Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:03 (24497): wrapper (7.7.26015): starting
11:32:03 (24497): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:32:03] Arguments: --nthreads 8
[2025-10-12 11:32:03] Threads: 8
[2025-10-12 11:32:03] Checking for CVMFS
[2025-10-12 11:32:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:32:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:32:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:32:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:32:03] 2.11.2.0 2876 1101 62956 151625 0 56 13650350 20275200 1 130560 0 764643 99.989 39988 37975 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:32:03] CVMFS is ok
[2025-10-12 11:32:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:32:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:32:03] Further information can be found at the LHC@home message board.
[2025-10-12 11:32:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:32:03] Checking for apptainer binary...
[2025-10-12 11:32:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:32:03] Running /usr/bin/apptainer --version
[2025-10-12 11:32:03] apptainer version 1.3.2-1.el7
[2025-10-12 11:32:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:32:05] c-204-40.aglt2.org
[2025-10-12 11:32:05] apptainer works
[2025-10-12 11:32:05] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:32:05] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:32:05] Starting ATLAS job with PandaID=6840181589
[2025-10-12 11:32:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:38:41]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:38:41] 2025-10-12 17:37:40,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:38:41] 2025-10-12 17:37:40,685 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:38:41] 2025-10-12 17:37:40,685 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:38:41] 2025-10-12 17:37:40,687 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:38:41] 2025-10-12 17:37:40,687 | INFO     | sum of square deviations: 576985702.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,688 | INFO     | sum of deviations: -3859829900.000005
[2025-10-12 13:38:41] 2025-10-12 17:37:40,688 | INFO     | mean x: 1760286895.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,688 | INFO     | mean y: 2599120.487804878
[2025-10-12 13:38:41] 2025-10-12 17:37:40,688 | INFO     | -- intersect: 11778294716.319344
[2025-10-12 13:38:41] 2025-10-12 17:37:40,689 | INFO     | intersect: 11778294716.319344
[2025-10-12 13:38:41] 2025-10-12 17:37:40,689 | INFO     | chi2: 1.670183866379276
[2025-10-12 13:38:41] 2025-10-12 17:37:40,689 | INFO     | sum of square deviations: 509440249.5
[2025-10-12 13:38:41] 2025-10-12 17:37:40,690 | INFO     | sum of deviations: -2753351388.0000005
[2025-10-12 13:38:41] 2025-10-12 17:37:40,690 | INFO     | mean x: 1760286742.5
[2025-10-12 13:38:41] 2025-10-12 17:37:40,690 | INFO     | mean y: 2601620.13559322
[2025-10-12 13:38:41] 2025-10-12 17:37:40,690 | INFO     | -- intersect: 9516353135.641582
[2025-10-12 13:38:41] 2025-10-12 17:37:40,690 | INFO     | intersect: 9516353135.641582
[2025-10-12 13:38:41] 2025-10-12 17:37:40,691 | INFO     | chi2: 1.6724057185233008
[2025-10-12 13:38:41] 2025-10-12 17:37:40,691 | INFO     | current chi2=1.6724057185233008 (change=-0.13303039196764416 %)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,691 | INFO     | right removable region: 117
[2025-10-12 13:38:41] 2025-10-12 17:37:40,691 | INFO     | sum of square deviations: 509440249.5
[2025-10-12 13:38:41] 2025-10-12 17:37:40,692 | INFO     | sum of deviations: -23244036641.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,692 | INFO     | mean x: 1760287047.5
[2025-10-12 13:38:41] 2025-10-12 17:37:40,692 | INFO     | mean y: 2642105.1694915253
[2025-10-12 13:38:41] 2025-10-12 17:37:40,692 | INFO     | -- intersect: 80318590189.21996
[2025-10-12 13:38:41] 2025-10-12 17:37:40,692 | INFO     | intersect: 80318590189.21996
[2025-10-12 13:38:41] 2025-10-12 17:37:40,693 | INFO     | chi2: 0.1577875153624759
[2025-10-12 13:38:41] 2025-10-12 17:37:40,693 | INFO     | current chi2=0.1577875153624759 (change=90.55268593244544 %)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,693 | INFO     | sum of square deviations: 447383272.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,693 | INFO     | sum of deviations: -24832509032.000004
[2025-10-12 13:38:41] 2025-10-12 17:37:40,694 | INFO     | mean x: 1760287200.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,694 | INFO     | mean y: 2645878.053097345
[2025-10-12 13:38:41] 2025-10-12 17:37:40,694 | INFO     | -- intersect: 97709356273.14807
[2025-10-12 13:38:41] 2025-10-12 17:37:40,694 | INFO     | intersect: 97709356273.14807
[2025-10-12 13:38:41] 2025-10-12 17:37:40,694 | INFO     | chi2: 0.09897947927488687
[2025-10-12 13:38:41] 2025-10-12 17:37:40,694 | INFO     | current chi2=0.09897947927488687 (change=37.27039870834699 %)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,695 | INFO     | sum of square deviations: 390582207.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,695 | INFO     | sum of deviations: -22723089564.999992
[2025-10-12 13:38:41] 2025-10-12 17:37:40,695 | INFO     | mean x: 1760287352.5
[2025-10-12 13:38:41] 2025-10-12 17:37:40,695 | INFO     | mean y: 2640201.9444444445
[2025-10-12 13:38:41] 2025-10-12 17:37:40,695 | INFO     | -- intersect: 102411727083.35022
[2025-10-12 13:38:41] 2025-10-12 17:37:40,696 | INFO     | intersect: 102411727083.35022
[2025-10-12 13:38:41] 2025-10-12 17:37:40,696 | INFO     | chi2: 0.09626745549745111
[2025-10-12 13:38:41] 2025-10-12 17:37:40,696 | INFO     | current chi2=0.09626745549745111 (change=2.739985901424982 %)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,696 | INFO     | left removable region: 30
[2025-10-12 13:38:41] 2025-10-12 17:37:40,696 | INFO     | sum of square deviations: 204163828.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,697 | INFO     | sum of deviations: -13756533096.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,697 | INFO     | mean x: 1760287627.0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,697 | INFO     | mean y: 2620106.8735632184
[2025-10-12 13:38:41] 2025-10-12 17:37:40,697 | INFO     | -- intersect: 118610579393.88695
[2025-10-12 13:38:41] 2025-10-12 17:37:40,697 | INFO     | intersect: 118610579393.88695
[2025-10-12 13:38:41] 2025-10-12 17:37:40,698 | INFO     | chi2: 0.08662545410019375
[2025-10-12 13:38:41] 2025-10-12 17:37:40,698 | INFO     | -- intersect: 118610579393.88695
[2025-10-12 13:38:41] 2025-10-12 17:37:40,698 | INFO     | current memory leak: -67.38 B/s (using 87 data points, chi2=0.09)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,698 | INFO     | could have reported an average CPU frequency of 1993 MHz (8 samples)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | ..............................
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . Timing measurements:
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . get job = 0 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . initial setup = 2 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . payload setup = 8 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . stage-in = 0 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . payload execution = 7480 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . stage-out = 0 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,699 | INFO     | . log creation = 0 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,700 | INFO     | ..............................
[2025-10-12 13:38:41] 2025-10-12 17:37:40,789 | INFO     | 
[2025-10-12 13:38:41] 2025-10-12 17:37:40,789 | INFO     | job summary report
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | --------------------------------------------------
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | PanDA job id: 6840181589
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | task id: 46676269
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | errors: (none)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | pilot state: finished 
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | transexitcode: 0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | exeerrorcode: 0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,790 | INFO     | exeerrordiag: 
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | exitcode: 0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | exitmsg: OK
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | cpuconsumptiontime: 55239 s
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | nevents: 400
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | neventsw: 0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | pid: 3220
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | pgrp: 3220
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | corecount: 8
[2025-10-12 13:38:41] 2025-10-12 17:37:40,791 | INFO     | event service: False
[2025-10-12 13:38:41] 2025-10-12 17:37:40,792 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 7492: 2376564, 7493: 2385562, 7495: 2385746, 7501: 2385940}
[2025-10-12 13:38:41] 2025-10-12 17:37:40,792 | INFO     | --------------------------------------------------
[2025-10-12 13:38:41] 2025-10-12 17:37:40,792 | INFO     | 
[2025-10-12 13:38:41] 2025-10-12 17:37:40,792 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:38:41] 2025-10-12 17:37:40,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,822 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,822 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,822 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,822 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,822 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,823 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,823 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,823 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:38:41] 2025-10-12 17:37:40,824 | INFO     | job 6840181589 has completed (purged errors)
[2025-10-12 13:38:41] 2025-10-12 17:37:40,824 | INFO     | overall cleanup function is called
[2025-10-12 13:38:41] 2025-10-12 17:37:41,832 | INFO     | --- collectZombieJob: --- 10, [3220]
[2025-10-12 13:38:41] 2025-10-12 17:37:41,832 | INFO     | zombie collector waiting for pid 3220
[2025-10-12 13:38:41] 2025-10-12 17:37:41,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:38:41] 2025-10-12 17:37:41,832 | INFO     | collected zombie processes
[2025-10-12 13:38:41] 2025-10-12 17:37:41,832 | INFO     | will attempt to kill all subprocesses of pid=3220
[2025-10-12 13:38:41] 2025-10-12 17:37:41,921 | INFO     | process IDs to be killed: [3220] (in reverse order)
[2025-10-12 13:38:41] 2025-10-12 17:37:41,979 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:38:41] 2025-10-12 17:37:41,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:38:41] 2025-10-12 17:37:41,984 | INFO     | did not find any defunct processes belonging to 3220
[2025-10-12 13:38:41] 2025-10-12 17:37:41,987 | INFO     | did not find any defunct processes belonging to 3220
[2025-10-12 13:38:41] 2025-10-12 17:37:41,987 | INFO     | ready for new job
[2025-10-12 13:38:41] 2025-10-12 17:37:41,987 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:38:41] 2025-10-12 17:37:41,989 | INFO     | ***************************************
[2025-10-12 13:38:41] 2025-10-12 17:37:41,989 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:38:41] 2025-10-12 17:37:41,989 | INFO     | ***************************************
[2025-10-12 13:38:41] 2025-10-12 17:37:41,989 | INFO     | 
[2025-10-12 13:38:41] 2025-10-12 17:37:41,990 | INFO     | architecture information:
[2025-10-12 13:38:41] 2025-10-12 17:37:41,990 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:38:41] 2025-10-12 17:37:42,007 | INFO     | cat /etc/os-release:
[2025-10-12 13:38:41] NAME="CentOS Linux"
[2025-10-12 13:38:41] VERSION="7 (Core)"
[2025-10-12 13:38:41] ID="centos"
[2025-10-12 13:38:41] ID_LIKE="rhel fedora"
[2025-10-12 13:38:41] VERSION_ID="7"
[2025-10-12 13:38:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:38:41] ANSI_COLOR="0;31"
[2025-10-12 13:38:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:38:41] HOME_URL="https://www.centos.org/"
[2025-10-12 13:38:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:38:41] 
[2025-10-12 13:38:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:38:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:38:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:38:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:38:41] 
[2025-10-12 13:38:41] 2025-10-12 17:37:42,007 | INFO     | ***************************************
[2025-10-12 13:38:41] 2025-10-12 17:37:42,511 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:38:41] 2025-10-12 17:37:42,531 | INFO     | sufficient remaining disk space (18552455168 B)
[2025-10-12 13:38:41] 2025-10-12 17:37:42,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:38:41] 2025-10-12 17:37:42,532 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:38:41] 2025-10-12 17:37:42,532 | INFO     | update_server=False
[2025-10-12 13:38:41] 2025-10-12 17:37:42,533 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:38:41] 2025-10-12 17:37:42,533 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:38:41] 2025-10-12 17:37:42,906 | INFO     | all data control threads have been joined
[2025-10-12 13:38:41] 2025-10-12 17:37:43,306 | INFO     | all payload control threads have been joined
[2025-10-12 13:38:41] 2025-10-12 17:37:43,351 | INFO     | all job control threads have been joined
[2025-10-12 13:38:41] 2025-10-12 17:37:43,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:38:41] 2025-10-12 17:37:43,403 | INFO     | aborting loop
[2025-10-12 13:38:41] 2025-10-12 17:37:43,538 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:43,539 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:43,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:38:41] 2025-10-12 17:37:43,758 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:43,913 | INFO     | [data] control thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,248 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,312 | INFO     | [payload] control thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,357 | INFO     | [job] control thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,409 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,642 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,649 | INFO     | [job] validate thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,849 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,881 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:44,954 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:45,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:38:41] 2025-10-12 17:37:45,695 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:49,561 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:37:52,883 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:38:41] 2025-10-12 17:37:53,889 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:38:41] 2025-10-12 17:38:12,812 | INFO     | PID=28173 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:38:41] 2025-10-12 17:38:12,813 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:38:41] 2025-10-12 17:38:12,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:38:41] 2025-10-12 17:38:12,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:38:41] 2025-10-12 17:38:34,405 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:38:41] 2025-10-12 17:38:35,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937111549760)>', '<ExcThread(monitor, started 139935914903296)>']
[2025-10-12 13:38:41] 2025-10-12 17:38:36,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:38:41] 2025-10-12 17:38:36,933 | INFO     | [monitor] control thread has ended
[2025-10-12 13:38:41] 2025-10-12 17:38:40,987 | INFO     | all workflow threads have been joined
[2025-10-12 13:38:41] 2025-10-12 17:38:40,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:38:41] 2025-10-12 17:38:40,987 | INFO     | traces error code: 0
[2025-10-12 13:38:41] 2025-10-12 17:38:40,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:38:41] 2025-10-12 17:38:41,108 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:38:41] 2025-10-12 17:38:41,112 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:38:41] 2025-10-12 17:38:41,117 [wrapper] pilotpid: 28173
[2025-10-12 13:38:41] 2025-10-12 17:38:41,122 [wrapper] Pilot exit status: 0
[2025-10-12 13:38:41] 2025-10-12 17:38:41,141 [wrapper] pandaids: 6840181589
[2025-10-12 13:38:41] 2025-10-12 17:38:41,199 [wrapper] cleanup supervisor_pilot 22264 28174
[2025-10-12 13:38:41] 2025-10-12 17:38:41,204 [wrapper] Test setup, not cleaning
[2025-10-12 13:38:41] 2025-10-12 17:38:41,208 [wrapper] apfmon messages muted
[2025-10-12 13:38:41] 2025-10-12 17:38:41,213 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:38:41] 2025-10-12 17:38:41,218 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:38:41]  *** Error codes and diagnostics ***
[2025-10-12 13:38:41]     "exeErrorCode": 0,
[2025-10-12 13:38:41]     "exeErrorDiag": "",
[2025-10-12 13:38:41]     "pilotErrorCode": 0,
[2025-10-12 13:38:41]     "pilotErrorDiag": "",
[2025-10-12 13:38:41]  *** Listing of results directory ***
[2025-10-12 13:38:41] total 416124
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:55 pilot3.tar.gz
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 10:16 queuedata.json
[2025-10-12 13:38:41] -rwx------ 1 boincer umatlas     36292 Oct 12 10:16 runpilot2-wrapper.sh
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:38:41] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:32 run_atlas
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:32 job.xml
[2025-10-12 13:38:41] -rw-r--r-- 2 boincer umatlas 220064108 Oct 12 11:32 EVNT.46676267._004223.pool.root.1
[2025-10-12 13:38:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:32 start_atlas.sh
[2025-10-12 13:38:41] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:32 shared
[2025-10-12 13:38:41] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 11:32 input.tar.gz
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:32 boinc_lockfile
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:32 pandaJob.out
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas    975528 Oct 12 11:32 agis_schedconf.cvmfs.json
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas   1560580 Oct 12 11:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:38:41] drwx------ 5 boincer umatlas      4096 Oct 12 11:32 pilot3
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 13:27 init_data.xml
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas 199311377 Oct 12 13:36 HITS.46676269._080464.pool.root.1
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:37 boinc_task_state.xml
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas      1050 Oct 12 13:37 memory_monitor_summary.json
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas    352819 Oct 12 13:37 log.46676269._080464.job.log.tgz.1
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas      7850 Oct 12 13:37 heartbeat.json
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas        95 Oct 12 13:38 pilot_heartbeat.json
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:38 boinc_mmap_file
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:38 wrapper_checkpoint.txt
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas      4818 Oct 12 13:38 pilotlog.txt
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas   1058932 Oct 12 13:38 log.46676269._080464.job.log.1
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas       357 Oct 12 13:38 output.list
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:38 runtime_log
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas   1433600 Oct 12 13:38 result.tar.gz
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas       659 Oct 12 13:38 xLJODmk3BS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmw3TMDmHnfTin.diag
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 13:38 runtime_log.err
[2025-10-12 13:38:41] -rw-r--r-- 1 boincer umatlas     20848 Oct 12 13:38 stderr.txt
[2025-10-12 13:38:41] HITS file was successfully produced:
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas 199311377 Oct 12 13:36 shared/HITS.pool.root.1
[2025-10-12 13:38:41]  *** Contents of shared directory: ***
[2025-10-12 13:38:41] total 411536
[2025-10-12 13:38:41] -rw-r--r-- 2 boincer umatlas 220064108 Oct 12 11:32 ATLAS.root_0
[2025-10-12 13:38:41] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:32 start_atlas.sh
[2025-10-12 13:38:41] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 11:32 input.tar.gz
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas 199311377 Oct 12 13:36 HITS.pool.root.1
[2025-10-12 13:38:41] -rw------- 1 boincer umatlas   1433600 Oct 12 13:38 result.tar.gz
13:38:42 (24497): run_atlas exited; CPU time 55261.702943
13:38:42 (24497): called boinc_finish(0)

</stderr_txt>
]]>

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