Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:44:48 (1952314): wrapper (7.7.26015): starting
02:44:48 (1952314): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 02:44:48] Arguments: --nthreads 2
[2025-10-13 02:44:48] Threads: 2
[2025-10-13 02:44:48] Checking for CVMFS
[2025-10-13 02:44:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:44:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:44:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:44:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:44:48] 2.9.2.0 779100 5116 61668 151642 1 57 19610432 36864001 0 130560 0 3102629 99.989 176624 825 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 02:44:48] CVMFS is ok
[2025-10-13 02:44:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:44:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:44:48] Further information can be found at the LHC@home message board.
[2025-10-13 02:44:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:44:48] Checking for apptainer binary...
[2025-10-13 02:44:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:44:48] Running /usr/bin/apptainer --version
[2025-10-13 02:44:48] apptainer version 1.4.1-1.1
[2025-10-13 02:44:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:44:48] atlasA229
[2025-10-13 02:44:48] apptainer works
[2025-10-13 02:44:48] Set ATHENA_PROC_NUMBER=2
[2025-10-13 02:44:48] Set ATHENA_CORE_NUMBER=2
[2025-10-13 02:44:48] Starting ATLAS job with PandaID=6839927952
[2025-10-13 02:44:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:46:18]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | job 6839927952 has completed (purged errors)
[2025-10-13 04:46:18] 2025-10-13 02:45:28,980 | INFO     | overall cleanup function is called
[2025-10-13 04:46:18] 2025-10-13 02:45:29,986 | INFO     | --- collectZombieJob: --- 10, [1962432]
[2025-10-13 04:46:18] 2025-10-13 02:45:29,987 | INFO     | zombie collector waiting for pid 1962432
[2025-10-13 04:46:18] 2025-10-13 02:45:29,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:46:18] 2025-10-13 02:45:29,987 | INFO     | collected zombie processes
[2025-10-13 04:46:18] 2025-10-13 02:45:29,987 | INFO     | will attempt to kill all subprocesses of pid=1962432
[2025-10-13 04:46:18] 2025-10-13 02:45:30,021 | INFO     | process IDs to be killed: [1962432] (in reverse order)
[2025-10-13 04:46:18] 2025-10-13 02:45:30,042 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:46:18] 2025-10-13 02:45:30,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:46:18] 2025-10-13 02:45:30,043 | INFO     | did not find any defunct processes belonging to 1962432
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | did not find any defunct processes belonging to 1962432
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | ready for new job
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | ***************************************
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | ***************************************
[2025-10-13 04:46:18] 2025-10-13 02:45:30,044 | INFO     | 
[2025-10-13 04:46:18] 2025-10-13 02:45:30,045 | INFO     | architecture information:
[2025-10-13 04:46:18] 2025-10-13 02:45:30,045 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:46:18] 2025-10-13 02:45:30,054 | INFO     | cat /etc/os-release:
[2025-10-13 04:46:18] NAME="CentOS Linux"
[2025-10-13 04:46:18] VERSION="7 (Core)"
[2025-10-13 04:46:18] ID="centos"
[2025-10-13 04:46:18] ID_LIKE="rhel fedora"
[2025-10-13 04:46:18] VERSION_ID="7"
[2025-10-13 04:46:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:46:18] ANSI_COLOR="0;31"
[2025-10-13 04:46:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:46:18] HOME_URL="https://www.centos.org/"
[2025-10-13 04:46:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:46:18] 
[2025-10-13 04:46:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:46:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:46:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:46:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:46:18] 
[2025-10-13 04:46:18] 2025-10-13 02:45:30,054 | INFO     | ***************************************
[2025-10-13 04:46:18] 2025-10-13 02:45:30,557 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | INFO     | sufficient remaining disk space (341117501440 B)
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | INFO     | update_server=False
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | INFO     | aborting loop
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:46:18] 2025-10-13 02:45:30,570 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 04:46:18] 2025-10-13 02:45:30,571 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:46:18] 2025-10-13 02:45:30,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:46:18] 2025-10-13 02:45:30,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:46:18] 2025-10-13 02:45:30,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:46:18] 2025-10-13 02:45:31,501 | INFO     | all data control threads have been joined
[2025-10-13 04:46:18] 2025-10-13 02:45:31,576 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:31,577 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:31,577 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:31,627 | INFO     | all job control threads have been joined
[2025-10-13 04:46:18] 2025-10-13 02:45:31,697 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:31,975 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,021 | INFO     | all payload control threads have been joined
[2025-10-13 04:46:18] 2025-10-13 02:45:32,386 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,409 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,478 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,507 | INFO     | [data] control thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,539 | INFO     | [job] validate thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,577 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,633 | INFO     | [job] control thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:32,961 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:33,027 | INFO     | [payload] control thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:33,236 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:46:18] 2025-10-13 02:45:37,243 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:45:41,397 | INFO     | job.realtimelogging is not enabled
[2025-10-13 04:46:18] 2025-10-13 02:45:42,402 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:46:18] 2025-10-13 02:46:11,845 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:46:18] 2025-10-13 02:46:13,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534719682368)>', '<ExcThread(monitor, started 140533972313856)>']
[2025-10-13 04:46:18] 2025-10-13 02:46:13,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:46:18] 2025-10-13 02:46:13,800 | INFO     | [monitor] control thread has ended
[2025-10-13 04:46:18] 2025-10-13 02:46:18,197 | INFO     | all workflow threads have been joined
[2025-10-13 04:46:18] 2025-10-13 02:46:18,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:46:18] 2025-10-13 02:46:18,198 | INFO     | traces error code: 0
[2025-10-13 04:46:18] 2025-10-13 02:46:18,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:46:18] 2025-10-13 02:46:18,241 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:46:18] 2025-10-13 02:46:18,244 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:46:18] 2025-10-13 02:46:18,246 [wrapper] pilotpid: 1956020
[2025-10-13 04:46:18] 2025-10-13 02:46:18,249 [wrapper] Pilot exit status: 0
[2025-10-13 04:46:18] 2025-10-13 02:46:18,255 [wrapper] pandaids: 6839927952
[2025-10-13 04:46:18] 2025-10-13 02:46:18,269 [wrapper] cleanup supervisor_pilot 1976600 1956021
[2025-10-13 04:46:18] 2025-10-13 02:46:18,272 [wrapper] Test setup, not cleaning
[2025-10-13 04:46:18] 2025-10-13 02:46:18,274 [wrapper] apfmon messages muted
[2025-10-13 04:46:18] 2025-10-13 02:46:18,276 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:46:18] 2025-10-13 02:46:18,278 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:46:18]  *** Error codes and diagnostics ***
[2025-10-13 04:46:18]     "exeErrorCode": 0,
[2025-10-13 04:46:18]     "exeErrorDiag": "",
[2025-10-13 04:46:18]     "pilotErrorCode": 0,
[2025-10-13 04:46:18]     "pilotErrorDiag": "",
[2025-10-13 04:46:18]  *** Listing of results directory ***
[2025-10-13 04:46:18] total 404668
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc    557409 Oct 12 13:54 pilot3.tar.gz
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:55 queuedata.json
[2025-10-13 04:46:18] -rwx------ 1 boinc boinc     36292 Oct 12 13:57 runpilot2-wrapper.sh
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:46:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:44 run_atlas
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:44 job.xml
[2025-10-13 04:46:18] -rw-r--r-- 2 boinc boinc 219702524 Oct 13 02:44 EVNT.46676267._003711.pool.root.1
[2025-10-13 04:46:18] -rw-r--r-- 2 boinc boinc    569675 Oct 13 02:44 input.tar.gz
[2025-10-13 04:46:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:44 start_atlas.sh
[2025-10-13 04:46:18] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:44 shared
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:44 boinc_setup_complete
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc      6206 Oct 13 02:44 init_data.xml
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:44 boinc_lockfile
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:44 pandaJob.out
[2025-10-13 04:46:18] -rw------- 1 boinc boinc    975603 Oct 13 02:45 agis_schedconf.cvmfs.json
[2025-10-13 04:46:18] -rw------- 1 boinc boinc   1560580 Oct 13 02:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:46:18] drwx------ 5 boinc boinc      4096 Oct 13 02:45 pilot3
[2025-10-13 04:46:18] -rw------- 1 boinc boinc        95 Oct 13 04:44 pilot_heartbeat.json
[2025-10-13 04:46:18] -rw------- 1 boinc boinc 188158084 Oct 13 04:44 HITS.46676269._077491.pool.root.1
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc       529 Oct 13 04:45 boinc_task_state.xml
[2025-10-13 04:46:18] -rw------- 1 boinc boinc      1017 Oct 13 04:45 memory_monitor_summary.json
[2025-10-13 04:46:18] -rw------- 1 boinc boinc    271399 Oct 13 04:45 log.46676269._077491.job.log.tgz.1
[2025-10-13 04:46:18] -rw------- 1 boinc boinc      7762 Oct 13 04:45 heartbeat.json
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc      8192 Oct 13 04:46 boinc_mmap_file
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc        27 Oct 13 04:46 wrapper_checkpoint.txt
[2025-10-13 04:46:18] -rw------- 1 boinc boinc      4628 Oct 13 04:46 pilotlog.txt
[2025-10-13 04:46:18] -rw------- 1 boinc boinc   1039324 Oct 13 04:46 log.46676269._077491.job.log.1
[2025-10-13 04:46:18] -rw------- 1 boinc boinc       357 Oct 13 04:46 output.list
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc       620 Oct 13 04:46 runtime_log
[2025-10-13 04:46:18] -rw------- 1 boinc boinc   1331200 Oct 13 04:46 result.tar.gz
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc      8792 Oct 13 04:46 runtime_log.err
[2025-10-13 04:46:18] -rw------- 1 boinc boinc       662 Oct 13 04:46 5LUNDm9s9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmVnTMDmU1B6Po.diag
[2025-10-13 04:46:18] -rw-r--r-- 1 boinc boinc     11637 Oct 13 04:46 stderr.txt
[2025-10-13 04:46:18] HITS file was successfully produced:
[2025-10-13 04:46:18] -rw------- 1 boinc boinc 188158084 Oct 13 04:44 shared/HITS.pool.root.1
[2025-10-13 04:46:18]  *** Contents of shared directory: ***
[2025-10-13 04:46:18] total 400192
[2025-10-13 04:46:18] -rw-r--r-- 2 boinc boinc 219702524 Oct 13 02:44 ATLAS.root_0
[2025-10-13 04:46:18] -rw-r--r-- 2 boinc boinc    569675 Oct 13 02:44 input.tar.gz
[2025-10-13 04:46:18] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:44 start_atlas.sh
[2025-10-13 04:46:18] -rw------- 1 boinc boinc 188158084 Oct 13 04:44 HITS.pool.root.1
[2025-10-13 04:46:18] -rw------- 1 boinc boinc   1331200 Oct 13 04:46 result.tar.gz
04:46:19 (1952314): run_atlas exited; CPU time 14050.948055
04:46:19 (1952314): called boinc_finish(0)

</stderr_txt>
]]>

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