Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:26:29 (22253): wrapper (7.7.26015): starting
11:26:29 (22253): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:26:29] Arguments: --nthreads 12
[2025-10-12 11:26:29] Threads: 12
[2025-10-12 11:26:29] Checking for CVMFS
[2025-10-12 11:26:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:26:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:26:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:26:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:26:29] 2.11.2.0 2925 223060 101332 151625 0 56 16312195 20275200 1 130560 1 110196112 99.984 13307203 12636 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:26:29] CVMFS is ok
[2025-10-12 11:26:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:26:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:26:29] Further information can be found at the LHC@home message board.
[2025-10-12 11:26:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:26:29] Checking for apptainer binary...
[2025-10-12 11:26:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:26:29] Running /usr/bin/apptainer --version
[2025-10-12 11:26:29] apptainer version 1.3.2-1.el7
[2025-10-12 11:26:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:26:31] c-205-9.aglt2.org
[2025-10-12 11:26:31] apptainer works
[2025-10-12 11:26:31] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:26:31] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:26:31] Starting ATLAS job with PandaID=6839928276
[2025-10-12 11:26:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:41:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:41:14]  mtime=0
[2025-10-12 12:41:14]  protocol_id=None
[2025-10-12 12:41:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 12:41:14]  replicas=None
[2025-10-12 12:41:14]  scope=mc23_13p6TeV
[2025-10-12 12:41:14]  status=None
[2025-10-12 12:41:14]  status_code=0
[2025-10-12 12:41:14]  storage_token=
[2025-10-12 12:41:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839928276/log.46676269._077715.job.log.tgz.1
[2025-10-12 12:41:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/0f/log.46676269._077715.job.log.tgz.1
[2025-10-12 12:41:14]  workdir=None
[2025-10-12 12:41:14] ]
[2025-10-12 12:41:14] 2025-10-12 16:40:36,724 | INFO     | transferring file log.46676269._077715.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839928276/log.46676269._077715.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 12:41:14] 2025-10-12 16:40:36,725 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839928276/log.46676269._077715.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077715.job
[2025-10-12 12:41:14] 2025-10-12 16:40:36,747 | INFO     | adding to output.list: log.46676269._077715.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/0f/log.46676269._077715.job.log.tg
[2025-10-12 12:41:14] 2025-10-12 16:40:36,748 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:41:14] 2025-10-12 16:40:36,748 | INFO     | summary of transferred files:
[2025-10-12 12:41:14] 2025-10-12 16:40:36,748 | INFO     |  -- lfn=log.46676269._077715.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:41:14] 2025-10-12 16:40:36,748 | INFO     | stage-out finished correctly
[2025-10-12 12:41:14] 2025-10-12 16:40:36,833 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:41:14] 2025-10-12 16:40:36,912 | INFO     | job 6839928276 has state=finished
[2025-10-12 12:41:14] 2025-10-12 16:40:36,912 | INFO     | preparing for final server update for job 6839928276 in state='finished'
[2025-10-12 12:41:14] 2025-10-12 16:40:36,913 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:41:14] 2025-10-12 16:40:36,913 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:41:14] 2025-10-12 16:40:36,913 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:41:14] 2025-10-12 16:40:36,913 | INFO     | job 6839928276 has finished - writing final server update
[2025-10-12 12:41:14] 2025-10-12 16:40:36,914 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:41:14] 2025-10-12 16:40:36,915 | INFO     | executing command: lscpu
[2025-10-12 12:41:14] 2025-10-12 16:40:36,940 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:41:14] 2025-10-12 16:40:37,186 | INFO     | time since job start (4432s) is within the limit (172800.0s)
[2025-10-12 12:41:14] 2025-10-12 16:40:37,484 | INFO     | monitor loop #330: job 0:6839928276 is in state 'finished'
[2025-10-12 12:41:14] 2025-10-12 16:40:37,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:41:14] 2025-10-12 16:40:39,192 | INFO     | time since job start (4434s) is within the limit (172800.0s)
[2025-10-12 12:41:14] 2025-10-12 16:40:39,987 | INFO     | monitor loop #331: job 0:6839928276 is in state 'finished'
[2025-10-12 12:41:14] 2025-10-12 16:40:39,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,197 | INFO     | time since job start (4436s) is within the limit (172800.0s)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,834 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 12:41:14] 2025-10-12 16:40:41,838 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 12:41:14] 2025-10-12 16:40:41,840 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928276/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,840 | INFO     | extracted standard info from prmon json
[2025-10-12 12:41:14] 2025-10-12 16:40:41,840 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:41:14] 2025-10-12 16:40:41,841 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:41:14] 2025-10-12 16:40:41,841 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:41:14] 2025-10-12 16:40:41,841 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:41:14] 2025-10-12 16:40:41,842 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:41:14] 2025-10-12 16:40:41,843 | INFO     | sum of square deviations: 89127252.5
[2025-10-12 12:41:14] 2025-10-12 16:40:41,843 | INFO     | sum of deviations: -1731597270.5
[2025-10-12 12:41:14] 2025-10-12 16:40:41,843 | INFO     | mean x: 1760285121.5
[2025-10-12 12:41:14] 2025-10-12 16:40:41,843 | INFO     | mean y: 2926029.4696969697
[2025-10-12 12:41:14] 2025-10-12 16:40:41,843 | INFO     | -- intersect: 34202397304.44433
[2025-10-12 12:41:14] 2025-10-12 16:40:41,843 | INFO     | intersect: 34202397304.44433
[2025-10-12 12:41:14] 2025-10-12 16:40:41,844 | INFO     | chi2: 0.09772569142308887
[2025-10-12 12:41:14] 2025-10-12 16:40:41,844 | INFO     | -- intersect: 34202397304.44433
[2025-10-12 12:41:14] 2025-10-12 16:40:41,844 | INFO     | current memory leak: -19.43 B/s (using 66 data points, chi2=0.10)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,844 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,844 | INFO     | ..............................
[2025-10-12 12:41:14] 2025-10-12 16:40:41,844 | INFO     | . Timing measurements:
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . get job = 0 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . initial setup = 2 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . payload setup = 7 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . stage-in = 0 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . payload execution = 4402 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . stage-out = 0 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | . log creation = 0 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,845 | INFO     | ..............................
[2025-10-12 12:41:14] 2025-10-12 16:40:41,928 | INFO     | 
[2025-10-12 12:41:14] 2025-10-12 16:40:41,929 | INFO     | job summary report
[2025-10-12 12:41:14] 2025-10-12 16:40:41,929 | INFO     | --------------------------------------------------
[2025-10-12 12:41:14] 2025-10-12 16:40:41,929 | INFO     | PanDA job id: 6839928276
[2025-10-12 12:41:14] 2025-10-12 16:40:41,929 | INFO     | task id: 46676269
[2025-10-12 12:41:14] 2025-10-12 16:40:41,930 | INFO     | errors: (none)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:41:14] 2025-10-12 16:40:41,930 | INFO     | pilot state: finished 
[2025-10-12 12:41:14] 2025-10-12 16:40:41,930 | INFO     | transexitcode: 0
[2025-10-12 12:41:14] 2025-10-12 16:40:41,930 | INFO     | exeerrorcode: 0
[2025-10-12 12:41:14] 2025-10-12 16:40:41,930 | INFO     | exeerrordiag: 
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | exitcode: 0
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | exitmsg: OK
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | cpuconsumptiontime: 47166 s
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | nevents: 400
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | neventsw: 0
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | pid: 1641
[2025-10-12 12:41:14] 2025-10-12 16:40:41,931 | INFO     | pgrp: 1641
[2025-10-12 12:41:14] 2025-10-12 16:40:41,932 | INFO     | corecount: 12
[2025-10-12 12:41:14] 2025-10-12 16:40:41,932 | INFO     | event service: False
[2025-10-12 12:41:14] 2025-10-12 16:40:41,932 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 4413: 2375222, 4415: 2384404, 4420: 2384542}
[2025-10-12 12:41:14] 2025-10-12 16:40:41,932 | INFO     | --------------------------------------------------
[2025-10-12 12:41:14] 2025-10-12 16:40:41,932 | INFO     | 
[2025-10-12 12:41:14] 2025-10-12 16:40:41,932 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 12:41:14] 2025-10-12 16:40:41,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,956 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,956 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,957 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,959 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,959 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:41:14] 2025-10-12 16:40:41,960 | INFO     | job 6839928276 has completed (purged errors)
[2025-10-12 12:41:14] 2025-10-12 16:40:41,960 | INFO     | overall cleanup function is called
[2025-10-12 12:41:14] 2025-10-12 16:40:42,964 | INFO     | --- collectZombieJob: --- 10, [1641]
[2025-10-12 12:41:14] 2025-10-12 16:40:42,964 | INFO     | zombie collector waiting for pid 1641
[2025-10-12 12:41:14] 2025-10-12 16:40:42,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:41:14] 2025-10-12 16:40:42,964 | INFO     | collected zombie processes
[2025-10-12 12:41:14] 2025-10-12 16:40:42,965 | INFO     | will attempt to kill all subprocesses of pid=1641
[2025-10-12 12:41:14] 2025-10-12 16:40:43,053 | INFO     | process IDs to be killed: [1641] (in reverse order)
[2025-10-12 12:41:14] 2025-10-12 16:40:43,106 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:41:14] 2025-10-12 16:40:43,107 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:41:14] 2025-10-12 16:40:43,110 | INFO     | did not find any defunct processes belonging to 1641
[2025-10-12 12:41:14] 2025-10-12 16:40:43,112 | INFO     | did not find any defunct processes belonging to 1641
[2025-10-12 12:41:14] 2025-10-12 16:40:43,112 | INFO     | ready for new job
[2025-10-12 12:41:14] 2025-10-12 16:40:43,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:41:14] 2025-10-12 16:40:43,113 | INFO     | ***************************************
[2025-10-12 12:41:14] 2025-10-12 16:40:43,114 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:41:14] 2025-10-12 16:40:43,114 | INFO     | ***************************************
[2025-10-12 12:41:14] 2025-10-12 16:40:43,114 | INFO     | 
[2025-10-12 12:41:14] 2025-10-12 16:40:43,114 | INFO     | architecture information:
[2025-10-12 12:41:14] 2025-10-12 16:40:43,115 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:41:14] 2025-10-12 16:40:43,130 | INFO     | cat /etc/os-release:
[2025-10-12 12:41:14] NAME="CentOS Linux"
[2025-10-12 12:41:14] VERSION="7 (Core)"
[2025-10-12 12:41:14] ID="centos"
[2025-10-12 12:41:14] ID_LIKE="rhel fedora"
[2025-10-12 12:41:14] VERSION_ID="7"
[2025-10-12 12:41:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:41:14] ANSI_COLOR="0;31"
[2025-10-12 12:41:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:41:14] HOME_URL="https://www.centos.org/"
[2025-10-12 12:41:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:41:14] 
[2025-10-12 12:41:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:41:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:41:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:41:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:41:14] 
[2025-10-12 12:41:14] 2025-10-12 16:40:43,130 | INFO     | ***************************************
[2025-10-12 12:41:14] 2025-10-12 16:40:43,633 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 12:41:14] 2025-10-12 16:40:43,650 | INFO     | sufficient remaining disk space (29363273728 B)
[2025-10-12 12:41:14] 2025-10-12 16:40:43,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:41:14] 2025-10-12 16:40:43,651 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:41:14] 2025-10-12 16:40:43,651 | INFO     | update_server=False
[2025-10-12 12:41:14] 2025-10-12 16:40:43,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:41:14] 2025-10-12 16:40:43,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:41:14] 2025-10-12 16:40:43,652 | INFO     | aborting loop
[2025-10-12 12:41:14] 2025-10-12 16:40:43,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:41:14] 2025-10-12 16:40:43,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:41:14] 2025-10-12 16:40:43,696 | INFO     | all job control threads have been joined
[2025-10-12 12:41:14] 2025-10-12 16:40:44,025 | INFO     | all data control threads have been joined
[2025-10-12 12:41:14] 2025-10-12 16:40:44,413 | INFO     | all payload control threads have been joined
[2025-10-12 12:41:14] 2025-10-12 16:40:44,654 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:44,657 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:44,658 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:44,701 | INFO     | [job] control thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:44,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:41:14] 2025-10-12 16:40:45,028 | INFO     | [data] control thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,255 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,323 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,419 | INFO     | [payload] control thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,649 | INFO     | [job] validate thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,655 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,784 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:45,940 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:46,071 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:46,850 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:47,658 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:52,341 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:41:14] 2025-10-12 16:40:54,527 | INFO     | job.realtimelogging is not enabled
[2025-10-12 12:41:14] 2025-10-12 16:40:55,530 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:41:14] 2025-10-12 16:40:57,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771288549184)>', '<ExcThread(monitor, started 139770701272832)>']
[2025-10-12 12:41:14] 2025-10-12 16:41:02,597 | INFO     | all workflow threads have been joined
[2025-10-12 12:41:14] 2025-10-12 16:41:02,615 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:41:14] 2025-10-12 16:41:02,616 | INFO     | traces error code: 0
[2025-10-12 12:41:14] 2025-10-12 16:41:02,616 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:41:14] 2025-10-12 16:41:14,396 | INFO     | PID=27302 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 12:41:14] 2025-10-12 16:41:14,397 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:41:14] 2025-10-12 16:41:14,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:41:14] 2025-10-12 16:41:14,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:41:14] 2025-10-12 16:41:14,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:41:14] 2025-10-12 16:41:14,397 | INFO     | [monitor] control thread has ended
[2025-10-12 12:41:14] 2025-10-12 16:41:14,484 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:41:14] 2025-10-12 16:41:14,488 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:41:14] 2025-10-12 16:41:14,493 [wrapper] pilotpid: 27302
[2025-10-12 12:41:14] 2025-10-12 16:41:14,496 [wrapper] Pilot exit status: 0
[2025-10-12 12:41:14] 2025-10-12 16:41:14,512 [wrapper] pandaids: 6839928276
[2025-10-12 12:41:14] 2025-10-12 16:41:14,554 [wrapper] cleanup supervisor_pilot 14198 27303
[2025-10-12 12:41:14] 2025-10-12 16:41:14,558 [wrapper] Test setup, not cleaning
[2025-10-12 12:41:14] 2025-10-12 16:41:14,563 [wrapper] apfmon messages muted
[2025-10-12 12:41:14] 2025-10-12 16:41:14,567 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:41:14] 2025-10-12 16:41:14,571 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:41:14]  *** Error codes and diagnostics ***
[2025-10-12 12:41:14]     "exeErrorCode": 0,
[2025-10-12 12:41:14]     "exeErrorDiag": "",
[2025-10-12 12:41:14]     "pilotErrorCode": 0,
[2025-10-12 12:41:14]     "pilotErrorDiag": "",
[2025-10-12 12:41:14]  *** Listing of results directory ***
[2025-10-12 12:41:14] total 411324
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:54 pilot3.tar.gz
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:05 queuedata.json
[2025-10-12 12:41:14] -rwx------ 1 boincer umatlas     36292 Oct 12 08:06 runpilot2-wrapper.sh
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:41:14] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:26 run_atlas
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:26 job.xml
[2025-10-12 12:41:14] -rw-r--r-- 2 boincer umatlas 218718124 Oct 12 11:26 EVNT.46676267._003727.pool.root.1
[2025-10-12 12:41:14] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 11:26 input.tar.gz
[2025-10-12 12:41:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:26 start_atlas.sh
[2025-10-12 12:41:14] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:26 shared
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:26 boinc_lockfile
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:26 pandaJob.out
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas    975528 Oct 12 11:26 agis_schedconf.cvmfs.json
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas   1560580 Oct 12 11:26 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:41:14] drwx------ 5 boincer umatlas      4096 Oct 12 11:26 pilot3
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 12:39 init_data.xml
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas 196532139 Oct 12 12:40 HITS.46676269._077715.pool.root.1
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas      1050 Oct 12 12:40 memory_monitor_summary.json
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas       529 Oct 12 12:40 boinc_task_state.xml
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas    382172 Oct 12 12:40 log.46676269._077715.job.log.tgz.1
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas      7855 Oct 12 12:40 heartbeat.json
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas        27 Oct 12 12:40 wrapper_checkpoint.txt
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 12:40 boinc_mmap_file
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas       745 Oct 12 12:41 pilotlog.txt
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas        95 Oct 12 12:41 pilot_heartbeat.json
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas    642508 Oct 12 12:41 log.46676269._077715.job.log.1
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas       357 Oct 12 12:41 output.list
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas       620 Oct 12 12:41 runtime_log
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas   1044480 Oct 12 12:41 result.tar.gz
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 12:41 runtime_log.err
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas       658 Oct 12 12:41 lw3LDmy19R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqhjNDmsTIXam.diag
[2025-10-12 12:41:14] -rw-r--r-- 1 boincer umatlas     21648 Oct 12 12:41 stderr.txt
[2025-10-12 12:41:14] HITS file was successfully produced:
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas 196532139 Oct 12 12:40 shared/HITS.pool.root.1
[2025-10-12 12:41:14]  *** Contents of shared directory: ***
[2025-10-12 12:41:14] total 407120
[2025-10-12 12:41:14] -rw-r--r-- 2 boincer umatlas 218718124 Oct 12 11:26 ATLAS.root_0
[2025-10-12 12:41:14] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 11:26 input.tar.gz
[2025-10-12 12:41:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:26 start_atlas.sh
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas 196532139 Oct 12 12:40 HITS.pool.root.1
[2025-10-12 12:41:14] -rw------- 1 boincer umatlas   1044480 Oct 12 12:41 result.tar.gz
12:41:16 (22253): run_atlas exited; CPU time 47138.813759
12:41:16 (22253): called boinc_finish(0)

</stderr_txt>
]]>

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