12:48:50] HITS file was successfully produced:
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas 188238391 Oct 12 12:47 shared/HITS.pool.root.1
[2025-10-12 12:48:50]  *** Contents of shared directory: ***
[2025-10-12 12:48:50] total 404348
[2025-10-12 12:48:50] -rw-r--r-- 2 boincer umatlas 224191169 Oct 12 11:36 ATLAS.root_0
[2025-10-12 12:48:50] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:36 start_atlas.sh
[2025-10-12 12:48:50] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 11:36 input.tar.gz
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas 188238391 Oct 12 12:47 HITS.pool.root.1
[2025-10-12 12:48:50] -rw------- 1 boincer umatlas   1024000 Oct 12 12:48 result.tar.gz
12:48:51 (12037): run_atlas exited; CPU time 45296.459062
12:48:51 (12037): called boinc_finish(0)

</stderr_txt>
]]>

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