Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:12:44 (13759): wrapper (7.7.26015): starting
11:12:44 (13759): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:12:44] Arguments: --nthreads 8
[2025-10-12 11:12:44] Threads: 8
[2025-10-12 11:12:44] Checking for CVMFS
[2025-10-12 11:12:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:12:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:12:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:12:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:12:44] 2.11.2.0 2885 205948 76584 151623 1 59 12366945 20275201 1 130560 1 73697264 99.978 10516043 9974 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:12:44] CVMFS is ok
[2025-10-12 11:12:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:12:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:12:44] Further information can be found at the LHC@home message board.
[2025-10-12 11:12:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:12:44] Checking for apptainer binary...
[2025-10-12 11:12:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:12:44] Running /usr/bin/apptainer --version
[2025-10-12 11:12:44] apptainer version 1.3.2-1.el7
[2025-10-12 11:12:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:12:46] c-204-6.aglt2.org
[2025-10-12 11:12:46] apptainer works
[2025-10-12 11:12:46] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:12:46] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:12:46] Starting ATLAS job with PandaID=6839822790
[2025-10-12 11:12:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:18:23]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:18:23] 2025-10-12 17:17:34,582 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:18:23] 2025-10-12 17:17:34,583 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:18:23] 2025-10-12 17:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:18:23] 2025-10-12 17:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:18:23] 2025-10-12 17:17:34,586 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:18:23] 2025-10-12 17:17:34,586 | INFO     | sum of square deviations: 563026370.5
[2025-10-12 13:18:23] 2025-10-12 17:17:34,587 | INFO     | sum of deviations: 14591417160.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,587 | INFO     | mean x: 1760285706.5
[2025-10-12 13:18:23] 2025-10-12 17:17:34,587 | INFO     | mean y: 2504721.4426229508
[2025-10-12 13:18:23] 2025-10-12 17:17:34,587 | INFO     | -- intersect: -45617140130.213264
[2025-10-12 13:18:23] 2025-10-12 17:17:34,587 | INFO     | intersect: -45617140130.213264
[2025-10-12 13:18:23] 2025-10-12 17:17:34,588 | INFO     | chi2: 1.655050699957703
[2025-10-12 13:18:23] 2025-10-12 17:17:34,588 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,588 | INFO     | sum of deviations: 14583785450.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,588 | INFO     | mean x: 1760285554.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,589 | INFO     | mean y: 2504702.7863247865
[2025-10-12 13:18:23] 2025-10-12 17:17:34,589 | INFO     | -- intersect: -51692563090.1033
[2025-10-12 13:18:23] 2025-10-12 17:17:34,589 | INFO     | intersect: -51692563090.1033
[2025-10-12 13:18:23] 2025-10-12 17:17:34,589 | INFO     | chi2: 1.6559311416608362
[2025-10-12 13:18:23] 2025-10-12 17:17:34,589 | INFO     | current chi2=1.6559311416608362 (change=-0.05319726478201987 %)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,589 | INFO     | right removable region: 116
[2025-10-12 13:18:23] 2025-10-12 17:17:34,590 | INFO     | sum of square deviations: 496597218.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,590 | INFO     | sum of deviations: -6452281221.999999
[2025-10-12 13:18:23] 2025-10-12 17:17:34,590 | INFO     | mean x: 1760285859.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,590 | INFO     | mean y: 2552301.47008547
[2025-10-12 13:18:23] 2025-10-12 17:17:34,591 | INFO     | -- intersect: 22873923669.840977
[2025-10-12 13:18:23] 2025-10-12 17:17:34,591 | INFO     | intersect: 22873923669.840977
[2025-10-12 13:18:23] 2025-10-12 17:17:34,591 | INFO     | chi2: 0.042115886281750434
[2025-10-12 13:18:23] 2025-10-12 17:17:34,591 | INFO     | current chi2=0.042115886281750434 (change=97.45531141234363 %)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,591 | INFO     | sum of square deviations: 435610028.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,592 | INFO     | sum of deviations: -7905630926.999999
[2025-10-12 13:18:23] 2025-10-12 17:17:34,592 | INFO     | mean x: 1760286011.5
[2025-10-12 13:18:23] 2025-10-12 17:17:34,592 | INFO     | mean y: 2555828.7321428573
[2025-10-12 13:18:23] 2025-10-12 17:17:34,592 | INFO     | -- intersect: 31948954300.71561
[2025-10-12 13:18:23] 2025-10-12 17:17:34,592 | INFO     | intersect: 31948954300.71561
[2025-10-12 13:18:23] 2025-10-12 17:17:34,593 | INFO     | chi2: 0.015911043845296347
[2025-10-12 13:18:23] 2025-10-12 17:17:34,593 | INFO     | current chi2=0.015911043845296347 (change=62.22080252840153 %)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,593 | INFO     | sum of square deviations: 379832238.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,594 | INFO     | sum of deviations: -7562493544.000002
[2025-10-12 13:18:23] 2025-10-12 17:17:34,594 | INFO     | mean x: 1760286164.0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,594 | INFO     | mean y: 2554882.61682243
[2025-10-12 13:18:23] 2025-10-12 17:17:34,594 | INFO     | -- intersect: 35050008518.82589
[2025-10-12 13:18:23] 2025-10-12 17:17:34,594 | INFO     | intersect: 35050008518.82589
[2025-10-12 13:18:23] 2025-10-12 17:17:34,594 | INFO     | chi2: 0.014479860439339234
[2025-10-12 13:18:23] 2025-10-12 17:17:34,595 | INFO     | current chi2=0.014479860439339234 (change=8.994905801734697 %)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,595 | INFO     | left removable region: 30
[2025-10-12 13:18:23] 2025-10-12 17:17:34,595 | INFO     | sum of square deviations: 197203697.5
[2025-10-12 13:18:23] 2025-10-12 17:17:34,595 | INFO     | sum of deviations: -5336433903.000001
[2025-10-12 13:18:23] 2025-10-12 17:17:34,595 | INFO     | mean x: 1760286438.5
[2025-10-12 13:18:23] 2025-10-12 17:17:34,596 | INFO     | mean y: 2553063.2790697673
[2025-10-12 13:18:23] 2025-10-12 17:17:34,596 | INFO     | -- intersect: 47636813214.017494
[2025-10-12 13:18:23] 2025-10-12 17:17:34,596 | INFO     | intersect: 47636813214.017494
[2025-10-12 13:18:23] 2025-10-12 17:17:34,596 | INFO     | chi2: 0.011037238804445404
[2025-10-12 13:18:23] 2025-10-12 17:17:34,596 | INFO     | -- intersect: 47636813214.017494
[2025-10-12 13:18:23] 2025-10-12 17:17:34,596 | INFO     | current memory leak: -27.06 B/s (using 86 data points, chi2=0.01)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | could have reported an average CPU frequency of 1920 MHz (8 samples)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | ..............................
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | . Timing measurements:
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | . get job = 0 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | . initial setup = 2 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | . payload setup = 8 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | . stage-in = 0 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,597 | INFO     | . payload execution = 7431 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,598 | INFO     | . stage-out = 0 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,598 | INFO     | . log creation = 0 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,598 | INFO     | ..............................
[2025-10-12 13:18:23] 2025-10-12 17:17:34,934 | INFO     | 
[2025-10-12 13:18:23] 2025-10-12 17:17:34,934 | INFO     | job summary report
[2025-10-12 13:18:23] 2025-10-12 17:17:34,935 | INFO     | --------------------------------------------------
[2025-10-12 13:18:23] 2025-10-12 17:17:34,935 | INFO     | PanDA job id: 6839822790
[2025-10-12 13:18:23] 2025-10-12 17:17:34,935 | INFO     | task id: 46676269
[2025-10-12 13:18:23] 2025-10-12 17:17:34,935 | INFO     | errors: (none)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:18:23] 2025-10-12 17:17:34,936 | INFO     | pilot state: finished 
[2025-10-12 13:18:23] 2025-10-12 17:17:34,936 | INFO     | transexitcode: 0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,936 | INFO     | exeerrorcode: 0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,936 | INFO     | exeerrordiag: 
[2025-10-12 13:18:23] 2025-10-12 17:17:34,936 | INFO     | exitcode: 0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,936 | INFO     | exitmsg: OK
[2025-10-12 13:18:23] 2025-10-12 17:17:34,937 | INFO     | cpuconsumptiontime: 55560 s
[2025-10-12 13:18:23] 2025-10-12 17:17:34,937 | INFO     | nevents: 400
[2025-10-12 13:18:23] 2025-10-12 17:17:34,937 | INFO     | neventsw: 0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,937 | INFO     | pid: 23961
[2025-10-12 13:18:23] 2025-10-12 17:17:34,937 | INFO     | pgrp: 23961
[2025-10-12 13:18:23] 2025-10-12 17:17:34,937 | INFO     | corecount: 8
[2025-10-12 13:18:23] 2025-10-12 17:17:34,938 | INFO     | event service: False
[2025-10-12 13:18:23] 2025-10-12 17:17:34,938 | INFO     | sizes: {0: 2348686, 1: 2348885, 7: 2349147, 12: 2349175, 7444: 2376564, 7446: 2385746, 7453: 2385884}
[2025-10-12 13:18:23] 2025-10-12 17:17:34,938 | INFO     | --------------------------------------------------
[2025-10-12 13:18:23] 2025-10-12 17:17:34,938 | INFO     | 
[2025-10-12 13:18:23] 2025-10-12 17:17:34,938 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:18:23] 2025-10-12 17:17:34,971 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,972 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,972 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,972 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,972 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,972 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,972 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,973 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,973 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,973 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,974 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,974 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,974 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,974 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,974 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,975 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:18:23] 2025-10-12 17:17:34,975 | INFO     | job 6839822790 has completed (purged errors)
[2025-10-12 13:18:23] 2025-10-12 17:17:34,975 | INFO     | overall cleanup function is called
[2025-10-12 13:18:23] 2025-10-12 17:17:35,984 | INFO     | --- collectZombieJob: --- 10, [23961]
[2025-10-12 13:18:23] 2025-10-12 17:17:35,984 | INFO     | zombie collector waiting for pid 23961
[2025-10-12 13:18:23] 2025-10-12 17:17:35,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:18:23] 2025-10-12 17:17:35,991 | INFO     | collected zombie processes
[2025-10-12 13:18:23] 2025-10-12 17:17:35,992 | INFO     | will attempt to kill all subprocesses of pid=23961
[2025-10-12 13:18:23] 2025-10-12 17:17:36,079 | INFO     | process IDs to be killed: [23961] (in reverse order)
[2025-10-12 13:18:23] 2025-10-12 17:17:36,139 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:18:23] 2025-10-12 17:17:36,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:18:23] 2025-10-12 17:17:36,143 | INFO     | did not find any defunct processes belonging to 23961
[2025-10-12 13:18:23] 2025-10-12 17:17:36,146 | INFO     | did not find any defunct processes belonging to 23961
[2025-10-12 13:18:23] 2025-10-12 17:17:36,146 | INFO     | ready for new job
[2025-10-12 13:18:23] 2025-10-12 17:17:36,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:18:23] 2025-10-12 17:17:36,148 | INFO     | ***************************************
[2025-10-12 13:18:23] 2025-10-12 17:17:36,149 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:18:23] 2025-10-12 17:17:36,149 | INFO     | ***************************************
[2025-10-12 13:18:23] 2025-10-12 17:17:36,149 | INFO     | 
[2025-10-12 13:18:23] 2025-10-12 17:17:36,149 | INFO     | architecture information:
[2025-10-12 13:18:23] 2025-10-12 17:17:36,150 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:18:23] 2025-10-12 17:17:36,173 | INFO     | cat /etc/os-release:
[2025-10-12 13:18:23] NAME="CentOS Linux"
[2025-10-12 13:18:23] VERSION="7 (Core)"
[2025-10-12 13:18:23] ID="centos"
[2025-10-12 13:18:23] ID_LIKE="rhel fedora"
[2025-10-12 13:18:23] VERSION_ID="7"
[2025-10-12 13:18:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:18:23] ANSI_COLOR="0;31"
[2025-10-12 13:18:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:18:23] HOME_URL="https://www.centos.org/"
[2025-10-12 13:18:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:18:23] 
[2025-10-12 13:18:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:18:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:18:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:18:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:18:23] 
[2025-10-12 13:18:23] 2025-10-12 17:17:36,173 | INFO     | ***************************************
[2025-10-12 13:18:23] 2025-10-12 17:17:36,676 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:18:23] 2025-10-12 17:17:36,700 | INFO     | sufficient remaining disk space (18588106752 B)
[2025-10-12 13:18:23] 2025-10-12 17:17:36,700 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:18:23] 2025-10-12 17:17:36,701 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:18:23] 2025-10-12 17:17:36,701 | INFO     | update_server=False
[2025-10-12 13:18:23] 2025-10-12 17:17:36,701 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:18:23] 2025-10-12 17:17:36,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:18:23] 2025-10-12 17:17:36,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:18:23] 2025-10-12 17:17:36,702 | INFO     | aborting loop
[2025-10-12 13:18:23] 2025-10-12 17:17:36,703 | INFO     | all payload control threads have been joined
[2025-10-12 13:18:23] 2025-10-12 17:17:37,151 | INFO     | all job control threads have been joined
[2025-10-12 13:18:23] 2025-10-12 17:17:37,268 | INFO     | all data control threads have been joined
[2025-10-12 13:18:23] 2025-10-12 17:17:37,703 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:37,706 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:37,706 | INFO     | [payload] control thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:37,749 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:37,760 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:37,771 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,083 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,157 | INFO     | [job] control thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,274 | INFO     | [data] control thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,330 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,705 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,755 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:38,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:18:23] 2025-10-12 17:17:38,865 | INFO     | [job] validate thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:39,016 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:39,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:18:23] 2025-10-12 17:17:40,706 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:17:42,839 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:18:23] 2025-10-12 17:18:07,041 | INFO     | PID=17453 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:18:23] 2025-10-12 17:18:07,041 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:18:23] 2025-10-12 17:18:07,042 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:18:23] 2025-10-12 17:18:07,042 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:18:23] 2025-10-12 17:18:16,608 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:18:23] 2025-10-12 17:18:17,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139798810220352)>', '<ExcThread(monitor, started 139798090082048)>']
[2025-10-12 13:18:23] 2025-10-12 17:18:18,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:18:23] 2025-10-12 17:18:18,092 | INFO     | [monitor] control thread has ended
[2025-10-12 13:18:23] 2025-10-12 17:18:22,767 | INFO     | all workflow threads have been joined
[2025-10-12 13:18:23] 2025-10-12 17:18:22,767 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:18:23] 2025-10-12 17:18:22,767 | INFO     | traces error code: 0
[2025-10-12 13:18:23] 2025-10-12 17:18:22,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:18:23] 2025-10-12 17:18:22,888 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:18:23] 2025-10-12 17:18:22,892 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:18:23] 2025-10-12 17:18:22,897 [wrapper] pilotpid: 17453
[2025-10-12 13:18:23] 2025-10-12 17:18:22,902 [wrapper] Pilot exit status: 0
[2025-10-12 13:18:23] 2025-10-12 17:18:22,924 [wrapper] pandaids: 6839822790
[2025-10-12 13:18:23] 2025-10-12 17:18:22,981 [wrapper] cleanup supervisor_pilot 16825 17454
[2025-10-12 13:18:23] 2025-10-12 17:18:22,986 [wrapper] Test setup, not cleaning
[2025-10-12 13:18:23] 2025-10-12 17:18:22,990 [wrapper] apfmon messages muted
[2025-10-12 13:18:23] 2025-10-12 17:18:22,995 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:18:23] 2025-10-12 17:18:23,000 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:18:23]  *** Error codes and diagnostics ***
[2025-10-12 13:18:23]     "exeErrorCode": 0,
[2025-10-12 13:18:23]     "exeErrorDiag": "",
[2025-10-12 13:18:23]     "pilotErrorCode": 0,
[2025-10-12 13:18:23]     "pilotErrorDiag": "",
[2025-10-12 13:18:23]  *** Listing of results directory ***
[2025-10-12 13:18:23] total 411576
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 05:04 pilot3.tar.gz
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 05:31 queuedata.json
[2025-10-12 13:18:23] -rwx------ 1 boincer umatlas     36292 Oct 12 05:34 runpilot2-wrapper.sh
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas       100 Oct 12 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:18:23] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 11:12 run_atlas
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas       105 Oct 12 11:12 job.xml
[2025-10-12 13:18:23] -rw-r--r-- 2 boincer umatlas 221494999 Oct 12 11:12 EVNT.46676267._003583.pool.root.1
[2025-10-12 13:18:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:12 start_atlas.sh
[2025-10-12 13:18:23] drwxrwx--x 2 boincer umatlas      4096 Oct 12 11:12 shared
[2025-10-12 13:18:23] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 11:12 input.tar.gz
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas         0 Oct 12 11:12 boinc_lockfile
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 11:12 pandaJob.out
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas    975528 Oct 12 11:13 agis_schedconf.cvmfs.json
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas   1560580 Oct 12 11:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:18:23] drwx------ 5 boincer umatlas      4096 Oct 12 11:13 pilot3
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas 193205374 Oct 12 13:16 HITS.46676269._075402.pool.root.1
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:17 boinc_task_state.xml
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas      1049 Oct 12 13:17 memory_monitor_summary.json
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas    372828 Oct 12 13:17 log.46676269._075402.job.log.tgz.1
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas      7849 Oct 12 13:17 heartbeat.json
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas        95 Oct 12 13:18 pilot_heartbeat.json
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 13:18 init_data.xml
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:18 boinc_mmap_file
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:18 wrapper_checkpoint.txt
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas      4746 Oct 12 13:18 pilotlog.txt
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas   1053519 Oct 12 13:18 log.46676269._075402.job.log.1
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas       357 Oct 12 13:18 output.list
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:18 runtime_log
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas   1443840 Oct 12 13:18 result.tar.gz
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas       658 Oct 12 13:18 xUpKDmoe7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2LjNDmI8Nbbn.diag
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas      8698 Oct 12 13:18 runtime_log.err
[2025-10-12 13:18:23] -rw-r--r-- 1 boincer umatlas     20866 Oct 12 13:18 stderr.txt
[2025-10-12 13:18:23] HITS file was successfully produced:
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas 193205374 Oct 12 13:16 shared/HITS.pool.root.1
[2025-10-12 13:18:23]  *** Contents of shared directory: ***
[2025-10-12 13:18:23] total 406972
[2025-10-12 13:18:23] -rw-r--r-- 2 boincer umatlas 221494999 Oct 12 11:12 ATLAS.root_0
[2025-10-12 13:18:23] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 11:12 start_atlas.sh
[2025-10-12 13:18:23] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 11:12 input.tar.gz
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas 193205374 Oct 12 13:16 HITS.pool.root.1
[2025-10-12 13:18:23] -rw------- 1 boincer umatlas   1443840 Oct 12 13:18 result.tar.gz
13:18:24 (13759): run_atlas exited; CPU time 55507.463224
13:18:24 (13759): called boinc_finish(0)

</stderr_txt>
]]>

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