Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:30:40 (764209): wrapper (7.7.26015): starting
22:30:40 (764209): wrapper: running run_atlas (--nthreads 12)
[2025-10-15 22:30:40] Arguments: --nthreads 12
[2025-10-15 22:30:40] Threads: 12
[2025-10-15 22:30:40] Checking for CVMFS
[2025-10-15 22:30:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-15 22:30:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-15 22:30:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-15 22:30:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-15 22:30:40] 2.13.2.0 3610 1445 49144 151747 0 57 2683783 4096000 0 130560 0 1557063 99.993 50742 253 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-15 22:30:40] CVMFS is ok
[2025-10-15 22:30:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-15 22:30:40] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-15 22:30:40] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-15 22:30:40] Further information can be found at the LHC@home message board.
[2025-10-15 22:30:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-15 22:30:40] Checking for apptainer binary...
[2025-10-15 22:30:40] apptainer is not installed, using version from CVMFS
[2025-10-15 22:30:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-15 22:30:40] ws24
[2025-10-15 22:30:40] apptainer works
[2025-10-15 22:30:40] Set ATHENA_PROC_NUMBER=12
[2025-10-15 22:30:40] Set ATHENA_CORE_NUMBER=12
[2025-10-15 22:30:40] Starting ATLAS job with PandaID=6839821828
[2025-10-15 22:30:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-15 23:36:12]  *** The last 200 lines of the pilot log: ***
[2025-10-15 23:36:12]  protocol_id=None
[2025-10-15 23:36:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-15 23:36:12]  replicas=None
[2025-10-15 23:36:12]  scope=mc23_13p6TeV
[2025-10-15 23:36:12]  status=None
[2025-10-15 23:36:12]  status_code=0
[2025-10-15 23:36:12]  storage_token=
[2025-10-15 23:36:12]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6839821828/log.46676269._075149.job.log.tgz.1
[2025-10-15 23:36:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/cc/log.46676269._075149.job.log.tgz.1
[2025-10-15 23:36:12]  workdir=None
[2025-10-15 23:36:12] ]
[2025-10-15 23:36:12] 2025-10-15 21:35:34,105 | INFO     | transferring file log.46676269._075149.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6839821828/log.46676269._075149.job.log.tgz.1 to /var/lib/boinc
[2025-10-15 23:36:12] 2025-10-15 21:35:34,105 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6839821828/log.46676269._075149.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-15 23:36:12] 2025-10-15 21:35:34,125 | INFO     | adding to output.list: log.46676269._075149.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/cc/log.46676269._075149.job.log.tg
[2025-10-15 23:36:12] 2025-10-15 21:35:34,125 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-15 23:36:12] 2025-10-15 21:35:34,125 | INFO     | summary of transferred files:
[2025-10-15 23:36:12] 2025-10-15 21:35:34,125 | INFO     |  -- lfn=log.46676269._075149.job.log.tgz.1, status_code=0, status=transferred
[2025-10-15 23:36:12] 2025-10-15 21:35:34,125 | INFO     | stage-out finished correctly
[2025-10-15 23:36:12] 2025-10-15 21:35:34,931 | INFO     | time since job start (3880s) is within the limit (172800.0s)
[2025-10-15 23:36:12] 2025-10-15 21:35:35,340 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-15 23:36:12] 2025-10-15 21:35:35,673 | INFO     | monitor loop #291: job 0:6839821828 is in state 'finished'
[2025-10-15 23:36:12] 2025-10-15 21:35:35,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-15 23:36:12] 2025-10-15 21:35:35,900 | INFO     | job 6839821828 has state=finished
[2025-10-15 23:36:12] 2025-10-15 21:35:35,900 | INFO     | preparing for final server update for job 6839821828 in state='finished'
[2025-10-15 23:36:12] 2025-10-15 21:35:35,901 | INFO     | this job has now completed (state=finished)
[2025-10-15 23:36:12] 2025-10-15 21:35:35,901 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-15 23:36:12] 2025-10-15 21:35:35,901 | INFO     | log transfer has been attempted: DONE
[2025-10-15 23:36:12] 2025-10-15 21:35:35,901 | INFO     | job 6839821828 has finished - writing final server update
[2025-10-15 23:36:12] 2025-10-15 21:35:35,901 | INFO     | total number of processed events: 400 (read)
[2025-10-15 23:36:12] 2025-10-15 21:35:35,902 | INFO     | executing command: lscpu
[2025-10-15 23:36:12] 2025-10-15 21:35:35,924 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-15 23:36:12] 2025-10-15 21:35:36,936 | INFO     | time since job start (3882s) is within the limit (172800.0s)
[2025-10-15 23:36:12] 2025-10-15 21:35:38,176 | INFO     | monitor loop #292: job 0:6839821828 is in state 'finished'
[2025-10-15 23:36:12] 2025-10-15 21:35:38,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-15 23:36:12] 2025-10-15 21:35:38,941 | INFO     | time since job start (3884s) is within the limit (172800.0s)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,430 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-15 23:36:12] 2025-10-15 21:35:39,432 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2742.331625
[2025-10-15 23:36:12] 2025-10-15 21:35:39,435 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839821828/memory_monitor_summary.json (trf name=prmon)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,435 | INFO     | extracted standard info from prmon json
[2025-10-15 23:36:12] 2025-10-15 21:35:39,435 | INFO     | extracted standard memory fields from prmon json
[2025-10-15 23:36:12] 2025-10-15 21:35:39,435 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-15 23:36:12] 2025-10-15 21:35:39,436 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-15 23:36:12] 2025-10-15 21:35:39,436 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | fitting pss+swap vs Time
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | sum of square deviations: 57407588.0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | sum of deviations: -8205189727.000002
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | mean x: 1760562290.0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | mean y: 2990040.1403508773
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | -- intersect: 251637802073.20465
[2025-10-15 23:36:12] 2025-10-15 21:35:39,437 | INFO     | intersect: 251637802073.20465
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | chi2: 0.09751617461619555
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | -- intersect: 251637802073.20465
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | current memory leak: -142.93 B/s (using 57 data points, chi2=0.10)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | could have reported an average CPU frequency of 2526 MHz (6 samples)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | ..............................
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | . Timing measurements:
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | . get job = 0 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | . initial setup = 6 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | . payload setup = 4 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | . stage-in = 0 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,438 | INFO     | . payload execution = 3855 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,439 | INFO     | . stage-out = 0 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,439 | INFO     | . log creation = 0 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,439 | INFO     | ..............................
[2025-10-15 23:36:12] 2025-10-15 21:35:39,508 | INFO     | 
[2025-10-15 23:36:12] 2025-10-15 21:35:39,508 | INFO     | job summary report
[2025-10-15 23:36:12] 2025-10-15 21:35:39,508 | INFO     | --------------------------------------------------
[2025-10-15 23:36:12] 2025-10-15 21:35:39,508 | INFO     | PanDA job id: 6839821828
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | task id: 46676269
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | errors: (none)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | pilot state: finished 
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | transexitcode: 0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | exeerrorcode: 0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | exeerrordiag: 
[2025-10-15 23:36:12] 2025-10-15 21:35:39,509 | INFO     | exitcode: 0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | exitmsg: OK
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | cpuconsumptiontime: 40440 s
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | nevents: 400
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | neventsw: 0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | pid: 774557
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | pgrp: 774557
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | corecount: 12
[2025-10-15 23:36:12] 2025-10-15 21:35:39,510 | INFO     | event service: False
[2025-10-15 23:36:12] 2025-10-15 21:35:39,511 | INFO     | sizes: {0: 2348877, 4: 2349139, 11: 2349167, 3864: 2375070, 3865: 2384082, 3866: 2384138, 3870: 2384460}
[2025-10-15 23:36:12] 2025-10-15 21:35:39,511 | INFO     | --------------------------------------------------
[2025-10-15 23:36:12] 2025-10-15 21:35:39,511 | INFO     | 
[2025-10-15 23:36:12] 2025-10-15 21:35:39,511 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | job 6839821828 has completed (purged errors)
[2025-10-15 23:36:12] 2025-10-15 21:35:39,540 | INFO     | overall cleanup function is called
[2025-10-15 23:36:12] 2025-10-15 21:35:40,097 | INFO     | PID=767981 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 23:36:12] 2025-10-15 21:35:40,548 | INFO     | --- collectZombieJob: --- 10, [774557]
[2025-10-15 23:36:12] 2025-10-15 21:35:40,548 | INFO     | zombie collector waiting for pid 774557
[2025-10-15 23:36:12] 2025-10-15 21:35:40,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-15 23:36:12] 2025-10-15 21:35:40,548 | INFO     | collected zombie processes
[2025-10-15 23:36:12] 2025-10-15 21:35:40,548 | INFO     | will attempt to kill all subprocesses of pid=774557
[2025-10-15 23:36:12] 2025-10-15 21:35:40,650 | INFO     | process IDs to be killed: [774557] (in reverse order)
[2025-10-15 23:36:12] 2025-10-15 21:35:40,717 | WARNING  | found no corresponding commands to process id(s)
[2025-10-15 23:36:12] 2025-10-15 21:35:40,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-15 23:36:12] 2025-10-15 21:35:40,721 | INFO     | did not find any defunct processes belonging to 774557
[2025-10-15 23:36:12] 2025-10-15 21:35:40,724 | INFO     | did not find any defunct processes belonging to 774557
[2025-10-15 23:36:12] 2025-10-15 21:35:40,724 | INFO     | ready for new job
[2025-10-15 23:36:12] 2025-10-15 21:35:40,725 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-15 23:36:12] 2025-10-15 21:35:40,726 | INFO     | ***************************************
[2025-10-15 23:36:12] 2025-10-15 21:35:40,726 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-15 23:36:12] 2025-10-15 21:35:40,726 | INFO     | ***************************************
[2025-10-15 23:36:12] 2025-10-15 21:35:40,726 | INFO     | 
[2025-10-15 23:36:12] 2025-10-15 21:35:40,727 | INFO     | architecture information:
[2025-10-15 23:36:12] 2025-10-15 21:35:40,727 | INFO     | executing command: cat /etc/os-release
[2025-10-15 23:36:12] 2025-10-15 21:35:40,738 | INFO     | cat /etc/os-release:
[2025-10-15 23:36:12] NAME="CentOS Linux"
[2025-10-15 23:36:12] VERSION="7 (Core)"
[2025-10-15 23:36:12] ID="centos"
[2025-10-15 23:36:12] ID_LIKE="rhel fedora"
[2025-10-15 23:36:12] VERSION_ID="7"
[2025-10-15 23:36:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-15 23:36:12] ANSI_COLOR="0;31"
[2025-10-15 23:36:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-15 23:36:12] HOME_URL="https://www.centos.org/"
[2025-10-15 23:36:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-15 23:36:12] 
[2025-10-15 23:36:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-15 23:36:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-15 23:36:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-15 23:36:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-15 23:36:12] 
[2025-10-15 23:36:12] 2025-10-15 21:35:40,738 | INFO     | ***************************************
[2025-10-15 23:36:12] 2025-10-15 21:35:41,240 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-15 23:36:12] 2025-10-15 21:35:41,260 | INFO     | sufficient remaining disk space (25103958016 B)
[2025-10-15 23:36:12] 2025-10-15 21:35:41,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-15 23:36:12] 2025-10-15 21:35:41,261 | INFO     | current server update state: UPDATING_FINAL
[2025-10-15 23:36:12] 2025-10-15 21:35:41,261 | INFO     | update_server=False
[2025-10-15 23:36:12] 2025-10-15 21:35:41,261 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-15 23:36:12] 2025-10-15 21:35:41,261 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-15 23:36:12] 2025-10-15 21:35:41,289 | INFO     | all payload control threads have been joined
[2025-10-15 23:36:12] 2025-10-15 21:35:41,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-15 23:36:12] 2025-10-15 21:35:41,684 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-15 23:36:12] 2025-10-15 21:35:41,684 | INFO     | aborting loop
[2025-10-15 23:36:12] 2025-10-15 21:35:41,729 | INFO     | all data control threads have been joined
[2025-10-15 23:36:12] 2025-10-15 21:35:42,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-15 23:36:12] 2025-10-15 21:35:42,266 | INFO     | [job] retrieve thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,266 | INFO     | [job] queue monitor thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,292 | INFO     | [payload] control thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,420 | INFO     | all job control threads have been joined
[2025-10-15 23:36:12] 2025-10-15 21:35:42,582 | INFO     | [payload] validate_post thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,648 | INFO     | [job] validate thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,689 | INFO     | [job] job monitor thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,734 | INFO     | [data] control thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:42,760 | INFO     | [job] create_data_payload thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:43,044 | INFO     | [payload] execute_payloads thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:43,203 | INFO     | [payload] validate_pre thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:43,425 | INFO     | [job] control thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:43,591 | INFO     | [payload] failed_post thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:43,650 | INFO     | [data] copytool_in thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:44,200 | INFO     | [data] copytool_out thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:45,436 | INFO     | [data] queue_monitor thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:35:51,377 | INFO     | job.realtimelogging is not enabled
[2025-10-15 23:36:12] 2025-10-15 21:35:52,382 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-15 23:36:12] 2025-10-15 21:36:00,518 | INFO     | [monitor] cgroup control has ended
[2025-10-15 23:36:12] 2025-10-15 21:36:01,076 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123313202804544)>', '<ExcThread(monitor, started 123312537597696)>']
[2025-10-15 23:36:12] 2025-10-15 21:36:06,101 | INFO     | all workflow threads have been joined
[2025-10-15 23:36:12] 2025-10-15 21:36:06,101 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-15 23:36:12] 2025-10-15 21:36:06,101 | INFO     | traces error code: 0
[2025-10-15 23:36:12] 2025-10-15 21:36:06,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-15 23:36:12] 2025-10-15 21:36:12,286 | INFO     | PID=767981 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-15 23:36:12] 2025-10-15 21:36:12,287 | INFO     | found 0 job(s) in 20 queues
[2025-10-15 23:36:12] 2025-10-15 21:36:12,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-15 23:36:12] 2025-10-15 21:36:12,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-15 23:36:12] 2025-10-15 21:36:12,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-15 23:36:12] 2025-10-15 21:36:12,287 | INFO     | [monitor] control thread has ended
[2025-10-15 23:36:12] 2025-10-15 21:36:12,398 [wrapper] ==== pilot stdout END ====
[2025-10-15 23:36:12] 2025-10-15 21:36:12,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-15 23:36:12] 2025-10-15 21:36:12,407 [wrapper] pilotpid: 767981
[2025-10-15 23:36:12] 2025-10-15 21:36:12,410 [wrapper] Pilot exit status: 0
[2025-10-15 23:36:12] 2025-10-15 21:36:12,426 [wrapper] pandaids: 6839821828
[2025-10-15 23:36:12] 2025-10-15 21:36:12,456 [wrapper] cleanup supervisor_pilot  789328 767982
[2025-10-15 23:36:12] 2025-10-15 21:36:12,460 [wrapper] Test setup, not cleaning
[2025-10-15 23:36:12] 2025-10-15 21:36:12,464 [wrapper] apfmon messages muted
[2025-10-15 23:36:12] 2025-10-15 21:36:12,467 [wrapper] ==== wrapper stdout END ====
[2025-10-15 23:36:12] 2025-10-15 21:36:12,471 [wrapper] ==== wrapper stderr END ====
[2025-10-15 23:36:12]  *** Error codes and diagnostics ***
[2025-10-15 23:36:12]     "exeErrorCode": 0,
[2025-10-15 23:36:12]     "exeErrorDiag": "",
[2025-10-15 23:36:12]     "pilotErrorCode": 0,
[2025-10-15 23:36:12]     "pilotErrorDiag": "",
[2025-10-15 23:36:12]  *** Listing of results directory ***
[2025-10-15 23:36:12] total 408180
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc    557409 Oct 12 11:04 pilot3.tar.gz
[2025-10-15 23:36:12] -rwx------ 1 boinc boinc     36292 Oct 12 11:10 runpilot2-wrapper.sh
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc      5112 Oct 12 11:10 queuedata.json
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc       100 Oct 15 22:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-15 23:36:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 15 22:30 run_atlas
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc       105 Oct 15 22:30 job.xml
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc      9382 Oct 15 22:30 init_data.xml
[2025-10-15 23:36:12] -rw-r--r-- 2 boinc boinc 219511036 Oct 15 22:30 EVNT.46676267._003566.pool.root.1
[2025-10-15 23:36:12] drwxrwx--x 2 boinc boinc      4096 Oct 15 22:30 shared
[2025-10-15 23:36:12] -rw-r--r-- 2 boinc boinc    569676 Oct 15 22:30 input.tar.gz
[2025-10-15 23:36:12] -rw-r--r-- 2 boinc boinc     15120 Oct 15 22:30 start_atlas.sh
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc         0 Oct 15 22:30 boinc_lockfile
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc      2549 Oct 15 22:30 pandaJob.out
[2025-10-15 23:36:12] -rw------- 1 boinc boinc    974310 Oct 15 22:30 agis_schedconf.cvmfs.json
[2025-10-15 23:36:12] -rw------- 1 boinc boinc   1560740 Oct 15 22:30 agis_ddmendpoints.agis.ALL.json
[2025-10-15 23:36:12] drwx------ 5 boinc boinc      4096 Oct 15 22:30 pilot3
[2025-10-15 23:36:12] -rw------- 1 boinc boinc 192652613 Oct 15 23:35 HITS.46676269._075149.pool.root.1
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc       529 Oct 15 23:35 boinc_task_state.xml
[2025-10-15 23:36:12] -rw------- 1 boinc boinc      1041 Oct 15 23:35 memory_monitor_summary.json
[2025-10-15 23:36:12] -rw------- 1 boinc boinc    380655 Oct 15 23:35 log.46676269._075149.job.log.tgz.1
[2025-10-15 23:36:12] -rw------- 1 boinc boinc      7773 Oct 15 23:35 heartbeat.json
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc      8192 Oct 15 23:36 boinc_mmap_file
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc        27 Oct 15 23:36 wrapper_checkpoint.txt
[2025-10-15 23:36:12] -rw------- 1 boinc boinc       746 Oct 15 23:36 pilotlog.txt
[2025-10-15 23:36:12] -rw------- 1 boinc boinc        95 Oct 15 23:36 pilot_heartbeat.json
[2025-10-15 23:36:12] -rw------- 1 boinc boinc    575721 Oct 15 23:36 log.46676269._075149.job.log.1
[2025-10-15 23:36:12] -rw------- 1 boinc boinc       357 Oct 15 23:36 output.list
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc       620 Oct 15 23:36 runtime_log
[2025-10-15 23:36:12] -rw------- 1 boinc boinc    972800 Oct 15 23:36 result.tar.gz
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc      8730 Oct 15 23:36 runtime_log.err
[2025-10-15 23:36:12] -rw------- 1 boinc boinc       642 Oct 15 23:36 FoPLDmfH7R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmoYTMDmm3mdMm.diag
[2025-10-15 23:36:12] -rw-r--r-- 1 boinc boinc     21963 Oct 15 23:36 stderr.txt
[2025-10-15 23:36:12] HITS file was successfully produced:
[2025-10-15 23:36:12] -rw------- 1 boinc boinc 192652613 Oct 15 23:35 shared/HITS.pool.root.1
[2025-10-15 23:36:12]  *** Contents of shared directory: ***
[2025-10-15 23:36:12] total 404044
[2025-10-15 23:36:12] -rw-r--r-- 2 boinc boinc 219511036 Oct 15 22:30 ATLAS.root_0
[2025-10-15 23:36:12] -rw-r--r-- 2 boinc boinc    569676 Oct 15 22:30 input.tar.gz
[2025-10-15 23:36:12] -rw-r--r-- 2 boinc boinc     15120 Oct 15 22:30 start_atlas.sh
[2025-10-15 23:36:12] -rw------- 1 boinc boinc 192652613 Oct 15 23:35 HITS.pool.root.1
[2025-10-15 23:36:12] -rw------- 1 boinc boinc    972800 Oct 15 23:36 result.tar.gz
23:36:13 (764209): run_atlas exited; CPU time 40346.871851
23:36:13 (764209): called boinc_finish(0)

</stderr_txt>
]]>

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