Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:42:48 (1683301): wrapper (7.7.26015): starting
15:42:48 (1683301): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 15:42:48] Arguments: --nthreads 9
[2025-10-12 15:42:48] Threads: 9
[2025-10-12 15:42:48] Checking for CVMFS
[2025-10-12 15:42:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:42:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:42:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:42:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:42:50] 2.13.2.0 1101976 129697 284856 151635 3 144 21792612 32935937 21870 16776704 0 172002661 99.814 79321455 29198 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 15:42:50] CVMFS is ok
[2025-10-12 15:42:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:42:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:42:50] Further information can be found at the LHC@home message board.
[2025-10-12 15:42:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:42:50] Checking for apptainer binary...
[2025-10-12 15:42:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:42:50] Running /usr/bin/apptainer --version
[2025-10-12 15:42:50] apptainer version 1.4.3-1.el9
[2025-10-12 15:42:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:42:51] c-5-2.aglt2.org
[2025-10-12 15:42:51] apptainer works
[2025-10-12 15:42:51] Set ATHENA_PROC_NUMBER=9
[2025-10-12 15:42:51] Set ATHENA_CORE_NUMBER=9
[2025-10-12 15:42:51] Starting ATLAS job with PandaID=6839928382
[2025-10-12 15:42:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:30:09 (2606306): wrapper (7.7.26015): starting
20:30:09 (2606306): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:30:09] Arguments: --nthreads 8
[2025-10-12 20:30:09] Threads: 8
[2025-10-12 20:30:09] This job has been restarted, cleaning up previous attempt
[2025-10-12 20:30:09] Checking for CVMFS
[2025-10-12 20:30:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:30:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:30:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:30:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:30:11] 2.13.2.0 1101976 129984 294096 151642 0 382 24002126 32935936 25227 16776704 0 172849796 99.814 80110898 29177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 20:30:11] CVMFS is ok
[2025-10-12 20:30:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:30:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:30:11] Further information can be found at the LHC@home message board.
[2025-10-12 20:30:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:30:11] Checking for apptainer binary...
[2025-10-12 20:30:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:30:11] Running /usr/bin/apptainer --version
[2025-10-12 20:30:11] apptainer version 1.4.3-1.el9
[2025-10-12 20:30:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:30:11] c-5-2.aglt2.org
[2025-10-12 20:30:11] apptainer works
[2025-10-12 20:30:11] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:30:11] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:30:11] Starting ATLAS job with PandaID=6839928382
[2025-10-12 20:30:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:50:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:50:05] 2025-10-13 10:49:19,483 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 06:50:05] 2025-10-13 10:49:19,557 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2052250000015
[2025-10-13 06:50:05] 2025-10-13 10:49:19,599 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6839928382/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,600 | INFO     | extracted standard info from prmon json
[2025-10-13 06:50:05] 2025-10-13 10:49:19,600 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:50:05] 2025-10-13 10:49:19,600 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:50:05] 2025-10-13 10:49:19,614 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:50:05] 2025-10-13 10:49:19,614 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:50:05] 2025-10-13 10:49:19,704 | INFO     | time since job start (37116s) is within the limit (172800.0s)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,712 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:50:05] 2025-10-13 10:49:19,713 | INFO     | sum of square deviations: 69348583864.95888
[2025-10-13 06:50:05] 2025-10-13 10:49:19,774 | INFO     | sum of deviations: -25013429178.049393
[2025-10-13 06:50:05] 2025-10-13 10:49:19,774 | INFO     | mean x: 1760334015.0082371
[2025-10-13 06:50:05] 2025-10-13 10:49:19,774 | INFO     | mean y: 2121049.0098846788
[2025-10-13 06:50:05] 2025-10-13 10:49:19,774 | INFO     | -- intersect: 637058170.4349234
[2025-10-13 06:50:05] 2025-10-13 10:49:19,774 | INFO     | intersect: 637058170.4349234
[2025-10-13 06:50:05] 2025-10-13 10:49:19,804 | INFO     | monitor loop #1855: job 0:6839928382 is in state 'finished'
[2025-10-13 06:50:05] 2025-10-13 10:49:19,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,805 | INFO     | chi2: 3.3057878687621223
[2025-10-13 06:50:05] 2025-10-13 10:49:19,806 | INFO     | sum of square deviations: 67649101442.33394
[2025-10-13 06:50:05] 2025-10-13 10:49:19,817 | INFO     | sum of deviations: 27389506674.6197
[2025-10-13 06:50:05] 2025-10-13 10:49:19,817 | INFO     | mean x: 1760333862.5166113
[2025-10-13 06:50:05] 2025-10-13 10:49:19,817 | INFO     | mean y: 2125732.088039867
[2025-10-13 06:50:05] 2025-10-13 10:49:19,817 | INFO     | -- intersect: -710591437.083193
[2025-10-13 06:50:05] 2025-10-13 10:49:19,817 | INFO     | intersect: -710591437.083193
[2025-10-13 06:50:05] 2025-10-13 10:49:19,818 | INFO     | chi2: 2.5536384149877276
[2025-10-13 06:50:05] 2025-10-13 10:49:19,818 | INFO     | current chi2=2.5536384149877276 (change=22.752502085260627 %)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,818 | INFO     | right removable region: 601
[2025-10-13 06:50:05] 2025-10-13 10:49:19,819 | INFO     | sum of square deviations: 67648728122.333984
[2025-10-13 06:50:05] 2025-10-13 10:49:19,829 | INFO     | sum of deviations: -135764709686.35384
[2025-10-13 06:50:05] 2025-10-13 10:49:19,830 | INFO     | mean x: 1760334167.5166113
[2025-10-13 06:50:05] 2025-10-13 10:49:19,830 | INFO     | mean y: 2130966.88538206
[2025-10-13 06:50:05] 2025-10-13 10:49:19,830 | INFO     | -- intersect: 3534958025.683551
[2025-10-13 06:50:05] 2025-10-13 10:49:19,830 | INFO     | intersect: 3534958025.683551
[2025-10-13 06:50:05] 2025-10-13 10:49:19,831 | INFO     | chi2: 1.362681683581833
[2025-10-13 06:50:05] 2025-10-13 10:49:19,831 | INFO     | current chi2=1.362681683581833 (change=58.77891329754018 %)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,832 | INFO     | sum of square deviations: 65976909383.671776
[2025-10-13 06:50:05] 2025-10-13 10:49:19,843 | INFO     | sum of deviations: -168906347731.75873
[2025-10-13 06:50:05] 2025-10-13 10:49:19,843 | INFO     | mean x: 1760334320.0234506
[2025-10-13 06:50:05] 2025-10-13 10:49:19,843 | INFO     | mean y: 2133986.1256281408
[2025-10-13 06:50:05] 2025-10-13 10:49:19,843 | INFO     | -- intersect: 4508735516.260576
[2025-10-13 06:50:05] 2025-10-13 10:49:19,844 | INFO     | intersect: 4508735516.260576
[2025-10-13 06:50:05] 2025-10-13 10:49:19,844 | INFO     | chi2: 1.1674496709889097
[2025-10-13 06:50:05] 2025-10-13 10:49:19,845 | INFO     | current chi2=1.1674496709889097 (change=14.327044602210579 %)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,845 | INFO     | left removable region: 20
[2025-10-13 06:50:05] 2025-10-13 10:49:19,846 | INFO     | sum of square deviations: 60813199836.24089
[2025-10-13 06:50:05] 2025-10-13 10:49:19,855 | INFO     | sum of deviations: -102607294098.13261
[2025-10-13 06:50:05] 2025-10-13 10:49:19,855 | INFO     | mean x: 1760334442.0361445
[2025-10-13 06:50:05] 2025-10-13 10:49:19,855 | INFO     | mean y: 2137738.672977625
[2025-10-13 06:50:05] 2025-10-13 10:49:19,855 | INFO     | -- intersect: 2972268471.662868
[2025-10-13 06:50:05] 2025-10-13 10:49:19,856 | INFO     | intersect: 2972268471.662868
[2025-10-13 06:50:05] 2025-10-13 10:49:19,856 | INFO     | chi2: 0.4006738266024444
[2025-10-13 06:50:05] 2025-10-13 10:49:19,857 | INFO     | -- intersect: 2972268471.662868
[2025-10-13 06:50:05] 2025-10-13 10:49:19,857 | INFO     | current memory leak: -1.69 B/s (using 581 data points, chi2=0.40)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | could have reported an average CPU frequency of 2600 MHz (23 samples)
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | ..............................
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | . Timing measurements:
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | . get job = 0 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | . initial setup = 3 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | . payload setup = 23 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | . stage-in = 0 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,858 | INFO     | . payload execution = 37032 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,859 | INFO     | . stage-out = 3 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,859 | INFO     | . log creation = 0 s
[2025-10-13 06:50:05] 2025-10-13 10:49:19,859 | INFO     | ..............................
[2025-10-13 06:50:05] 2025-10-13 10:49:20,065 | INFO     | 
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | job summary report
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | --------------------------------------------------
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | PanDA job id: 6839928382
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | task id: 46676269
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | errors: (none)
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | pilot state: finished 
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | transexitcode: 0
[2025-10-13 06:50:05] 2025-10-13 10:49:20,066 | INFO     | exeerrorcode: 0
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | exeerrordiag: 
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | exitcode: 0
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | exitmsg: OK
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | cpuconsumptiontime: 52424 s
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | nevents: 400
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | neventsw: 0
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | pid: 2637295
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | pgrp: 2637295
[2025-10-13 06:50:05] 2025-10-13 10:49:20,067 | INFO     | corecount: 8
[2025-10-13 06:50:05] 2025-10-13 10:49:20,068 | INFO     | event service: False
[2025-10-13 06:50:05] 2025-10-13 10:49:20,068 | INFO     | sizes: {0: 2348857, 1: 2348857, 12: 2348885, 16: 2349175, 23: 2349203, 37061: 2389477, 37062: 2389632, 37066: 2398742, 37079: 2398880}
[2025-10-13 06:50:05] 2025-10-13 10:49:20,068 | INFO     | --------------------------------------------------
[2025-10-13 06:50:05] 2025-10-13 10:49:20,068 | INFO     | 
[2025-10-13 06:50:05] 2025-10-13 10:49:20,068 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-13 06:50:05] 2025-10-13 10:49:20,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,128 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:50:05] 2025-10-13 10:49:20,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:50:05] 2025-10-13 10:49:20,131 | INFO     | job 6839928382 has completed (purged errors)
[2025-10-13 06:50:05] 2025-10-13 10:49:20,131 | INFO     | overall cleanup function is called
[2025-10-13 06:50:05] 2025-10-13 10:49:21,146 | INFO     | --- collectZombieJob: --- 10, [2637295]
[2025-10-13 06:50:05] 2025-10-13 10:49:21,146 | INFO     | zombie collector waiting for pid 2637295
[2025-10-13 06:50:05] 2025-10-13 10:49:21,146 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:50:05] 2025-10-13 10:49:21,146 | INFO     | collected zombie processes
[2025-10-13 06:50:05] 2025-10-13 10:49:21,146 | INFO     | will attempt to kill all subprocesses of pid=2637295
[2025-10-13 06:50:05] 2025-10-13 10:49:21,881 | INFO     | process IDs to be killed: [2637295] (in reverse order)
[2025-10-13 06:50:05] 2025-10-13 10:49:22,008 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:50:05] 2025-10-13 10:49:22,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:50:05] 2025-10-13 10:49:22,040 | INFO     | did not find any defunct processes belonging to 2637295
[2025-10-13 06:50:05] 2025-10-13 10:49:22,056 | INFO     | did not find any defunct processes belonging to 2637295
[2025-10-13 06:50:05] 2025-10-13 10:49:22,057 | INFO     | ready for new job
[2025-10-13 06:50:05] 2025-10-13 10:49:22,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:50:05] 2025-10-13 10:49:22,061 | INFO     | ***************************************
[2025-10-13 06:50:05] 2025-10-13 10:49:22,061 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:50:05] 2025-10-13 10:49:22,062 | INFO     | ***************************************
[2025-10-13 06:50:05] 2025-10-13 10:49:22,062 | INFO     | 
[2025-10-13 06:50:05] 2025-10-13 10:49:22,064 | INFO     | architecture information:
[2025-10-13 06:50:05] 2025-10-13 10:49:22,066 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:50:05] 2025-10-13 10:49:22,107 | INFO     | cat /etc/os-release:
[2025-10-13 06:50:05] NAME="CentOS Linux"
[2025-10-13 06:50:05] VERSION="7 (Core)"
[2025-10-13 06:50:05] ID="centos"
[2025-10-13 06:50:05] ID_LIKE="rhel fedora"
[2025-10-13 06:50:05] VERSION_ID="7"
[2025-10-13 06:50:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:50:05] ANSI_COLOR="0;31"
[2025-10-13 06:50:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:50:05] HOME_URL="https://www.centos.org/"
[2025-10-13 06:50:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:50:05] 
[2025-10-13 06:50:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:50:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:50:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:50:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:50:05] 
[2025-10-13 06:50:05] 2025-10-13 10:49:22,107 | INFO     | ***************************************
[2025-10-13 06:50:05] 2025-10-13 10:49:22,612 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-13 06:50:05] 2025-10-13 10:49:22,733 | INFO     | sufficient remaining disk space (74435264512 B)
[2025-10-13 06:50:05] 2025-10-13 10:49:22,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:50:05] 2025-10-13 10:49:22,734 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:50:05] 2025-10-13 10:49:22,734 | INFO     | update_server=False
[2025-10-13 06:50:05] 2025-10-13 10:49:22,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:50:05] 2025-10-13 10:49:22,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:50:05] 2025-10-13 10:49:22,898 | INFO     | all payload control threads have been joined
[2025-10-13 06:50:05] 2025-10-13 10:49:23,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:50:05] 2025-10-13 10:49:23,177 | INFO     | all job control threads have been joined
[2025-10-13 06:50:05] 2025-10-13 10:49:23,315 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:50:05] 2025-10-13 10:49:23,315 | INFO     | aborting loop
[2025-10-13 06:50:05] 2025-10-13 10:49:23,740 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:23,756 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:23,847 | INFO     | all data control threads have been joined
[2025-10-13 06:50:05] 2025-10-13 10:49:23,904 | INFO     | [job] validate thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:23,923 | INFO     | [payload] control thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,194 | INFO     | [job] control thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,321 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,396 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,490 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,530 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,853 | INFO     | [data] control thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:24,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:25,058 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:25,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:50:05] 2025-10-13 10:49:25,110 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:25,152 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:26,102 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:26,745 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:50:05] 2025-10-13 10:49:53,347 | INFO     | PID=2616910 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:50:05] 2025-10-13 10:49:53,347 | INFO     | .. there are 33 such processes running
[2025-10-13 06:50:05] 2025-10-13 10:49:53,347 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:50:05] 2025-10-13 10:49:53,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:50:05] 2025-10-13 10:49:53,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:50:05] 2025-10-13 10:49:57,412 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:50:05] 2025-10-13 10:49:58,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596687251264)>', '<ExcThread(monitor, started 140596182230784)>']
[2025-10-13 06:50:05] 2025-10-13 10:49:59,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:50:05] 2025-10-13 10:49:59,381 | INFO     | [monitor] control thread has ended
[2025-10-13 06:50:05] 2025-10-13 10:50:03,845 | INFO     | all workflow threads have been joined
[2025-10-13 06:50:05] 2025-10-13 10:50:03,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:50:05] 2025-10-13 10:50:03,845 | INFO     | traces error code: 0
[2025-10-13 06:50:05] 2025-10-13 10:50:03,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:50:05] 2025-10-13 10:50:04,325 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:50:05] 2025-10-13 10:50:04,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:50:05] 2025-10-13 10:50:04,331 [wrapper] pilotpid: 2616910
[2025-10-13 06:50:05] 2025-10-13 10:50:04,333 [wrapper] Pilot exit status: 0
[2025-10-13 06:50:05] 2025-10-13 10:50:04,450 [wrapper] pandaids: 6839928382 6839928382
[2025-10-13 06:50:05] 2025-10-13 10:50:04,752 [wrapper] cleanup supervisor_pilot  291897 2616911
[2025-10-13 06:50:05] 2025-10-13 10:50:04,765 [wrapper] Test setup, not cleaning
[2025-10-13 06:50:05] 2025-10-13 10:50:04,792 [wrapper] apfmon messages muted
[2025-10-13 06:50:05] 2025-10-13 10:50:04,808 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:50:05] 2025-10-13 10:50:04,816 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:50:05]  *** Error codes and diagnostics ***
[2025-10-13 06:50:05]     "exeErrorCode": 0,
[2025-10-13 06:50:05]     "exeErrorDiag": "",
[2025-10-13 06:50:05]     "pilotErrorCode": 0,
[2025-10-13 06:50:05]     "pilotErrorDiag": "",
[2025-10-13 06:50:05]  *** Listing of results directory ***
[2025-10-13 06:50:05] total 641116
[2025-10-13 06:50:05] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 08:10 pilot3.tar.gz
[2025-10-13 06:50:05] -rwx------. 1 boincer umatlas     36292 Oct 12 08:12 runpilot2-wrapper.sh
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:12 queuedata.json
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas       100 Oct 12 15:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:50:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 15:42 run_atlas
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas       105 Oct 12 15:42 job.xml
[2025-10-13 06:50:05] -rw-r--r--. 3 boincer umatlas 223226424 Oct 12 15:42 EVNT.46676267._003736.pool.root.1
[2025-10-13 06:50:05] -rw-r--r--. 3 boincer umatlas 223226424 Oct 12 15:42 ATLAS.root_0
[2025-10-13 06:50:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 15:42 shared
[2025-10-13 06:50:05] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 15:42 input.tar.gz
[2025-10-13 06:50:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:42 start_atlas.sh
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas         0 Oct 12 15:42 boinc_lockfile
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 20:30 pandaJob.out
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas    975603 Oct 12 20:30 agis_schedconf.cvmfs.json
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas 196455178 Oct 13 06:47 HITS.46676269._077821.pool.root.1
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas       531 Oct 13 06:47 boinc_task_state.xml
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas      6657 Oct 13 06:48 init_data.xml
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas      1069 Oct 13 06:48 memory_monitor_summary.json
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas   1560580 Oct 13 06:49 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas    723494 Oct 13 06:49 log.46676269._077821.job.log.tgz.1
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas        96 Oct 13 06:49 pilot_heartbeat.json
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas      7845 Oct 13 06:49 heartbeat.json
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas        28 Oct 13 06:50 wrapper_checkpoint.txt
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 13 06:50 boinc_mmap_file
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas      4824 Oct 13 06:50 pilotlog.txt
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas   4124202 Oct 13 06:50 log.46676269._077821.job.log.1
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas       357 Oct 13 06:50 output.list
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas       620 Oct 13 06:50 runtime_log
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas   4864000 Oct 13 06:50 result.tar.gz
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas      8774 Oct 13 06:50 runtime_log.err
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas       784 Oct 13 06:50 nBCNDm169R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6rTMDm3MPMsn.diag
[2025-10-13 06:50:05] -rw-r--r--. 1 boincer umatlas     23383 Oct 13 06:50 stderr.txt
[2025-10-13 06:50:05] HITS file was successfully produced:
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas 196455178 Oct 13 06:47 shared/HITS.pool.root.1
[2025-10-13 06:50:05]  *** Contents of shared directory: ***
[2025-10-13 06:50:05] total 415180
[2025-10-13 06:50:05] -rw-r--r--. 3 boincer umatlas 223226424 Oct 12 15:42 ATLAS.root_0
[2025-10-13 06:50:05] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 15:42 input.tar.gz
[2025-10-13 06:50:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:42 start_atlas.sh
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas 196455178 Oct 13 06:47 HITS.pool.root.1
[2025-10-13 06:50:05] -rw-------. 1 boincer umatlas   4864000 Oct 13 06:50 result.tar.gz
06:50:06 (2606306): run_atlas exited; CPU time 53873.728648
06:50:06 (2606306): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN