Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:20:12 (19916): wrapper (7.7.26015): starting
11:20:12 (19916): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 11:20:12] Arguments: --nthreads 12
[2025-10-12 11:20:12] Threads: 12
[2025-10-12 11:20:12] Checking for CVMFS
[2025-10-12 11:20:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:20:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:20:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:20:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:20:12] 2.11.2.0 3165 8674 87656 151625 2 56 11783307 20275200 1 130560 0 8364684 99.993 288193 42943 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:20:12] CVMFS is ok
[2025-10-12 11:20:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:20:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:20:12] Further information can be found at the LHC@home message board.
[2025-10-12 11:20:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:20:12] Checking for apptainer binary...
[2025-10-12 11:20:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:20:12] Running /usr/bin/apptainer --version
[2025-10-12 11:20:13] apptainer version 1.3.2-1.el7
[2025-10-12 11:20:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:20:14] c-115-40.aglt2.org
[2025-10-12 11:20:14] apptainer works
[2025-10-12 11:20:14] Set ATHENA_PROC_NUMBER=12
[2025-10-12 11:20:14] Set ATHENA_CORE_NUMBER=12
[2025-10-12 11:20:14] Starting ATLAS job with PandaID=6839871021
[2025-10-12 11:20:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:23:02]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:23:02]  protocol_id=None
[2025-10-12 12:23:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 12:23:02]  replicas=None
[2025-10-12 12:23:02]  scope=mc23_13p6TeV
[2025-10-12 12:23:02]  status=None
[2025-10-12 12:23:02]  status_code=0
[2025-10-12 12:23:02]  storage_token=
[2025-10-12 12:23:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839871021/log.46676269._077258.job.log.tgz.1
[2025-10-12 12:23:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/f0/log.46676269._077258.job.log.tgz.1
[2025-10-12 12:23:02]  workdir=None
[2025-10-12 12:23:02] ]
[2025-10-12 12:23:02] 2025-10-12 16:22:23,265 | INFO     | transferring file log.46676269._077258.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839871021/log.46676269._077258.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 12:23:02] 2025-10-12 16:22:23,265 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839871021/log.46676269._077258.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077258.job
[2025-10-12 12:23:02] 2025-10-12 16:22:23,287 | INFO     | adding to output.list: log.46676269._077258.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/f0/log.46676269._077258.job.log.tg
[2025-10-12 12:23:02] 2025-10-12 16:22:23,287 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 12:23:02] 2025-10-12 16:22:23,288 | INFO     | summary of transferred files:
[2025-10-12 12:23:02] 2025-10-12 16:22:23,288 | INFO     |  -- lfn=log.46676269._077258.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:23:02] 2025-10-12 16:22:23,288 | INFO     | stage-out finished correctly
[2025-10-12 12:23:02] 2025-10-12 16:22:23,367 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:23:02] 2025-10-12 16:22:23,684 | INFO     | monitor loop #280: job 0:6839871021 is in state 'finished'
[2025-10-12 12:23:02] 2025-10-12 16:22:23,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:23:02] 2025-10-12 16:22:24,964 | INFO     | time since job start (3716s) is within the limit (172800.0s)
[2025-10-12 12:23:02] 2025-10-12 16:22:25,350 | INFO     | job 6839871021 has state=finished
[2025-10-12 12:23:02] 2025-10-12 16:22:25,350 | INFO     | preparing for final server update for job 6839871021 in state='finished'
[2025-10-12 12:23:02] 2025-10-12 16:22:25,350 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:23:02] 2025-10-12 16:22:25,351 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:23:02] 2025-10-12 16:22:25,351 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:23:02] 2025-10-12 16:22:25,351 | INFO     | job 6839871021 has finished - writing final server update
[2025-10-12 12:23:02] 2025-10-12 16:22:25,351 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:23:02] 2025-10-12 16:22:25,352 | INFO     | executing command: lscpu
[2025-10-12 12:23:02] 2025-10-12 16:22:25,377 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:23:02] 2025-10-12 16:22:26,187 | INFO     | monitor loop #281: job 0:6839871021 is in state 'finished'
[2025-10-12 12:23:02] 2025-10-12 16:22:26,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:23:02] 2025-10-12 16:22:26,970 | INFO     | time since job start (3718s) is within the limit (172800.0s)
[2025-10-12 12:23:02] 2025-10-12 16:22:28,690 | INFO     | monitor loop #282: job 0:6839871021 is in state 'finished'
[2025-10-12 12:23:02] 2025-10-12 16:22:28,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 12:23:02] 2025-10-12 16:22:28,975 | INFO     | time since job start (3720s) is within the limit (172800.0s)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,868 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 12:23:02] 2025-10-12 16:22:29,870 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-12 12:23:02] 2025-10-12 16:22:29,872 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839871021/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,873 | INFO     | extracted standard info from prmon json
[2025-10-12 12:23:02] 2025-10-12 16:22:29,873 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:23:02] 2025-10-12 16:22:29,873 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:23:02] 2025-10-12 16:22:29,873 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:23:02] 2025-10-12 16:22:29,873 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:23:02] 2025-10-12 16:22:29,874 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:23:02] 2025-10-12 16:22:29,875 | INFO     | sum of square deviations: 48810217.5
[2025-10-12 12:23:02] 2025-10-12 16:22:29,875 | INFO     | sum of deviations: 819275262.0
[2025-10-12 12:23:02] 2025-10-12 16:22:29,875 | INFO     | mean x: 1760284378.5
[2025-10-12 12:23:02] 2025-10-12 16:22:29,875 | INFO     | mean y: 2985850.2592592593
[2025-10-12 12:23:02] 2025-10-12 16:22:29,875 | INFO     | -- intersect: -29543234577.668453
[2025-10-12 12:23:02] 2025-10-12 16:22:29,875 | INFO     | intersect: -29543234577.668453
[2025-10-12 12:23:02] 2025-10-12 16:22:29,876 | INFO     | chi2: 0.0007338318406513951
[2025-10-12 12:23:02] 2025-10-12 16:22:29,876 | INFO     | -- intersect: -29543234577.668453
[2025-10-12 12:23:02] 2025-10-12 16:22:29,876 | INFO     | current memory leak: 16.78 B/s (using 54 data points, chi2=0.00)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,876 | INFO     | could have reported an average CPU frequency of 2006 MHz (6 samples)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,876 | INFO     | ..............................
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . Timing measurements:
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . get job = 0 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . initial setup = 2 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . payload setup = 7 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . stage-in = 0 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . payload execution = 3687 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . stage-out = 0 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | . log creation = 0 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,877 | INFO     | ..............................
[2025-10-12 12:23:02] 2025-10-12 16:22:29,952 | INFO     | 
[2025-10-12 12:23:02] 2025-10-12 16:22:29,952 | INFO     | job summary report
[2025-10-12 12:23:02] 2025-10-12 16:22:29,952 | INFO     | --------------------------------------------------
[2025-10-12 12:23:02] 2025-10-12 16:22:29,953 | INFO     | PanDA job id: 6839871021
[2025-10-12 12:23:02] 2025-10-12 16:22:29,953 | INFO     | task id: 46676269
[2025-10-12 12:23:02] 2025-10-12 16:22:29,953 | INFO     | errors: (none)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:23:02] 2025-10-12 16:22:29,953 | INFO     | pilot state: finished 
[2025-10-12 12:23:02] 2025-10-12 16:22:29,953 | INFO     | transexitcode: 0
[2025-10-12 12:23:02] 2025-10-12 16:22:29,954 | INFO     | exeerrorcode: 0
[2025-10-12 12:23:02] 2025-10-12 16:22:29,954 | INFO     | exeerrordiag: 
[2025-10-12 12:23:02] 2025-10-12 16:22:29,954 | INFO     | exitcode: 0
[2025-10-12 12:23:02] 2025-10-12 16:22:29,954 | INFO     | exitmsg: OK
[2025-10-12 12:23:02] 2025-10-12 16:22:29,954 | INFO     | cpuconsumptiontime: 40478 s
[2025-10-12 12:23:02] 2025-10-12 16:22:29,954 | INFO     | nevents: 400
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | neventsw: 0
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | pid: 30056
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | pgrp: 30056
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | corecount: 12
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | event service: False
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 12: 2349152, 3698: 2374881, 3699: 2384063, 3705: 2384201}
[2025-10-12 12:23:02] 2025-10-12 16:22:29,955 | INFO     | --------------------------------------------------
[2025-10-12 12:23:02] 2025-10-12 16:22:29,956 | INFO     | 
[2025-10-12 12:23:02] 2025-10-12 16:22:29,956 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 12:23:02] 2025-10-12 16:22:29,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,980 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,982 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:23:02] 2025-10-12 16:22:29,982 | INFO     | job 6839871021 has completed (purged errors)
[2025-10-12 12:23:02] 2025-10-12 16:22:29,983 | INFO     | overall cleanup function is called
[2025-10-12 12:23:02] 2025-10-12 16:22:30,991 | INFO     | --- collectZombieJob: --- 10, [30056]
[2025-10-12 12:23:02] 2025-10-12 16:22:30,992 | INFO     | zombie collector waiting for pid 30056
[2025-10-12 12:23:02] 2025-10-12 16:22:30,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:23:02] 2025-10-12 16:22:30,992 | INFO     | collected zombie processes
[2025-10-12 12:23:02] 2025-10-12 16:22:30,992 | INFO     | will attempt to kill all subprocesses of pid=30056
[2025-10-12 12:23:02] 2025-10-12 16:22:31,079 | INFO     | process IDs to be killed: [30056] (in reverse order)
[2025-10-12 12:23:02] 2025-10-12 16:22:31,129 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:23:02] 2025-10-12 16:22:31,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:23:02] 2025-10-12 16:22:31,133 | INFO     | did not find any defunct processes belonging to 30056
[2025-10-12 12:23:02] 2025-10-12 16:22:31,136 | INFO     | did not find any defunct processes belonging to 30056
[2025-10-12 12:23:02] 2025-10-12 16:22:31,136 | INFO     | ready for new job
[2025-10-12 12:23:02] 2025-10-12 16:22:31,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:23:02] 2025-10-12 16:22:31,137 | INFO     | ***************************************
[2025-10-12 12:23:02] 2025-10-12 16:22:31,138 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:23:02] 2025-10-12 16:22:31,138 | INFO     | ***************************************
[2025-10-12 12:23:02] 2025-10-12 16:22:31,138 | INFO     | 
[2025-10-12 12:23:02] 2025-10-12 16:22:31,138 | INFO     | architecture information:
[2025-10-12 12:23:02] 2025-10-12 16:22:31,139 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:23:02] 2025-10-12 16:22:31,152 | INFO     | cat /etc/os-release:
[2025-10-12 12:23:02] NAME="CentOS Linux"
[2025-10-12 12:23:02] VERSION="7 (Core)"
[2025-10-12 12:23:02] ID="centos"
[2025-10-12 12:23:02] ID_LIKE="rhel fedora"
[2025-10-12 12:23:02] VERSION_ID="7"
[2025-10-12 12:23:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:23:02] ANSI_COLOR="0;31"
[2025-10-12 12:23:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:23:02] HOME_URL="https://www.centos.org/"
[2025-10-12 12:23:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:23:02] 
[2025-10-12 12:23:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:23:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:23:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:23:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:23:02] 
[2025-10-12 12:23:02] 2025-10-12 16:22:31,153 | INFO     | ***************************************
[2025-10-12 12:23:02] 2025-10-12 16:22:31,656 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 12:23:02] 2025-10-12 16:22:31,672 | INFO     | sufficient remaining disk space (18708692992 B)
[2025-10-12 12:23:02] 2025-10-12 16:22:31,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:23:02] 2025-10-12 16:22:31,672 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:23:02] 2025-10-12 16:22:31,672 | INFO     | update_server=False
[2025-10-12 12:23:02] 2025-10-12 16:22:31,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:23:02] 2025-10-12 16:22:31,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:23:02] 2025-10-12 16:22:31,673 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:23:02] 2025-10-12 16:22:32,178 | INFO     | all data control threads have been joined
[2025-10-12 12:23:02] 2025-10-12 16:22:32,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:23:02] 2025-10-12 16:22:32,212 | INFO     | aborting loop
[2025-10-12 12:23:02] 2025-10-12 16:22:32,675 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:32,678 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:32,679 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:32,949 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,112 | INFO     | all payload control threads have been joined
[2025-10-12 12:23:02] 2025-10-12 16:22:33,183 | INFO     | [data] control thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,202 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,216 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,267 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,330 | INFO     | all job control threads have been joined
[2025-10-12 12:23:02] 2025-10-12 16:22:33,591 | INFO     | [job] validate thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,676 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,833 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,843 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:33,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:23:02] 2025-10-12 16:22:34,031 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:34,117 | INFO     | [payload] control thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:34,255 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:23:02] 2025-10-12 16:22:34,336 | INFO     | [job] control thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:37,952 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:23:02] 2025-10-12 16:22:38,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777058268992)>', '<ExcThread(monitor, started 139776313239296)>']
[2025-10-12 12:23:02] 2025-10-12 16:22:43,532 | INFO     | all workflow threads have been joined
[2025-10-12 12:23:02] 2025-10-12 16:22:43,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:23:02] 2025-10-12 16:22:43,532 | INFO     | traces error code: 0
[2025-10-12 12:23:02] 2025-10-12 16:22:43,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:23:02] 2025-10-12 16:23:02,175 | INFO     | PID=23707 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 12:23:02] 2025-10-12 16:23:02,175 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:23:02] 2025-10-12 16:23:02,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:23:02] 2025-10-12 16:23:02,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:23:02] 2025-10-12 16:23:02,176 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:23:02] 2025-10-12 16:23:02,176 | INFO     | [monitor] control thread has ended
[2025-10-12 12:23:02] 2025-10-12 16:23:02,263 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:23:02] 2025-10-12 16:23:02,266 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:23:02] 2025-10-12 16:23:02,270 [wrapper] pilotpid: 23707
[2025-10-12 12:23:02] 2025-10-12 16:23:02,274 [wrapper] Pilot exit status: 0
[2025-10-12 12:23:02] 2025-10-12 16:23:02,288 [wrapper] pandaids: 6839871021
[2025-10-12 12:23:02] 2025-10-12 16:23:02,327 [wrapper] cleanup supervisor_pilot 28276 23708
[2025-10-12 12:23:02] 2025-10-12 16:23:02,331 [wrapper] Test setup, not cleaning
[2025-10-12 12:23:02] 2025-10-12 16:23:02,335 [wrapper] apfmon messages muted
[2025-10-12 12:23:02] 2025-10-12 16:23:02,338 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:23:02] 2025-10-12 16:23:02,342 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:23:02]  *** Error codes and diagnostics ***
[2025-10-12 12:23:02]     "exeErrorCode": 0,
[2025-10-12 12:23:02]     "exeErrorDiag": "",
[2025-10-12 12:23:02]     "pilotErrorCode": 0,
[2025-10-12 12:23:02]     "pilotErrorDiag": "",
[2025-10-12 12:23:02]  *** Listing of results directory ***
[2025-10-12 12:23:02] total 407740
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:23 pilot3.tar.gz
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:36 queuedata.json
[2025-10-12 12:23:02] -rwx------ 1 boincer umatlas     36292 Oct 12 07:37 runpilot2-wrapper.sh
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:23:02] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:20 run_atlas
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:20 job.xml
[2025-10-12 12:23:02] -rw-r--r-- 2 boincer umatlas 221164308 Oct 12 11:20 EVNT.46676267._003702.pool.root.1
[2025-10-12 12:23:02] -rw-r--r-- 2 boincer umatlas    569690 Oct 12 11:20 input.tar.gz
[2025-10-12 12:23:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:20 start_atlas.sh
[2025-10-12 12:23:02] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:20 shared
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:20 boinc_lockfile
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 11:20 pandaJob.out
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas    975528 Oct 12 11:20 agis_schedconf.cvmfs.json
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas   1560580 Oct 12 11:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:23:02] drwx------ 5 boincer umatlas      4096 Oct 12 11:20 pilot3
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 12:18 init_data.xml
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas 190593036 Oct 12 12:21 HITS.46676269._077258.pool.root.1
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas       529 Oct 12 12:22 boinc_task_state.xml
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas        95 Oct 12 12:22 pilot_heartbeat.json
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas      1050 Oct 12 12:22 memory_monitor_summary.json
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas    382506 Oct 12 12:22 log.46676269._077258.job.log.tgz.1
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas      7855 Oct 12 12:22 heartbeat.json
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 12:22 boinc_mmap_file
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas        27 Oct 12 12:22 wrapper_checkpoint.txt
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas       745 Oct 12 12:23 pilotlog.txt
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas    552478 Oct 12 12:23 log.46676269._077258.job.log.1
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas       357 Oct 12 12:23 output.list
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas       620 Oct 12 12:23 runtime_log
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas    952320 Oct 12 12:23 result.tar.gz
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas       659 Oct 12 12:23 XIuKDm7Y9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm5lTMDmOaG3Fn.diag
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 12:23 runtime_log.err
[2025-10-12 12:23:02] -rw-r--r-- 1 boincer umatlas     21787 Oct 12 12:23 stderr.txt
[2025-10-12 12:23:02] HITS file was successfully produced:
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas 190593036 Oct 12 12:21 shared/HITS.pool.root.1
[2025-10-12 12:23:02]  *** Contents of shared directory: ***
[2025-10-12 12:23:02] total 403624
[2025-10-12 12:23:02] -rw-r--r-- 2 boincer umatlas 221164308 Oct 12 11:20 ATLAS.root_0
[2025-10-12 12:23:02] -rw-r--r-- 2 boincer umatlas    569690 Oct 12 11:20 input.tar.gz
[2025-10-12 12:23:02] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:20 start_atlas.sh
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas 190593036 Oct 12 12:21 HITS.pool.root.1
[2025-10-12 12:23:02] -rw------- 1 boincer umatlas    952320 Oct 12 12:23 result.tar.gz
12:23:03 (19916): run_atlas exited; CPU time 40471.450290
12:23:03 (19916): called boinc_finish(0)

</stderr_txt>
]]>

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