Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:37:32 (2534911): wrapper (7.7.26015): starting
11:37:32 (2534911): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:37:32] Arguments: --nthreads 8
[2025-10-12 11:37:32] Threads: 8
[2025-10-12 11:37:32] Checking for CVMFS
[2025-10-12 11:37:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:37:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:37:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:37:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:37:34] 2.13.2.0 7534 77526 131252 151625 3 470 38369377 40960001 31864 16776704 0 465657232 99.774 265383679 44655 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:37:34] CVMFS is ok
[2025-10-12 11:37:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:37:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:37:34] Further information can be found at the LHC@home message board.
[2025-10-12 11:37:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:37:34] Checking for apptainer binary...
[2025-10-12 11:37:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:37:34] Running /usr/bin/apptainer --version
[2025-10-12 11:37:34] apptainer version 1.4.3-1.el9
[2025-10-12 11:37:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:37:34] c-208-39.aglt2.org
[2025-10-12 11:37:34] apptainer works
[2025-10-12 11:37:35] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:37:35] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:37:35] Starting ATLAS job with PandaID=6839928289
[2025-10-12 11:37:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:08:17]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:08:17] 2025-10-12 18:07:43,614 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839928289/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,614 | INFO     | extracted standard info from prmon json
[2025-10-12 14:08:17] 2025-10-12 18:07:43,614 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:08:17] 2025-10-12 18:07:43,614 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:08:17] 2025-10-12 18:07:43,614 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:08:17] 2025-10-12 18:07:43,615 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:08:17] 2025-10-12 18:07:43,629 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:08:17] 2025-10-12 18:07:43,630 | INFO     | sum of square deviations: 945263949.7655138
[2025-10-12 14:08:17] 2025-10-12 18:07:43,630 | INFO     | sum of deviations: 19926644230.317234
[2025-10-12 14:08:17] 2025-10-12 18:07:43,630 | INFO     | mean x: 1760288045.1241379
[2025-10-12 14:08:17] 2025-10-12 18:07:43,630 | INFO     | mean y: 2431786.5379310343
[2025-10-12 14:08:17] 2025-10-12 18:07:43,630 | INFO     | -- intersect: -37105334384.773865
[2025-10-12 14:08:17] 2025-10-12 18:07:43,630 | INFO     | intersect: -37105334384.773865
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | chi2: 3.2117053643854137
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | sum of square deviations: 850811854.6857142
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | sum of deviations: 28728844667.3143
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | mean x: 1760287892.6285715
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | mean y: 2445566.3714285716
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | -- intersect: -59436121442.97162
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | intersect: -59436121442.97162
[2025-10-12 14:08:17] 2025-10-12 18:07:43,631 | INFO     | chi2: 2.4465114025242536
[2025-10-12 14:08:17] 2025-10-12 18:07:43,632 | INFO     | current chi2=2.4465114025242536 (change=23.82516062483167 %)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,632 | INFO     | right removable region: 139
[2025-10-12 14:08:17] 2025-10-12 18:07:43,646 | INFO     | sum of square deviations: 850800874.6857142
[2025-10-12 14:08:17] 2025-10-12 18:07:43,646 | INFO     | sum of deviations: -11818204188.028568
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | mean x: 1760288197.6285715
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | mean y: 2482535.557142857
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | -- intersect: 24454085687.747173
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | intersect: 24454085687.747173
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | chi2: 0.8879459758765085
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | current chi2=0.8879459758765085 (change=72.35281960409765 %)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | sum of square deviations: 762849549.5999992
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | sum of deviations: -16458269429.133335
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | mean x: 1760288350.1333334
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | mean y: 2490527.562962963
[2025-10-12 14:08:17] 2025-10-12 18:07:43,647 | INFO     | -- intersect: 37980228018.068306
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | intersect: 37980228018.068306
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | chi2: 0.8253639728515882
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | current chi2=0.8253639728515882 (change=7.047951646286175 %)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | left removable region: 20
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | sum of square deviations: 522484537.8487386
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | sum of deviations: -5933528412.042017
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | mean x: 1760288472.1344538
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | mean y: 2505498.8151260503
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | -- intersect: 19992994989.28805
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | intersect: 19992994989.28805
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | chi2: 0.014133255070347196
[2025-10-12 14:08:17] 2025-10-12 18:07:43,648 | INFO     | -- intersect: 19992994989.28805
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | current memory leak: -11.36 B/s (using 119 data points, chi2=0.01)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | could have reported an average CPU frequency of 3678 MHz (8 samples)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | ..............................
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . Timing measurements:
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . get job = 0 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . initial setup = 8 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . payload setup = 36 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . stage-in = 0 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . payload execution = 8822 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . stage-out = 1 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | . log creation = 0 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,649 | INFO     | ..............................
[2025-10-12 14:08:17] 2025-10-12 18:07:43,813 | INFO     | 
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | job summary report
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | --------------------------------------------------
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | PanDA job id: 6839928289
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | task id: 46676269
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | errors: (none)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | pilot state: finished 
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | transexitcode: 0
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | exeerrorcode: 0
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | exeerrordiag: 
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | exitcode: 0
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | exitmsg: OK
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | cpuconsumptiontime: 25580 s
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | nevents: 400
[2025-10-12 14:08:17] 2025-10-12 18:07:43,833 | INFO     | neventsw: 0
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | pid: 2582510
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | pgrp: 2582510
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | corecount: 8
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | event service: False
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | sizes: {0: 2348686, 1: 2348885, 2: 2348913, 12: 2348913, 23: 2348941, 30: 2349231, 34: 2349387, 8862: 2377379, 8863: 2377378, 8864: 2386432, 8865: 2386488, 8876: 2
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | --------------------------------------------------
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | 
[2025-10-12 14:08:17] 2025-10-12 18:07:43,834 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 14:08:17] 2025-10-12 18:07:43,880 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:08:17] 2025-10-12 18:07:43,881 | INFO     | job 6839928289 has completed (purged errors)
[2025-10-12 14:08:17] 2025-10-12 18:07:43,882 | INFO     | overall cleanup function is called
[2025-10-12 14:08:17] 2025-10-12 18:07:43,997 | INFO     | PID=2548689 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:08:17] 2025-10-12 18:07:43,997 | INFO     | .. there are 30 such processes running
[2025-10-12 14:08:17] 2025-10-12 18:07:44,900 | INFO     | --- collectZombieJob: --- 10, [2582510]
[2025-10-12 14:08:17] 2025-10-12 18:07:44,900 | INFO     | zombie collector waiting for pid 2582510
[2025-10-12 14:08:17] 2025-10-12 18:07:44,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:08:17] 2025-10-12 18:07:44,900 | INFO     | collected zombie processes
[2025-10-12 14:08:17] 2025-10-12 18:07:44,900 | INFO     | will attempt to kill all subprocesses of pid=2582510
[2025-10-12 14:08:17] 2025-10-12 18:07:46,801 | INFO     | process IDs to be killed: [2582510] (in reverse order)
[2025-10-12 14:08:17] 2025-10-12 18:07:47,041 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:08:17] 2025-10-12 18:07:47,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:08:17] 2025-10-12 18:07:47,078 | INFO     | did not find any defunct processes belonging to 2582510
[2025-10-12 14:08:17] 2025-10-12 18:07:47,097 | INFO     | did not find any defunct processes belonging to 2582510
[2025-10-12 14:08:17] 2025-10-12 18:07:47,098 | INFO     | ready for new job
[2025-10-12 14:08:17] 2025-10-12 18:07:47,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:08:17] 2025-10-12 18:07:47,100 | INFO     | ***************************************
[2025-10-12 14:08:17] 2025-10-12 18:07:47,100 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:08:17] 2025-10-12 18:07:47,100 | INFO     | ***************************************
[2025-10-12 14:08:17] 2025-10-12 18:07:47,100 | INFO     | 
[2025-10-12 14:08:17] 2025-10-12 18:07:47,123 | INFO     | architecture information:
[2025-10-12 14:08:17] 2025-10-12 18:07:47,124 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:08:17] 2025-10-12 18:07:47,157 | INFO     | cat /etc/os-release:
[2025-10-12 14:08:17] NAME="CentOS Linux"
[2025-10-12 14:08:17] VERSION="7 (Core)"
[2025-10-12 14:08:17] ID="centos"
[2025-10-12 14:08:17] ID_LIKE="rhel fedora"
[2025-10-12 14:08:17] VERSION_ID="7"
[2025-10-12 14:08:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:08:17] ANSI_COLOR="0;31"
[2025-10-12 14:08:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:08:17] HOME_URL="https://www.centos.org/"
[2025-10-12 14:08:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:08:17] 
[2025-10-12 14:08:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:08:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:08:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:08:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:08:17] 
[2025-10-12 14:08:17] 2025-10-12 18:07:47,157 | INFO     | ***************************************
[2025-10-12 14:08:17] 2025-10-12 18:07:47,660 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 14:08:17] 2025-10-12 18:07:47,678 | INFO     | sufficient remaining disk space (170283499520 B)
[2025-10-12 14:08:17] 2025-10-12 18:07:47,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:08:17] 2025-10-12 18:07:47,678 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:08:17] 2025-10-12 18:07:47,678 | INFO     | update_server=False
[2025-10-12 14:08:17] 2025-10-12 18:07:47,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:08:17] 2025-10-12 18:07:47,799 | INFO     | all payload control threads have been joined
[2025-10-12 14:08:17] 2025-10-12 18:07:47,938 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:08:17] 2025-10-12 18:07:48,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:08:17] 2025-10-12 18:07:48,122 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:08:17] 2025-10-12 18:07:48,122 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:08:17] 2025-10-12 18:07:48,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:08:17] 2025-10-12 18:07:48,122 | INFO     | will abort loop
[2025-10-12 14:08:17] 2025-10-12 18:07:48,585 | INFO     | all data control threads have been joined
[2025-10-12 14:08:17] 2025-10-12 18:07:48,684 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:48,743 | INFO     | all job control threads have been joined
[2025-10-12 14:08:17] 2025-10-12 18:07:48,808 | INFO     | [payload] control thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:48,815 | INFO     | [job] validate thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:48,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:08:17] 2025-10-12 18:07:49,022 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,128 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,339 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,538 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,538 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,591 | INFO     | [data] control thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,706 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,759 | INFO     | [job] control thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,836 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:49,939 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:50,015 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:51,945 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:07:58,041 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:08:17] 2025-10-12 18:07:59,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:08:17] 2025-10-12 18:08:00,662 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:08:17] 2025-10-12 18:08:02,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663649261376)>', '<ExcThread(monitor, started 139662899259136)>']
[2025-10-12 14:08:17] 2025-10-12 18:08:07,377 | INFO     | all workflow threads have been joined
[2025-10-12 14:08:17] 2025-10-12 18:08:07,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:08:17] 2025-10-12 18:08:07,377 | INFO     | traces error code: 0
[2025-10-12 14:08:17] 2025-10-12 18:08:07,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:08:17] 2025-10-12 18:08:16,584 | INFO     | PID=2548689 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:08:17] 2025-10-12 18:08:16,585 | INFO     | .. there are 30 such processes running
[2025-10-12 14:08:17] 2025-10-12 18:08:16,585 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:08:17] 2025-10-12 18:08:16,586 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:08:17] 2025-10-12 18:08:16,586 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:08:17] 2025-10-12 18:08:16,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:08:17] 2025-10-12 18:08:16,586 | INFO     | [monitor] control thread has ended
[2025-10-12 14:08:17] 2025-10-12 18:08:17,097 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:08:17] 2025-10-12 18:08:17,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:08:17] 2025-10-12 18:08:17,133 [wrapper] pilotpid: 2548689
[2025-10-12 14:08:17] 2025-10-12 18:08:17,145 [wrapper] Pilot exit status: 0
[2025-10-12 14:08:17] 2025-10-12 18:08:17,235 [wrapper] pandaids: 6839928289
[2025-10-12 14:08:17] 2025-10-12 18:08:17,476 [wrapper] cleanup supervisor_pilot 3081363 2548690
[2025-10-12 14:08:17] 2025-10-12 18:08:17,508 [wrapper] Test setup, not cleaning
[2025-10-12 14:08:17] 2025-10-12 18:08:17,511 [wrapper] apfmon messages muted
[2025-10-12 14:08:17] 2025-10-12 18:08:17,518 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:08:17] 2025-10-12 18:08:17,544 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:08:17]  *** Error codes and diagnostics ***
[2025-10-12 14:08:17]     "exeErrorCode": 0,
[2025-10-12 14:08:17]     "exeErrorDiag": "",
[2025-10-12 14:08:17]     "pilotErrorCode": 0,
[2025-10-12 14:08:17]     "pilotErrorDiag": "",
[2025-10-12 14:08:17]  *** Listing of results directory ***
[2025-10-12 14:08:17] total 410620
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 07:54 pilot3.tar.gz
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:05 queuedata.json
[2025-10-12 14:08:17] -rwx------. 1 boincer umatlas     36292 Oct 12 08:06 runpilot2-wrapper.sh
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas       100 Oct 12 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:08:17] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 11:37 run_atlas
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas       105 Oct 12 11:37 job.xml
[2025-10-12 14:08:17] -rw-r--r--. 2 boincer umatlas 218718124 Oct 12 11:37 EVNT.46676267._003727.pool.root.1
[2025-10-12 14:08:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:37 start_atlas.sh
[2025-10-12 14:08:17] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 11:37 shared
[2025-10-12 14:08:17] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 11:37 input.tar.gz
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas         0 Oct 12 11:37 boinc_lockfile
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 11:37 pandaJob.out
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas    975528 Oct 12 11:38 agis_schedconf.cvmfs.json
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas   1560580 Oct 12 11:38 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:08:17] drwx------. 5 boincer umatlas      4096 Oct 12 11:38 pilot3
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas      7174 Oct 12 14:02 init_data.xml
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas 194804070 Oct 12 14:06 HITS.46676269._077728.pool.root.1
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas       530 Oct 12 14:06 boinc_task_state.xml
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas      1048 Oct 12 14:07 memory_monitor_summary.json
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas    396120 Oct 12 14:07 log.46676269._077728.job.log.tgz.1
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas        95 Oct 12 14:07 pilot_heartbeat.json
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas      7805 Oct 12 14:07 heartbeat.json
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 14:08 boinc_mmap_file
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas        27 Oct 12 14:08 wrapper_checkpoint.txt
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas       823 Oct 12 14:08 pilotlog.txt
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas   1127679 Oct 12 14:08 log.46676269._077728.job.log.1
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas       357 Oct 12 14:08 output.list
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas       620 Oct 12 14:08 runtime_log
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas   1546240 Oct 12 14:08 result.tar.gz
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 14:08 runtime_log.err
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas       657 Oct 12 14:08 0gWNDm109R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmEqTMDmcnWDFo.diag
[2025-10-12 14:08:17] -rw-r--r--. 1 boincer umatlas     21288 Oct 12 14:08 stderr.txt
[2025-10-12 14:08:17] HITS file was successfully produced:
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas 194804070 Oct 12 14:06 shared/HITS.pool.root.1
[2025-10-12 14:08:17]  *** Contents of shared directory: ***
[2025-10-12 14:08:17] total 405928
[2025-10-12 14:08:17] -rw-r--r--. 2 boincer umatlas 218718124 Oct 12 11:37 ATLAS.root_0
[2025-10-12 14:08:17] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:37 start_atlas.sh
[2025-10-12 14:08:17] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 11:37 input.tar.gz
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas 194804070 Oct 12 14:06 HITS.pool.root.1
[2025-10-12 14:08:17] -rw-------. 1 boincer umatlas   1546240 Oct 12 14:08 result.tar.gz
14:08:19 (2534911): run_atlas exited; CPU time 25837.256773
14:08:19 (2534911): called boinc_finish(0)

</stderr_txt>
]]>

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