Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:10 (25548): wrapper (7.7.26015): starting
11:32:10 (25548): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:32:10] Arguments: --nthreads 8
[2025-10-12 11:32:10] Threads: 8
[2025-10-12 11:32:10] Checking for CVMFS
[2025-10-12 11:32:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:32:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:32:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:32:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:32:10] 2.11.2.0 4697 53048 117140 151625 2 57 13490420 18432000 1833 130560 0 48826599 99.975 2403314 39649 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:32:10] CVMFS is ok
[2025-10-12 11:32:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:32:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:32:10] Further information can be found at the LHC@home message board.
[2025-10-12 11:32:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:32:10] Checking for apptainer binary...
[2025-10-12 11:32:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:32:10] Running /usr/bin/apptainer --version
[2025-10-12 11:32:10] apptainer version 1.3.2-1.el7
[2025-10-12 11:32:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:32:11] c-206-21.aglt2.org
[2025-10-12 11:32:11] apptainer works
[2025-10-12 11:32:11] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:32:11] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:32:11] Starting ATLAS job with PandaID=6839928205
[2025-10-12 11:32:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:31:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:31:45] 2025-10-12 18:30:57,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:31:45] 2025-10-12 18:30:57,729 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:31:45] 2025-10-12 18:30:57,730 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,731 | INFO     | sum of deviations: 5675119201.00001
[2025-10-12 14:31:45] 2025-10-12 18:30:57,731 | INFO     | mean x: 1760288475.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,731 | INFO     | mean y: 2499094.057142857
[2025-10-12 14:31:45] 2025-10-12 18:30:57,731 | INFO     | -- intersect: -6008967592.562718
[2025-10-12 14:31:45] 2025-10-12 18:30:57,731 | INFO     | intersect: -6008967592.562718
[2025-10-12 14:31:45] 2025-10-12 18:30:57,731 | INFO     | chi2: 1.4119269011206375
[2025-10-12 14:31:45] 2025-10-12 18:30:57,732 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | sum of deviations: 5634714508.999998
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | mean x: 1760288322.5
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | mean y: 2499049.529411765
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | -- intersect: -6508469002.467234
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | intersect: -6508469002.467234
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | chi2: 1.4127197035795749
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | current chi2=1.4127197035795749 (change=-0.05615038981891928 %)
[2025-10-12 14:31:45] 2025-10-12 18:30:57,733 | INFO     | right removable region: 169
[2025-10-12 14:31:45] 2025-10-12 18:30:57,734 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 14:31:45] 2025-10-12 18:30:57,734 | INFO     | sum of deviations: -19082831940.5
[2025-10-12 14:31:45] 2025-10-12 18:30:57,735 | INFO     | mean x: 1760288627.5
[2025-10-12 14:31:45] 2025-10-12 18:30:57,735 | INFO     | mean y: 2525997.0411764705
[2025-10-12 14:31:45] 2025-10-12 18:30:57,735 | INFO     | -- intersect: 22052929870.351803
[2025-10-12 14:31:45] 2025-10-12 18:30:57,735 | INFO     | intersect: 22052929870.351803
[2025-10-12 14:31:45] 2025-10-12 18:30:57,735 | INFO     | chi2: 0.06372579394588432
[2025-10-12 14:31:45] 2025-10-12 18:30:57,735 | INFO     | current chi2=0.06372579394588432 (change=95.48660813139082 %)
[2025-10-12 14:31:45] 2025-10-12 18:30:57,736 | INFO     | sum of square deviations: 1392881930.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,736 | INFO     | sum of deviations: -20776819539.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,736 | INFO     | mean x: 1760288780.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,737 | INFO     | mean y: 2527945.296969697
[2025-10-12 14:31:45] 2025-10-12 18:30:57,737 | INFO     | -- intersect: 26259744390.474396
[2025-10-12 14:31:45] 2025-10-12 18:30:57,737 | INFO     | intersect: 26259744390.474396
[2025-10-12 14:31:45] 2025-10-12 18:30:57,737 | INFO     | chi2: 0.04471361954970702
[2025-10-12 14:31:45] 2025-10-12 18:30:57,737 | INFO     | current chi2=0.04471361954970702 (change=29.834346845992 %)
[2025-10-12 14:31:45] 2025-10-12 18:30:57,737 | INFO     | sum of square deviations: 1270051720.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,738 | INFO     | sum of deviations: -19251009855.500004
[2025-10-12 14:31:45] 2025-10-12 18:30:57,738 | INFO     | mean x: 1760288932.5
[2025-10-12 14:31:45] 2025-10-12 18:30:57,738 | INFO     | mean y: 2526046.44375
[2025-10-12 14:31:45] 2025-10-12 18:30:57,738 | INFO     | -- intersect: 26684384001.08286
[2025-10-12 14:31:45] 2025-10-12 18:30:57,739 | INFO     | intersect: 26684384001.08286
[2025-10-12 14:31:45] 2025-10-12 18:30:57,739 | INFO     | chi2: 0.04454129444567867
[2025-10-12 14:31:45] 2025-10-12 18:30:57,739 | INFO     | current chi2=0.04454129444567867 (change=0.38539734819897514 %)
[2025-10-12 14:31:45] 2025-10-12 18:30:57,739 | INFO     | left removable region: 30
[2025-10-12 14:31:45] 2025-10-12 18:30:57,739 | INFO     | sum of square deviations: 832722590.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,740 | INFO     | sum of deviations: -11998468932.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,740 | INFO     | mean x: 1760289207.0
[2025-10-12 14:31:45] 2025-10-12 18:30:57,740 | INFO     | mean y: 2517008.35971223
[2025-10-12 14:31:45] 2025-10-12 18:30:57,740 | INFO     | -- intersect: 25366036162.468906
[2025-10-12 14:31:45] 2025-10-12 18:30:57,740 | INFO     | intersect: 25366036162.468906
[2025-10-12 14:31:45] 2025-10-12 18:30:57,740 | INFO     | chi2: 0.039890594052666824
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | -- intersect: 25366036162.468906
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | current memory leak: -14.41 B/s (using 139 data points, chi2=0.04)
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | could have reported an average CPU frequency of 2582 MHz (9 samples)
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | ..............................
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | . Timing measurements:
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | . get job = 0 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,741 | INFO     | . initial setup = 2 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,742 | INFO     | . payload setup = 4 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,742 | INFO     | . stage-in = 0 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,742 | INFO     | . payload execution = 10679 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,742 | INFO     | . stage-out = 1 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,742 | INFO     | . log creation = 0 s
[2025-10-12 14:31:45] 2025-10-12 18:30:57,742 | INFO     | ..............................
[2025-10-12 14:31:45] 2025-10-12 18:30:58,259 | INFO     | 
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | job summary report
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | --------------------------------------------------
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | PanDA job id: 6839928205
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | task id: 46676269
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | errors: (none)
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | pilot state: finished 
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | transexitcode: 0
[2025-10-12 14:31:45] 2025-10-12 18:30:58,260 | INFO     | exeerrorcode: 0
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | exeerrordiag: 
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | exitcode: 0
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | exitmsg: OK
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | cpuconsumptiontime: 80313 s
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | nevents: 400
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | neventsw: 0
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | pid: 4202
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | pgrp: 4202
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | corecount: 8
[2025-10-12 14:31:45] 2025-10-12 18:30:58,261 | INFO     | event service: False
[2025-10-12 14:31:45] 2025-10-12 18:30:58,262 | INFO     | sizes: {0: 2348743, 1: 2348885, 4: 2349147, 12: 2349175, 10687: 2377889, 10688: 2377888, 10689: 2387070, 10693: 2387126, 10700: 2387384}
[2025-10-12 14:31:45] 2025-10-12 18:30:58,262 | INFO     | --------------------------------------------------
[2025-10-12 14:31:45] 2025-10-12 18:30:58,262 | INFO     | 
[2025-10-12 14:31:45] 2025-10-12 18:30:58,262 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 14:31:45] 2025-10-12 18:30:58,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:31:45] 2025-10-12 18:30:58,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:31:45] 2025-10-12 18:30:58,279 | INFO     | job 6839928205 has completed (purged errors)
[2025-10-12 14:31:45] 2025-10-12 18:30:58,280 | INFO     | overall cleanup function is called
[2025-10-12 14:31:45] 2025-10-12 18:30:59,283 | INFO     | --- collectZombieJob: --- 10, [4202]
[2025-10-12 14:31:45] 2025-10-12 18:30:59,284 | INFO     | zombie collector waiting for pid 4202
[2025-10-12 14:31:45] 2025-10-12 18:30:59,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:31:45] 2025-10-12 18:30:59,284 | INFO     | collected zombie processes
[2025-10-12 14:31:45] 2025-10-12 18:30:59,284 | INFO     | will attempt to kill all subprocesses of pid=4202
[2025-10-12 14:31:45] 2025-10-12 18:30:59,460 | INFO     | process IDs to be killed: [4202] (in reverse order)
[2025-10-12 14:31:45] 2025-10-12 18:30:59,512 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:31:45] 2025-10-12 18:30:59,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:31:45] 2025-10-12 18:30:59,516 | INFO     | did not find any defunct processes belonging to 4202
[2025-10-12 14:31:45] 2025-10-12 18:30:59,518 | INFO     | did not find any defunct processes belonging to 4202
[2025-10-12 14:31:45] 2025-10-12 18:30:59,518 | INFO     | ready for new job
[2025-10-12 14:31:45] 2025-10-12 18:30:59,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:31:45] 2025-10-12 18:30:59,520 | INFO     | ***************************************
[2025-10-12 14:31:45] 2025-10-12 18:30:59,520 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:31:45] 2025-10-12 18:30:59,520 | INFO     | ***************************************
[2025-10-12 14:31:45] 2025-10-12 18:30:59,520 | INFO     | 
[2025-10-12 14:31:45] 2025-10-12 18:30:59,521 | INFO     | architecture information:
[2025-10-12 14:31:45] 2025-10-12 18:30:59,521 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:31:45] 2025-10-12 18:30:59,538 | INFO     | cat /etc/os-release:
[2025-10-12 14:31:45] NAME="CentOS Linux"
[2025-10-12 14:31:45] VERSION="7 (Core)"
[2025-10-12 14:31:45] ID="centos"
[2025-10-12 14:31:45] ID_LIKE="rhel fedora"
[2025-10-12 14:31:45] VERSION_ID="7"
[2025-10-12 14:31:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:31:45] ANSI_COLOR="0;31"
[2025-10-12 14:31:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:31:45] HOME_URL="https://www.centos.org/"
[2025-10-12 14:31:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:31:45] 
[2025-10-12 14:31:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:31:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:31:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:31:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:31:45] 
[2025-10-12 14:31:45] 2025-10-12 18:30:59,538 | INFO     | ***************************************
[2025-10-12 14:31:45] 2025-10-12 18:31:00,041 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 14:31:45] 2025-10-12 18:31:00,055 | INFO     | sufficient remaining disk space (28158459904 B)
[2025-10-12 14:31:45] 2025-10-12 18:31:00,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:31:45] 2025-10-12 18:31:00,056 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:31:45] 2025-10-12 18:31:00,056 | INFO     | update_server=False
[2025-10-12 14:31:45] 2025-10-12 18:31:00,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:31:45] 2025-10-12 18:31:00,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:31:45] 2025-10-12 18:31:00,454 | INFO     | all job control threads have been joined
[2025-10-12 14:31:45] 2025-10-12 18:31:00,459 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:31:45] 2025-10-12 18:31:00,460 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:31:45] 2025-10-12 18:31:00,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:31:45] 2025-10-12 18:31:00,461 | INFO     | will abort loop
[2025-10-12 14:31:45] 2025-10-12 18:31:01,039 | INFO     | all payload control threads have been joined
[2025-10-12 14:31:45] 2025-10-12 18:31:01,063 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,140 | INFO     | all data control threads have been joined
[2025-10-12 14:31:45] 2025-10-12 18:31:01,316 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,459 | INFO     | [job] control thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,467 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:31:45] 2025-10-12 18:31:01,864 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,876 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:01,900 | INFO     | [job] validate thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,015 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,045 | INFO     | [payload] control thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,146 | INFO     | [data] control thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,258 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,407 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,647 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:02,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:31:45] 2025-10-12 18:31:03,881 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:05,500 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:31:45] 2025-10-12 18:31:30,687 | INFO     | PID=29286 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:31:45] 2025-10-12 18:31:30,688 | INFO     | .. there are 3 such processes running
[2025-10-12 14:31:45] 2025-10-12 18:31:30,689 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:31:45] 2025-10-12 18:31:30,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:31:45] 2025-10-12 18:31:30,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:31:45] 2025-10-12 18:31:39,422 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:31:45] 2025-10-12 18:31:40,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139892099589952)>', '<ExcThread(monitor, started 139891446904576)>']
[2025-10-12 14:31:45] 2025-10-12 18:31:40,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:31:45] 2025-10-12 18:31:40,742 | INFO     | [monitor] control thread has ended
[2025-10-12 14:31:45] 2025-10-12 18:31:45,430 | INFO     | all workflow threads have been joined
[2025-10-12 14:31:45] 2025-10-12 18:31:45,431 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:31:45] 2025-10-12 18:31:45,431 | INFO     | traces error code: 0
[2025-10-12 14:31:45] 2025-10-12 18:31:45,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:31:45] 2025-10-12 18:31:45,513 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:31:45] 2025-10-12 18:31:45,516 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:31:45] 2025-10-12 18:31:45,518 [wrapper] pilotpid: 29286
[2025-10-12 14:31:45] 2025-10-12 18:31:45,520 [wrapper] Pilot exit status: 0
[2025-10-12 14:31:45] 2025-10-12 18:31:45,529 [wrapper] pandaids: 6839928205
[2025-10-12 14:31:45] 2025-10-12 18:31:45,559 [wrapper] cleanup supervisor_pilot  4037 29287
[2025-10-12 14:31:45] 2025-10-12 18:31:45,561 [wrapper] Test setup, not cleaning
[2025-10-12 14:31:45] 2025-10-12 18:31:45,564 [wrapper] apfmon messages muted
[2025-10-12 14:31:45] 2025-10-12 18:31:45,566 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:31:45] 2025-10-12 18:31:45,568 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:31:45]  *** Error codes and diagnostics ***
[2025-10-12 14:31:45]     "exeErrorCode": 0,
[2025-10-12 14:31:45]     "exeErrorDiag": "",
[2025-10-12 14:31:45]     "pilotErrorCode": 0,
[2025-10-12 14:31:45]     "pilotErrorDiag": "",
[2025-10-12 14:31:45]  *** Listing of results directory ***
[2025-10-12 14:31:45] total 410040
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:54 pilot3.tar.gz
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:05 queuedata.json
[2025-10-12 14:31:45] -rwx------ 1 boincer umatlas     36292 Oct 12 08:06 runpilot2-wrapper.sh
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:31:45] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:32 run_atlas
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:32 job.xml
[2025-10-12 14:31:45] -rw-r--r-- 2 boincer umatlas 221723457 Oct 12 11:32 EVNT.46676267._003720.pool.root.1
[2025-10-12 14:31:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:32 start_atlas.sh
[2025-10-12 14:31:45] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:32 shared
[2025-10-12 14:31:45] -rw-r--r-- 2 boincer umatlas    569685 Oct 12 11:32 input.tar.gz
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:32 boinc_lockfile
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:32 pandaJob.out
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas    975528 Oct 12 11:32 agis_schedconf.cvmfs.json
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas   1560580 Oct 12 11:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:31:45] drwx------ 5 boincer umatlas      4096 Oct 12 11:32 pilot3
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas 190419316 Oct 12 14:30 HITS.46676269._077644.pool.root.1
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas      1055 Oct 12 14:30 memory_monitor_summary.json
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas       530 Oct 12 14:30 boinc_task_state.xml
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas    417341 Oct 12 14:30 log.46676269._077644.job.log.tgz.1
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas      7863 Oct 12 14:30 heartbeat.json
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 14:31 init_data.xml
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas        95 Oct 12 14:31 pilot_heartbeat.json
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:31 boinc_mmap_file
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas        28 Oct 12 14:31 wrapper_checkpoint.txt
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas      5007 Oct 12 14:31 pilotlog.txt
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas   1498416 Oct 12 14:31 log.46676269._077644.job.log.1
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas       357 Oct 12 14:31 output.list
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:31 runtime_log
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas   1935360 Oct 12 14:31 result.tar.gz
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 14:31 runtime_log.err
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas       662 Oct 12 14:31 iDHNDm109R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3pTMDmxjJLym.diag
[2025-10-12 14:31:45] -rw-r--r-- 1 boincer umatlas     20910 Oct 12 14:31 stderr.txt
[2025-10-12 14:31:45] HITS file was successfully produced:
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas 190419316 Oct 12 14:30 shared/HITS.pool.root.1
[2025-10-12 14:31:45]  *** Contents of shared directory: ***
[2025-10-12 14:31:45] total 404964
[2025-10-12 14:31:45] -rw-r--r-- 2 boincer umatlas 221723457 Oct 12 11:32 ATLAS.root_0
[2025-10-12 14:31:45] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:32 start_atlas.sh
[2025-10-12 14:31:45] -rw-r--r-- 2 boincer umatlas    569685 Oct 12 11:32 input.tar.gz
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas 190419316 Oct 12 14:30 HITS.pool.root.1
[2025-10-12 14:31:45] -rw------- 1 boincer umatlas   1935360 Oct 12 14:31 result.tar.gz
14:31:47 (25548): run_atlas exited; CPU time 80451.178470
14:31:47 (25548): called boinc_finish(0)

</stderr_txt>
]]>

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