Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:34:29 (19736): wrapper (7.7.26015): starting
11:34:29 (19736): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:34:29] Arguments: --nthreads 8
[2025-10-12 11:34:29] Threads: 8
[2025-10-12 11:34:29] Checking for CVMFS
[2025-10-12 11:34:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:34:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:34:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:34:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:34:29] 2.11.2.0 2932 201594 119088 151625 0 56 13318799 20275201 1 130560 1 72864484 99.973 10263567 13758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:34:29] CVMFS is ok
[2025-10-12 11:34:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:34:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:34:29] Further information can be found at the LHC@home message board.
[2025-10-12 11:34:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:34:29] Checking for apptainer binary...
[2025-10-12 11:34:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:34:29] Running /usr/bin/apptainer --version
[2025-10-12 11:34:29] apptainer version 1.3.2-1.el7
[2025-10-12 11:34:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:34:31] c-204-17.aglt2.org
[2025-10-12 11:34:31] apptainer works
[2025-10-12 11:34:31] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:34:31] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:34:31] Starting ATLAS job with PandaID=6839987816
[2025-10-12 11:34:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:43:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:43:07] 2025-10-12 17:42:06,679 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:43:07] 2025-10-12 17:42:06,679 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:43:07] 2025-10-12 17:42:06,681 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:43:07] 2025-10-12 17:42:06,681 | INFO     | sum of square deviations: 605592750.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,682 | INFO     | sum of deviations: -18065726084.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,682 | INFO     | mean x: 1760287102.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,682 | INFO     | mean y: 2558360.984
[2025-10-12 13:43:07] 2025-10-12 17:42:06,682 | INFO     | -- intersect: 52514522240.88542
[2025-10-12 13:43:07] 2025-10-12 17:42:06,683 | INFO     | intersect: 52514522240.88542
[2025-10-12 13:43:07] 2025-10-12 17:42:06,683 | INFO     | chi2: 2.4244284082724183
[2025-10-12 13:43:07] 2025-10-12 17:42:06,683 | INFO     | sum of square deviations: 535786790.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,684 | INFO     | sum of deviations: -7938338883.000001
[2025-10-12 13:43:07] 2025-10-12 17:42:06,684 | INFO     | mean x: 1760286949.5
[2025-10-12 13:43:07] 2025-10-12 17:42:06,684 | INFO     | mean y: 2579877.5166666666
[2025-10-12 13:43:07] 2025-10-12 17:42:06,684 | INFO     | -- intersect: 26083391493.744286
[2025-10-12 13:43:07] 2025-10-12 17:42:06,684 | INFO     | intersect: 26083391493.744286
[2025-10-12 13:43:07] 2025-10-12 17:42:06,685 | INFO     | chi2: 1.58287021327074
[2025-10-12 13:43:07] 2025-10-12 17:42:06,685 | INFO     | current chi2=1.58287021327074 (change=34.7116125240155 %)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,685 | INFO     | sum of square deviations: 471562330.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,685 | INFO     | sum of deviations: -6601208939.999998
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | mean x: 1760286797.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | mean y: 2583054.3652173914
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | -- intersect: 24644120772.868652
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | intersect: 24644120772.868652
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | chi2: 1.5844933378243744
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | current chi2=1.5844933378243744 (change=-0.10254312324701141 %)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,686 | INFO     | right removable region: 114
[2025-10-12 13:43:07] 2025-10-12 17:42:06,687 | INFO     | sum of square deviations: 535786790.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,687 | INFO     | sum of deviations: -36684015544.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,687 | INFO     | mean x: 1760287254.5
[2025-10-12 13:43:07] 2025-10-12 17:42:06,688 | INFO     | mean y: 2598294.6333333333
[2025-10-12 13:43:07] 2025-10-12 17:42:06,688 | INFO     | -- intersect: 120525175952.77806
[2025-10-12 13:43:07] 2025-10-12 17:42:06,688 | INFO     | intersect: 120525175952.77806
[2025-10-12 13:43:07] 2025-10-12 17:42:06,688 | INFO     | chi2: 0.98722498479077
[2025-10-12 13:43:07] 2025-10-12 17:42:06,688 | INFO     | current chi2=0.98722498479077 (change=59.28009334397134 %)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,688 | INFO     | sum of square deviations: 471562330.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,689 | INFO     | sum of deviations: -34422402846.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,689 | INFO     | mean x: 1760287407.0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,689 | INFO     | mean y: 2592900.6086956523
[2025-10-12 13:43:07] 2025-10-12 17:42:06,689 | INFO     | -- intersect: 128497424641.08032
[2025-10-12 13:43:07] 2025-10-12 17:42:06,689 | INFO     | intersect: 128497424641.08032
[2025-10-12 13:43:07] 2025-10-12 17:42:06,690 | INFO     | chi2: 0.9838875561321085
[2025-10-12 13:43:07] 2025-10-12 17:42:06,690 | INFO     | current chi2=0.9838875561321085 (change=0.3380616080506528 %)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,690 | INFO     | left removable region: 20
[2025-10-12 13:43:07] 2025-10-12 17:42:06,690 | INFO     | sum of square deviations: 257521107.5
[2025-10-12 13:43:07] 2025-10-12 17:42:06,691 | INFO     | sum of deviations: -17750477382.499996
[2025-10-12 13:43:07] 2025-10-12 17:42:06,691 | INFO     | mean x: 1760287376.5
[2025-10-12 13:43:07] 2025-10-12 17:42:06,691 | INFO     | mean y: 2609237.670212766
[2025-10-12 13:43:07] 2025-10-12 17:42:06,691 | INFO     | -- intersect: 121336124639.95041
[2025-10-12 13:43:07] 2025-10-12 17:42:06,691 | INFO     | intersect: 121336124639.95041
[2025-10-12 13:43:07] 2025-10-12 17:42:06,691 | INFO     | chi2: 0.08616814185351811
[2025-10-12 13:43:07] 2025-10-12 17:42:06,692 | INFO     | -- intersect: 121336124639.95041
[2025-10-12 13:43:07] 2025-10-12 17:42:06,692 | INFO     | current memory leak: -68.93 B/s (using 94 data points, chi2=0.09)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,692 | INFO     | could have reported an average CPU frequency of 1985 MHz (8 samples)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,692 | INFO     | ..............................
[2025-10-12 13:43:07] 2025-10-12 17:42:06,692 | INFO     | . Timing measurements:
[2025-10-12 13:43:07] 2025-10-12 17:42:06,692 | INFO     | . get job = 0 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | . initial setup = 2 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | . payload setup = 8 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | . stage-in = 0 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | . payload execution = 7597 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | . stage-out = 0 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | . log creation = 0 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,693 | INFO     | ..............................
[2025-10-12 13:43:07] 2025-10-12 17:42:06,787 | INFO     | 
[2025-10-12 13:43:07] 2025-10-12 17:42:06,788 | INFO     | job summary report
[2025-10-12 13:43:07] 2025-10-12 17:42:06,788 | INFO     | --------------------------------------------------
[2025-10-12 13:43:07] 2025-10-12 17:42:06,788 | INFO     | PanDA job id: 6839987816
[2025-10-12 13:43:07] 2025-10-12 17:42:06,788 | INFO     | task id: 46676269
[2025-10-12 13:43:07] 2025-10-12 17:42:06,788 | INFO     | errors: (none)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:43:07] 2025-10-12 17:42:06,789 | INFO     | pilot state: finished 
[2025-10-12 13:43:07] 2025-10-12 17:42:06,789 | INFO     | transexitcode: 0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,789 | INFO     | exeerrorcode: 0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,789 | INFO     | exeerrordiag: 
[2025-10-12 13:43:07] 2025-10-12 17:42:06,789 | INFO     | exitcode: 0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,789 | INFO     | exitmsg: OK
[2025-10-12 13:43:07] 2025-10-12 17:42:06,790 | INFO     | cpuconsumptiontime: 57372 s
[2025-10-12 13:43:07] 2025-10-12 17:42:06,790 | INFO     | nevents: 400
[2025-10-12 13:43:07] 2025-10-12 17:42:06,790 | INFO     | neventsw: 0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,790 | INFO     | pid: 31020
[2025-10-12 13:43:07] 2025-10-12 17:42:06,790 | INFO     | pgrp: 31020
[2025-10-12 13:43:07] 2025-10-12 17:42:06,790 | INFO     | corecount: 8
[2025-10-12 13:43:07] 2025-10-12 17:42:06,791 | INFO     | event service: False
[2025-10-12 13:43:07] 2025-10-12 17:42:06,791 | INFO     | sizes: {0: 2348636, 1: 2348835, 7: 2349097, 11: 2349125, 7609: 2376699, 7610: 2385697, 7613: 2385881, 7621: 2386075}
[2025-10-12 13:43:07] 2025-10-12 17:42:06,791 | INFO     | --------------------------------------------------
[2025-10-12 13:43:07] 2025-10-12 17:42:06,791 | INFO     | 
[2025-10-12 13:43:07] 2025-10-12 17:42:06,791 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:43:07] 2025-10-12 17:42:06,820 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,822 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,823 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:43:07] 2025-10-12 17:42:06,824 | INFO     | job 6839987816 has completed (purged errors)
[2025-10-12 13:43:07] 2025-10-12 17:42:06,824 | INFO     | overall cleanup function is called
[2025-10-12 13:43:07] 2025-10-12 17:42:07,832 | INFO     | --- collectZombieJob: --- 10, [31020]
[2025-10-12 13:43:07] 2025-10-12 17:42:07,832 | INFO     | zombie collector waiting for pid 31020
[2025-10-12 13:43:07] 2025-10-12 17:42:07,833 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:43:07] 2025-10-12 17:42:07,833 | INFO     | collected zombie processes
[2025-10-12 13:43:07] 2025-10-12 17:42:07,833 | INFO     | will attempt to kill all subprocesses of pid=31020
[2025-10-12 13:43:07] 2025-10-12 17:42:07,922 | INFO     | process IDs to be killed: [31020] (in reverse order)
[2025-10-12 13:43:07] 2025-10-12 17:42:07,981 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:43:07] 2025-10-12 17:42:07,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:43:07] 2025-10-12 17:42:07,986 | INFO     | did not find any defunct processes belonging to 31020
[2025-10-12 13:43:07] 2025-10-12 17:42:07,989 | INFO     | did not find any defunct processes belonging to 31020
[2025-10-12 13:43:07] 2025-10-12 17:42:07,990 | INFO     | ready for new job
[2025-10-12 13:43:07] 2025-10-12 17:42:07,990 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:43:07] 2025-10-12 17:42:07,991 | INFO     | ***************************************
[2025-10-12 13:43:07] 2025-10-12 17:42:07,992 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:43:07] 2025-10-12 17:42:07,992 | INFO     | ***************************************
[2025-10-12 13:43:07] 2025-10-12 17:42:07,992 | INFO     | 
[2025-10-12 13:43:07] 2025-10-12 17:42:07,992 | INFO     | architecture information:
[2025-10-12 13:43:07] 2025-10-12 17:42:07,993 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:43:07] 2025-10-12 17:42:08,010 | INFO     | cat /etc/os-release:
[2025-10-12 13:43:07] NAME="CentOS Linux"
[2025-10-12 13:43:07] VERSION="7 (Core)"
[2025-10-12 13:43:07] ID="centos"
[2025-10-12 13:43:07] ID_LIKE="rhel fedora"
[2025-10-12 13:43:07] VERSION_ID="7"
[2025-10-12 13:43:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:43:07] ANSI_COLOR="0;31"
[2025-10-12 13:43:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:43:07] HOME_URL="https://www.centos.org/"
[2025-10-12 13:43:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:43:07] 
[2025-10-12 13:43:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:43:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:43:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:43:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:43:07] 
[2025-10-12 13:43:07] 2025-10-12 17:42:08,010 | INFO     | ***************************************
[2025-10-12 13:43:07] 2025-10-12 17:42:08,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:43:07] 2025-10-12 17:42:08,534 | INFO     | sufficient remaining disk space (18545115136 B)
[2025-10-12 13:43:07] 2025-10-12 17:42:08,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:43:07] 2025-10-12 17:42:08,534 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:43:07] 2025-10-12 17:42:08,535 | INFO     | update_server=False
[2025-10-12 13:43:07] 2025-10-12 17:42:08,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:43:07] 2025-10-12 17:42:08,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:43:07] 2025-10-12 17:42:08,882 | INFO     | all payload control threads have been joined
[2025-10-12 13:43:07] 2025-10-12 17:42:08,969 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:43:07] 2025-10-12 17:42:08,969 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:43:07] 2025-10-12 17:42:08,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:43:07] 2025-10-12 17:42:08,970 | INFO     | will abort loop
[2025-10-12 13:43:07] 2025-10-12 17:42:09,026 | INFO     | all data control threads have been joined
[2025-10-12 13:43:07] 2025-10-12 17:42:09,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:43:07] 2025-10-12 17:42:09,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:43:07] 2025-10-12 17:42:09,540 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:09,541 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:09,598 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:09,827 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:09,846 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:09,871 | INFO     | all job control threads have been joined
[2025-10-12 13:43:07] 2025-10-12 17:42:09,888 | INFO     | [payload] control thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:09,975 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,031 | INFO     | [data] control thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,224 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,231 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,238 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,238 | INFO     | [job] validate thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,530 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:10,877 | INFO     | [job] control thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:11,117 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:13,074 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:43:07] 2025-10-12 17:42:39,609 | INFO     | PID=23410 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:43:07] 2025-10-12 17:42:39,610 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:43:07] 2025-10-12 17:42:39,610 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:43:07] 2025-10-12 17:42:39,610 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:43:07] 2025-10-12 17:43:00,720 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:43:07] 2025-10-12 17:43:02,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692179064640)>', '<ExcThread(monitor, started 140691401316096)>']
[2025-10-12 13:43:07] 2025-10-12 17:43:02,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:43:07] 2025-10-12 17:43:02,695 | INFO     | [monitor] control thread has ended
[2025-10-12 13:43:07] 2025-10-12 17:43:07,120 | INFO     | all workflow threads have been joined
[2025-10-12 13:43:07] 2025-10-12 17:43:07,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:43:07] 2025-10-12 17:43:07,121 | INFO     | traces error code: 0
[2025-10-12 13:43:07] 2025-10-12 17:43:07,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:43:07] 2025-10-12 17:43:07,261 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:43:07] 2025-10-12 17:43:07,266 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:43:07] 2025-10-12 17:43:07,271 [wrapper] pilotpid: 23410
[2025-10-12 13:43:07] 2025-10-12 17:43:07,276 [wrapper] Pilot exit status: 0
[2025-10-12 13:43:07] 2025-10-12 17:43:07,295 [wrapper] pandaids: 6839987816
[2025-10-12 13:43:07] 2025-10-12 17:43:07,353 [wrapper] cleanup supervisor_pilot 27053 23411
[2025-10-12 13:43:07] 2025-10-12 17:43:07,359 [wrapper] Test setup, not cleaning
[2025-10-12 13:43:07] 2025-10-12 17:43:07,364 [wrapper] apfmon messages muted
[2025-10-12 13:43:07] 2025-10-12 17:43:07,369 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:43:07] 2025-10-12 17:43:07,374 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:43:07]  *** Error codes and diagnostics ***
[2025-10-12 13:43:07]     "exeErrorCode": 0,
[2025-10-12 13:43:07]     "exeErrorDiag": "",
[2025-10-12 13:43:07]     "pilotErrorCode": 0,
[2025-10-12 13:43:07]     "pilotErrorDiag": "",
[2025-10-12 13:43:07]  *** Listing of results directory ***
[2025-10-12 13:43:07] total 415212
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:10 pilot3.tar.gz
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:29 queuedata.json
[2025-10-12 13:43:07] -rwx------ 1 boincer umatlas     36292 Oct 12 08:30 runpilot2-wrapper.sh
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:43:07] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:34 run_atlas
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:34 job.xml
[2025-10-12 13:43:07] -rw-r--r-- 2 boincer umatlas 221162292 Oct 12 11:34 EVNT.46676267._001708.pool.root.1
[2025-10-12 13:43:07] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:34 start_atlas.sh
[2025-10-12 13:43:07] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:34 shared
[2025-10-12 13:43:07] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 11:34 input.tar.gz
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:34 boinc_lockfile
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:34 pandaJob.out
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas    975528 Oct 12 11:34 agis_schedconf.cvmfs.json
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas   1560580 Oct 12 11:34 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:43:07] drwx------ 5 boincer umatlas      4096 Oct 12 11:34 pilot3
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 13:37 init_data.xml
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas 197244414 Oct 12 13:41 HITS.46676269._078160.pool.root.1
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas       530 Oct 12 13:41 boinc_task_state.xml
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas      1050 Oct 12 13:41 memory_monitor_summary.json
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas    357400 Oct 12 13:41 log.46676269._078160.job.log.tgz.1
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas      7853 Oct 12 13:42 heartbeat.json
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas        95 Oct 12 13:42 pilot_heartbeat.json
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:42 boinc_mmap_file
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:43 wrapper_checkpoint.txt
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas      4932 Oct 12 13:43 pilotlog.txt
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas   1073638 Oct 12 13:43 log.46676269._078160.job.log.1
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas       357 Oct 12 13:43 output.list
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:43 runtime_log
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas   1454080 Oct 12 13:43 result.tar.gz
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 13:43 runtime_log.err
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas       660 Oct 12 13:43 NjuKDmyOAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJmjNDm7C4fZn.diag
[2025-10-12 13:43:07] -rw-r--r-- 1 boincer umatlas     20884 Oct 12 13:43 stderr.txt
[2025-10-12 13:43:07] HITS file was successfully produced:
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas 197244414 Oct 12 13:41 shared/HITS.pool.root.1
[2025-10-12 13:43:07]  *** Contents of shared directory: ***
[2025-10-12 13:43:07] total 410604
[2025-10-12 13:43:07] -rw-r--r-- 2 boincer umatlas 221162292 Oct 12 11:34 ATLAS.root_0
[2025-10-12 13:43:07] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:34 start_atlas.sh
[2025-10-12 13:43:07] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 11:34 input.tar.gz
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas 197244414 Oct 12 13:41 HITS.pool.root.1
[2025-10-12 13:43:07] -rw------- 1 boincer umatlas   1454080 Oct 12 13:43 result.tar.gz
13:43:09 (19736): run_atlas exited; CPU time 57318.039122
13:43:09 (19736): called boinc_finish(0)

</stderr_txt>
]]>

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