Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:01:19 (12883): wrapper (7.7.26015): starting
09:01:19 (12883): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 09:01:19] Arguments: --nthreads 8
[2025-10-13 09:01:19] Threads: 8
[2025-10-13 09:01:19] Checking for CVMFS
[2025-10-13 09:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 09:01:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 09:01:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 09:01:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 09:01:22] 2.11.2.0 9859 221539 135816 151652 2 61 13215680 25165824 4632 130560 0 126028208 99.894 70751706 3632 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 09:01:22] CVMFS is ok
[2025-10-13 09:01:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 09:01:22] Checking for apptainer binary...
[2025-10-13 09:01:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 09:01:22] Running /usr/bin/apptainer --version
[2025-10-13 09:01:22] apptainer version 1.3.2-1.el7
[2025-10-13 09:01:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 09:01:32] cg-vwn461.simple-grid.lan
[2025-10-13 09:01:32] apptainer works
[2025-10-13 09:01:32] Set ATHENA_PROC_NUMBER=8
[2025-10-13 09:01:32] Set ATHENA_CORE_NUMBER=8
[2025-10-13 09:01:32] Starting ATLAS job with PandaID=6839928282
[2025-10-13 09:01:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 12:53:41]  *** The last 200 lines of the pilot log: ***
[2025-10-13 12:53:41] 2025-10-13 10:52:54,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,549 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 12:53:41] 2025-10-13 10:52:55,550 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,552 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6839928282/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,552 | INFO     | extracted standard info from prmon json
[2025-10-13 12:53:41] 2025-10-13 10:52:55,552 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 12:53:41] 2025-10-13 10:52:55,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 12:53:41] 2025-10-13 10:52:55,553 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 12:53:41] 2025-10-13 10:52:55,553 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 12:53:41] 2025-10-13 10:52:55,557 | INFO     | fitting pss+swap vs Time
[2025-10-13 12:53:41] 2025-10-13 10:52:55,558 | INFO     | sum of square deviations: 3081657780.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,559 | INFO     | sum of deviations: 6671520407.000017
[2025-10-13 12:53:41] 2025-10-13 10:52:55,559 | INFO     | mean x: 1760346103.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,560 | INFO     | mean y: 2497540.5255813953
[2025-10-13 12:53:41] 2025-10-13 10:52:55,560 | INFO     | -- intersect: -3808498289.630307
[2025-10-13 12:53:41] 2025-10-13 10:52:55,560 | INFO     | intersect: -3808498289.630307
[2025-10-13 12:53:41] 2025-10-13 10:52:55,560 | INFO     | chi2: 5.610413316393672
[2025-10-13 12:53:41] 2025-10-13 10:52:55,561 | INFO     | sum of square deviations: 2871616632.5
[2025-10-13 12:53:41] 2025-10-13 10:52:55,562 | INFO     | sum of deviations: 21224452971.99999
[2025-10-13 12:53:41] 2025-10-13 10:52:55,562 | INFO     | mean x: 1760345950.5
[2025-10-13 12:53:41] 2025-10-13 10:52:55,562 | INFO     | mean y: 2507912.438095238
[2025-10-13 12:53:41] 2025-10-13 10:52:55,562 | INFO     | -- intersect: -13008414025.394033
[2025-10-13 12:53:41] 2025-10-13 10:52:55,563 | INFO     | intersect: -13008414025.394033
[2025-10-13 12:53:41] 2025-10-13 10:52:55,563 | INFO     | chi2: 4.890991701373095
[2025-10-13 12:53:41] 2025-10-13 10:52:55,563 | INFO     | current chi2=4.890991701373095 (change=12.822969974750714 %)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,563 | INFO     | right removable region: 209
[2025-10-13 12:53:41] 2025-10-13 10:52:55,563 | INFO     | sum of square deviations: 2871616632.5
[2025-10-13 12:53:41] 2025-10-13 10:52:55,572 | INFO     | sum of deviations: -66784291114.5
[2025-10-13 12:53:41] 2025-10-13 10:52:55,572 | INFO     | mean x: 1760346255.5
[2025-10-13 12:53:41] 2025-10-13 10:52:55,572 | INFO     | mean y: 2550791.719047619
[2025-10-13 12:53:41] 2025-10-13 10:52:55,573 | INFO     | -- intersect: 40942373837.41663
[2025-10-13 12:53:41] 2025-10-13 10:52:55,573 | INFO     | intersect: 40942373837.41663
[2025-10-13 12:53:41] 2025-10-13 10:52:55,573 | INFO     | chi2: 1.1433317371744163
[2025-10-13 12:53:41] 2025-10-13 10:52:55,573 | INFO     | current chi2=1.1433317371744163 (change=79.62125653321134 %)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,573 | INFO     | sum of square deviations: 2671343110.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,575 | INFO     | sum of deviations: -76349257309.00003
[2025-10-13 12:53:41] 2025-10-13 10:52:55,575 | INFO     | mean x: 1760346408.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,575 | INFO     | mean y: 2558021.1951219514
[2025-10-13 12:53:41] 2025-10-13 10:52:55,575 | INFO     | -- intersect: 50314755040.830666
[2025-10-13 12:53:41] 2025-10-13 10:52:55,575 | INFO     | intersect: 50314755040.830666
[2025-10-13 12:53:41] 2025-10-13 10:52:55,576 | INFO     | chi2: 0.986601738481803
[2025-10-13 12:53:41] 2025-10-13 10:52:55,576 | INFO     | current chi2=0.986601738481803 (change=13.70818228836623 %)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,576 | INFO     | left removable region: 20
[2025-10-13 12:53:41] 2025-10-13 10:52:55,576 | INFO     | sum of square deviations: 2093397390.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,577 | INFO     | sum of deviations: -50775601327.00001
[2025-10-13 12:53:41] 2025-10-13 10:52:55,578 | INFO     | mean x: 1760346530.0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,578 | INFO     | mean y: 2562539.91005291
[2025-10-13 12:53:41] 2025-10-13 10:52:55,578 | INFO     | -- intersect: 42699975860.296326
[2025-10-13 12:53:41] 2025-10-13 10:52:55,578 | INFO     | intersect: 42699975860.296326
[2025-10-13 12:53:41] 2025-10-13 10:52:55,578 | INFO     | chi2: 0.19136354615160606
[2025-10-13 12:53:41] 2025-10-13 10:52:55,578 | INFO     | -- intersect: 42699975860.296326
[2025-10-13 12:53:41] 2025-10-13 10:52:55,579 | INFO     | current memory leak: -24.26 B/s (using 189 data points, chi2=0.19)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,579 | INFO     | could have reported an average CPU frequency of 2250 MHz (10 samples)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,579 | INFO     | ..............................
[2025-10-13 12:53:41] 2025-10-13 10:52:55,579 | INFO     | . Timing measurements:
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . get job = 0 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . initial setup = 5 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . payload setup = 112 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . stage-in = 0 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . payload execution = 13258 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . stage-out = 3 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | . log creation = 1 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,580 | INFO     | ..............................
[2025-10-13 12:53:41] 2025-10-13 10:52:55,584 | INFO     | time since job start (13668s) is within the limit (172800.0s)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | 
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | job summary report
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | --------------------------------------------------
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | PanDA job id: 6839928282
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | task id: 46676269
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | errors: (none)
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 12:53:41] 2025-10-13 10:52:55,757 | INFO     | pilot state: finished 
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | transexitcode: 0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | exeerrorcode: 0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | exeerrordiag: 
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | exitcode: 0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | exitmsg: OK
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | cpuconsumptiontime: 49901 s
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | nevents: 400
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | neventsw: 0
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | pid: 23215
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | pgrp: 23215
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | corecount: 8
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | event service: False
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | sizes: {0: 2348631, 1: 2348886, 12: 2348886, 23: 2348914, 33: 2348942, 44: 2348998, 55: 2349154, 66: 2349182, 76: 2349210, 87: 2349266, 94: 2349556, 98: 2349864, 1
[2025-10-13 12:53:41] 2025-10-13 10:52:55,758 | INFO     | --------------------------------------------------
[2025-10-13 12:53:41] 2025-10-13 10:52:55,759 | INFO     | 
[2025-10-13 12:53:41] 2025-10-13 10:52:55,759 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-10-13 12:53:41] 2025-10-13 10:52:56,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 12:53:41] 2025-10-13 10:52:56,217 | INFO     | job 6839928282 has completed (purged errors)
[2025-10-13 12:53:41] 2025-10-13 10:52:56,218 | INFO     | overall cleanup function is called
[2025-10-13 12:53:41] 2025-10-13 10:52:57,227 | INFO     | --- collectZombieJob: --- 10, [23215]
[2025-10-13 12:53:41] 2025-10-13 10:52:57,227 | INFO     | zombie collector waiting for pid 23215
[2025-10-13 12:53:41] 2025-10-13 10:52:57,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 12:53:41] 2025-10-13 10:52:57,227 | INFO     | collected zombie processes
[2025-10-13 12:53:41] 2025-10-13 10:52:57,227 | INFO     | will attempt to kill all subprocesses of pid=23215
[2025-10-13 12:53:41] 2025-10-13 10:52:57,319 | INFO     | process IDs to be killed: [23215] (in reverse order)
[2025-10-13 12:53:41] 2025-10-13 10:52:57,993 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 12:53:41] 2025-10-13 10:52:57,994 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 12:53:41] 2025-10-13 10:52:57,996 | INFO     | did not find any defunct processes belonging to 23215
[2025-10-13 12:53:41] 2025-10-13 10:52:57,999 | INFO     | did not find any defunct processes belonging to 23215
[2025-10-13 12:53:41] 2025-10-13 10:52:57,999 | INFO     | ready for new job
[2025-10-13 12:53:41] 2025-10-13 10:52:57,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 12:53:41] 2025-10-13 10:52:58,001 | INFO     | ***************************************
[2025-10-13 12:53:41] 2025-10-13 10:52:58,001 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 12:53:41] 2025-10-13 10:52:58,001 | INFO     | ***************************************
[2025-10-13 12:53:41] 2025-10-13 10:52:58,001 | INFO     | 
[2025-10-13 12:53:41] 2025-10-13 10:52:58,001 | INFO     | pilot is running in a VM
[2025-10-13 12:53:41] 2025-10-13 10:52:58,001 | INFO     | architecture information:
[2025-10-13 12:53:41] 2025-10-13 10:52:58,007 | INFO     | executing command: cat /etc/os-release
[2025-10-13 12:53:41] 2025-10-13 10:52:58,105 | INFO     | cat /etc/os-release:
[2025-10-13 12:53:41] NAME="CentOS Linux"
[2025-10-13 12:53:41] VERSION="7 (Core)"
[2025-10-13 12:53:41] ID="centos"
[2025-10-13 12:53:41] ID_LIKE="rhel fedora"
[2025-10-13 12:53:41] VERSION_ID="7"
[2025-10-13 12:53:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 12:53:41] ANSI_COLOR="0;31"
[2025-10-13 12:53:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 12:53:41] HOME_URL="https://www.centos.org/"
[2025-10-13 12:53:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 12:53:41] 
[2025-10-13 12:53:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 12:53:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 12:53:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 12:53:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 12:53:41] 
[2025-10-13 12:53:41] 2025-10-13 10:52:58,105 | INFO     | ***************************************
[2025-10-13 12:53:41] 2025-10-13 10:52:58,609 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-10-13 12:53:41] 2025-10-13 10:52:58,803 | INFO     | sufficient remaining disk space (495326330880 B)
[2025-10-13 12:53:41] 2025-10-13 10:52:58,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 12:53:41] 2025-10-13 10:52:58,804 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 12:53:41] 2025-10-13 10:52:58,804 | INFO     | update_server=False
[2025-10-13 12:53:41] 2025-10-13 10:52:58,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 12:53:41] 2025-10-13 10:52:58,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:53:41] 2025-10-13 10:52:58,805 | INFO     | aborting loop
[2025-10-13 12:53:41] 2025-10-13 10:52:58,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 12:53:41] 2025-10-13 10:52:58,812 | INFO     | all payload control threads have been joined
[2025-10-13 12:53:41] 2025-10-13 10:52:59,128 | INFO     | all job control threads have been joined
[2025-10-13 12:53:41] 2025-10-13 10:52:59,420 | INFO     | all data control threads have been joined
[2025-10-13 12:53:41] 2025-10-13 10:52:59,811 | INFO     | [job] job monitor thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:52:59,814 | INFO     | [job] retrieve thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:52:59,818 | INFO     | [payload] control thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,034 | INFO     | [payload] validate_post thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,136 | INFO     | [job] control thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,178 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,426 | INFO     | [data] control thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,523 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,648 | INFO     | [data] copytool_in thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 12:53:41] 2025-10-13 10:53:00,788 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,813 | INFO     | [data] copytool_out thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:00,910 | INFO     | [job] validate thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:01,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:01,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 12:53:41] 2025-10-13 10:53:01,362 | INFO     | [payload] failed_post thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:01,778 | INFO     | [job] queue monitor thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:05,355 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 12:53:41] 2025-10-13 10:53:28,783 | INFO     | PID=16648 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 12:53:41] 2025-10-13 10:53:28,783 | INFO     | .. there are 9 such processes running
[2025-10-13 12:53:41] 2025-10-13 10:53:28,785 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 12:53:41] 2025-10-13 10:53:28,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 12:53:41] 2025-10-13 10:53:28,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 12:53:41] 2025-10-13 10:53:30,322 | INFO     | [monitor] cgroup control has ended
[2025-10-13 12:53:41] 2025-10-13 10:53:31,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140146924013376)>', '<ExcThread(monitor, started 140146628343552)>']
[2025-10-13 12:53:41] 2025-10-13 10:53:31,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 12:53:41] 2025-10-13 10:53:31,809 | INFO     | [monitor] control thread has ended
[2025-10-13 12:53:41] 2025-10-13 10:53:36,114 | INFO     | all workflow threads have been joined
[2025-10-13 12:53:41] 2025-10-13 10:53:36,114 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 12:53:41] 2025-10-13 10:53:36,114 | INFO     | traces error code: 0
[2025-10-13 12:53:41] 2025-10-13 10:53:36,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 12:53:41] 2025-10-13 10:53:36,434 [wrapper] ==== pilot stdout END ====
[2025-10-13 12:53:41] 2025-10-13 10:53:36,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 12:53:41] 2025-10-13 10:53:36,499 [wrapper] pilotpid: 16648
[2025-10-13 12:53:41] 2025-10-13 10:53:36,527 [wrapper] Pilot exit status: 0
[2025-10-13 12:53:41] 2025-10-13 10:53:37,129 [wrapper] pandaids: 6839928282
[2025-10-13 12:53:41] 2025-10-13 10:53:38,028 [wrapper] cleanup supervisor_pilot 30006 16649
[2025-10-13 12:53:41] 2025-10-13 10:53:38,138 [wrapper] Test setup, not cleaning
[2025-10-13 12:53:41] 2025-10-13 10:53:38,236 [wrapper] apfmon messages muted
[2025-10-13 12:53:41] 2025-10-13 10:53:38,367 [wrapper] ==== wrapper stdout END ====
[2025-10-13 12:53:41] 2025-10-13 10:53:38,472 [wrapper] ==== wrapper stderr END ====
[2025-10-13 12:53:41]  *** Error codes and diagnostics ***
[2025-10-13 12:53:41]     "exeErrorCode": 0,
[2025-10-13 12:53:41]     "exeErrorDiag": "",
[2025-10-13 12:53:41]     "pilotErrorCode": 0,
[2025-10-13 12:53:41]     "pilotErrorDiag": "",
[2025-10-13 12:53:41]  *** Listing of results directory ***
[2025-10-13 12:53:41] total 409888
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc    557409 Oct 12 13:54 pilot3.tar.gz
[2025-10-13 12:53:41] -rwx------. 1 boinc boinc     36292 Oct 12 14:05 runpilot2-wrapper.sh
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc      5112 Oct 12 14:05 queuedata.json
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc       100 Oct 13 09:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 12:53:41] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 09:01 run_atlas
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc       105 Oct 13 09:01 job.xml
[2025-10-13 12:53:41] -rw-r--r--. 2 boinc boinc 218718124 Oct 13 09:01 EVNT.46676267._003727.pool.root.1
[2025-10-13 12:53:41] -rw-r--r--. 2 boinc boinc     15120 Oct 13 09:01 start_atlas.sh
[2025-10-13 12:53:41] drwxrwx--x. 2 boinc boinc        68 Oct 13 09:01 shared
[2025-10-13 12:53:41] -rw-r--r--. 2 boinc boinc    569679 Oct 13 09:01 input.tar.gz
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc      6389 Oct 13 09:01 init_data.xml
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc         0 Oct 13 09:01 boinc_lockfile
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc      2550 Oct 13 09:01 pandaJob.out
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc    972849 Oct 13 09:05 agis_schedconf.cvmfs.json
[2025-10-13 12:53:41] drwx------. 5 boinc boinc      4096 Oct 13 09:05 pilot3
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc 192545261 Oct 13 12:50 HITS.46676269._077721.pool.root.1
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc       531 Oct 13 12:50 boinc_task_state.xml
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc      1018 Oct 13 12:51 memory_monitor_summary.json
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc   1560580 Oct 13 12:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc    450840 Oct 13 12:51 log.46676269._077721.job.log.tgz.1
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc      7790 Oct 13 12:52 heartbeat.json
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc        95 Oct 13 12:53 pilot_heartbeat.json
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc      4885 Oct 13 12:53 pilotlog.txt
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc      8192 Oct 13 12:53 boinc_mmap_file
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc        28 Oct 13 12:53 wrapper_checkpoint.txt
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc   1835264 Oct 13 12:53 log.46676269._077721.job.log.1
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc       357 Oct 13 12:53 output.list
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc       620 Oct 13 12:53 runtime_log
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc   2304000 Oct 13 12:53 result.tar.gz
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc       657 Oct 13 12:53 uE9LDmz09R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbpTMDmqXU4Um.diag
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc      8717 Oct 13 12:53 runtime_log.err
[2025-10-13 12:53:41] -rw-r--r--. 1 boinc boinc     20817 Oct 13 12:53 stderr.txt
[2025-10-13 12:53:41] HITS file was successfully produced:
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc 192545261 Oct 13 12:50 shared/HITS.pool.root.1
[2025-10-13 12:53:41]  *** Contents of shared directory: ***
[2025-10-13 12:53:41] total 404456
[2025-10-13 12:53:41] -rw-r--r--. 2 boinc boinc 218718124 Oct 13 09:01 ATLAS.root_0
[2025-10-13 12:53:41] -rw-r--r--. 2 boinc boinc     15120 Oct 13 09:01 start_atlas.sh
[2025-10-13 12:53:41] -rw-r--r--. 2 boinc boinc    569679 Oct 13 09:01 input.tar.gz
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc 192545261 Oct 13 12:50 HITS.pool.root.1
[2025-10-13 12:53:41] -rw-------. 1 boinc boinc   2304000 Oct 13 12:53 result.tar.gz
12:53:42 (12883): run_atlas exited; CPU time 50063.358355
12:53:42 (12883): called boinc_finish(0)

</stderr_txt>
]]>

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