Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 14:02:31 (2640): vboxwrapper version 26210
2025-10-13 14:02:31 (2640): BOINC client version: 8.2.4
2025-10-13 14:02:32 (2640): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-13 14:02:32 (2640): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 14:02:32 (2640): Create VM. (boinc_3cd0fa0d964fbb8c, slot#0)
2025-10-13 14:02:33 (2640): Setting Memory Size for VM. (4400MB)
2025-10-13 14:02:33 (2640): Setting CPU Count for VM. (4)
2025-10-13 14:02:34 (2640): Setting Chipset Options for VM.
2025-10-13 14:02:34 (2640): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 14:02:34 (2640): Setting Boot Options for VM.
2025-10-13 14:02:35 (2640): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 14:02:35 (2640): Enabling VM Network Access.
2025-10-13 14:02:35 (2640): Disabling USB Support for VM.
2025-10-13 14:02:35 (2640): Disabling COM Port Support for VM.
2025-10-13 14:02:36 (2640): Disabling LPT Port Support for VM.
2025-10-13 14:02:36 (2640): Disabling Audio Support for VM.
2025-10-13 14:02:36 (2640): Disabling Clipboard Support for VM.
2025-10-13 14:02:36 (2640): Disabling Drag and Drop Support for VM.
2025-10-13 14:02:37 (2640): Adding storage controller(s) to VM.
2025-10-13 14:02:37 (2640): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 14:02:37 (2640): Adding VirtualBox Guest Additions to VM.
2025-10-13 14:02:38 (2640): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 14:02:38 (2640): forwarding host port 4070 to guest port 80
2025-10-13 14:02:38 (2640): Enabling remote desktop for VM.
2025-10-13 14:02:39 (2640): Enabling shared directory for VM.
2025-10-13 14:02:40 (2640): Starting VM using VBoxManage interface. (boinc_3cd0fa0d964fbb8c, slot#0)
2025-10-13 14:02:48 (2640): Successfully started VM. (PID = '12916')
2025-10-13 14:02:48 (2640): Reporting VM Process ID to BOINC.
2025-10-13 14:02:48 (2640): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-13 14:02:48 (2640): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 14:02:48 (2640): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 14:02:48 (2640): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 14:02:48 (2640): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 14:02:48 (2640): Detected: Web Application Enabled (http://localhost:4070)
2025-10-13 14:02:48 (2640): Detected: Remote Desktop Enabled (localhost:4071)
2025-10-13 14:02:48 (2640): Preference change detected
2025-10-13 14:02:48 (2640): Setting CPU throttle for VM. (100%)
2025-10-13 14:02:49 (2640): Setting checkpoint interval to 999 seconds. (Higher value of (Preference: 999 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 14:02:50 (2640): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 14:02:50 (2640): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 14:02:53 (2640): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 14:02:53 (2640): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 14:02:53 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 14:02:59 (2640): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 14:02:59 (2640): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 14:03:10 (2640): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000256 main     Log opened 2025-10-13T14:03:09.043669000Z
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000444 main     OS Product: Linux
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000549 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000617 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000684 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000686 main     Process ID: 1308
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.000687 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 14:03:10 (2640): Guest Log: 00:00:00.002044 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 14:03:10 (2640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 14:03:10 (2640): Guest Log: [INFO] Mounting shared directory
2025-10-13 14:03:10 (2640): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 14:03:14 (2640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 14:03:14 (2640): Guest Log: [INFO] Detected branch: prod
2025-10-13 14:03:15 (2640): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 14:03:15 (2640): Guest Log: Copying input files
2025-10-13 14:03:17 (2640): Guest Log: Copied input files into RunAtlas.
2025-10-13 14:03:17 (2640): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 14:03:17 (2640): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 14:03:17 (2640): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 14:03:17 (2640): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 14:03:20 (2640): Guest Log: 00:00:10.008109 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 750 753 000ns (GuestNow=1 760 357 000 299 799 000 ns GuestLast=1 760 364 189 050 552 000 ns fSetTimeLastLoop=true )
2025-10-13 14:03:26 (2640): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 14:03:27 (2640): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 14:03:27 (2640): Guest Log: 2.6.3.0 1582 0 32208 151660 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 14:03:31 (2640): Guest Log: copied the webapp to /var/www
2025-10-13 14:03:31 (2640): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 14:03:31 (2640): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 14:03:31 (2640): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 14:03:31 (2640): Guest Log:  *** Starting ATLAS job. (PandaID=6839928399 taskID=46676269) ***
2025-10-13 15:43:43 (2640): Status Report: Elapsed Time: '6000.000000'
2025-10-13 15:43:43 (2640): Status Report: CPU Time: '20419.500000'
2025-10-13 17:26:41 (2640): Status Report: Elapsed Time: '12000.287453'
2025-10-13 17:26:41 (2640): Status Report: CPU Time: '44458.000000'
2025-10-13 19:07:59 (2640): Status Report: Elapsed Time: '18000.619175'
2025-10-13 19:07:59 (2640): Status Report: CPU Time: '68230.109375'
2025-10-13 20:49:14 (2640): Status Report: Elapsed Time: '24000.619175'
2025-10-13 20:49:14 (2640): Status Report: CPU Time: '91999.796875'
2025-10-13 21:15:28 (2640): Guest Log:  *** Job finished ***
2025-10-13 21:15:28 (2640): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:07,669 | INFO     | all workflow threads have been joined
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:07,669 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:07,670 | INFO     | traces error code: 0
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:07,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,861 | INFO     | PID=5979 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,862 | INFO     | found 0 job(s) in 20 queues
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,862 | INFO     | [monitor] control thread has ended
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,985 [wrapper] ==== pilot stdout END ====
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:22,991 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,005 [wrapper] pilotpid: 5979
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,013 [wrapper] Pilot exit status: 0
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,488 [wrapper] pandaids: 6839928399
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,539 [wrapper] cleanup supervisor_pilot 30594 5980
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,551 [wrapper] Test setup, not cleaning
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,559 [wrapper] apfmon messages muted
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,568 [wrapper] ==== wrapper stdout END ====
2025-10-13 21:15:28 (2640): Guest Log: 2025-10-13 19:15:23,574 [wrapper] ==== wrapper stderr END ====
2025-10-13 21:15:28 (2640): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 21:15:28 (2640): Guest Log:     "exeErrorCode": 0,
2025-10-13 21:15:28 (2640): Guest Log:     "exeErrorDiag": "",
2025-10-13 21:15:28 (2640): Guest Log:     "pilotErrorCode": 0,
2025-10-13 21:15:28 (2640): Guest Log:     "pilotErrorDiag": "",
2025-10-13 21:15:28 (2640): Guest Log:  *** Listing of results directory ***
2025-10-13 21:15:28 (2640): Guest Log: total 204516
2025-10-13 21:15:28 (2640): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 12:10 pilot3.tar.gz
2025-10-13 21:15:28 (2640): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 12:13 queuedata.json
2025-10-13 21:15:28 (2640): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 12:13 runpilot2-wrapper.sh
2025-10-13 21:15:28 (2640): Guest Log: -rwxr-xr-x. 1 atlas atlas      8701 Oct 13 12:03 init_data.xml
2025-10-13 21:15:28 (2640): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 13 12:03 input.tar.gz
2025-10-13 21:15:28 (2640): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 12:03 start_atlas.sh
2025-10-13 21:15:28 (2640): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 12:03 EVNT.46676267._003745.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 21:15:28 (2640): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 13 12:03 pandaJob.out
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas    972497 Oct 13 12:05 agis_schedconf.cvmfs.json
2025-10-13 21:15:28 (2640): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 12:05 pilot3
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas 197748345 Oct 13 19:13 HITS.46676269._077838.pool.root.1
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas      1029 Oct 13 19:14 memory_monitor_summary.json
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 19:14 agis_ddmendpoints.agis.ALL.json
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas    546601 Oct 13 19:14 log.46676269._077838.job.log.tgz.1
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas      7822 Oct 13 19:14 heartbeat.json
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 19:14 pilot_heartbeat.json
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas       744 Oct 13 19:15 pilotlog.txt
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas   3377701 Oct 13 19:15 log.46676269._077838.job.log.1
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 19:15 output.list
2025-10-13 21:15:28 (2640): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 19:15 runtime_log
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas   3942400 Oct 13 19:15 result.tar.gz
2025-10-13 21:15:28 (2640): Guest Log: -rw-r--r--. 1 atlas atlas      8649 Oct 13 19:15 runtime_log.err
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas       661 Oct 13 19:15 MBgMDmC89R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJsTMDmvk8mHm.diag
2025-10-13 21:15:28 (2640): Guest Log: Looking for outputfile HITS.46676269._077838.pool.root.1
2025-10-13 21:15:28 (2640): Guest Log: HITS file was successfully produced
2025-10-13 21:15:28 (2640): Guest Log: -rw-------. 1 atlas atlas 197748345 Oct 13 19:13 /home/atlas/RunAtlas/HITS.46676269._077838.pool.root.1
2025-10-13 21:15:30 (2640): Guest Log: Successfully finished the ATLAS job!
2025-10-13 21:15:30 (2640): Guest Log: Copying the results back to the shared directory!
2025-10-13 21:15:30 (2640): Guest Log:  *** Contents of shared directory: ***
2025-10-13 21:15:30 (2640): Guest Log: total 414508
2025-10-13 21:15:30 (2640): Guest Log: -rwxrwxrwx. 1 root root 222156328 Oct 13 12:02 ATLAS.root_0
2025-10-13 21:15:30 (2640): Guest Log: -rwxrwxrwx. 1 root root 197748345 Oct 13 19:15 HITS.pool.root.1
2025-10-13 21:15:30 (2640): Guest Log: -rwxrwxrwx. 1 root root      8701 Oct 13 12:02 init_data.xml
2025-10-13 21:15:30 (2640): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 12 15:25 input.tar.gz
2025-10-13 21:15:30 (2640): Guest Log: -rwxrwxrwx. 1 root root   3942400 Oct 13 19:15 result.tar.gz
2025-10-13 21:15:30 (2640): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 15:25 start_atlas.sh
2025-10-13 21:15:30 (2640): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 21:15:30 (2640): VM Completion File Detected.
2025-10-13 21:15:30 (2640): Powering off VM.
2025-10-13 21:15:31 (2640): Successfully stopped VM.
2025-10-13 21:15:31 (2640): Deregistering VM. (boinc_3cd0fa0d964fbb8c, slot#0)
2025-10-13 21:15:31 (2640): Removing network bandwidth throttle group from VM.
2025-10-13 21:15:31 (2640): Removing VM from VirtualBox.
2025-10-13 21:15:36 (2640): called boinc_finish(0)

</stderr_txt>
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