Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:15:00 (24066): wrapper (7.7.26015): starting
01:15:00 (24066): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:15:00] Arguments: --nthreads 8
[2025-10-13 01:15:00] Threads: 8
[2025-10-13 01:15:00] Checking for CVMFS
[2025-10-13 01:15:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:15:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:15:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:15:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:15:03] 2.11.2.0 23110 221051 136604 151641 2 16 17577201 25165824 4632 130560 0 108689664 99.870 69056581 3469 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 01:15:03] CVMFS is ok
[2025-10-13 01:15:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:15:03] Checking for apptainer binary...
[2025-10-13 01:15:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:15:03] Running /usr/bin/apptainer --version
[2025-10-13 01:15:03] apptainer version 1.3.2-1.el7
[2025-10-13 01:15:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:15:16] cg-vwn378.simple-grid.lan
[2025-10-13 01:15:16] apptainer works
[2025-10-13 01:15:16] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:15:16] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:15:16] Starting ATLAS job with PandaID=6838200053
[2025-10-13 01:15:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:30:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:30:44] 2025-10-13 03:29:42,040 | INFO     | sum of square deviations: 4127772278.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,042 | INFO     | sum of deviations: 39158967934.00003
[2025-10-13 05:30:44] 2025-10-13 03:29:42,042 | INFO     | mean x: 1760318839.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,042 | INFO     | mean y: 2467469.4135021097
[2025-10-13 05:30:44] 2025-10-13 03:29:42,042 | INFO     | -- intersect: -16697162337.54291
[2025-10-13 05:30:44] 2025-10-13 03:29:42,042 | INFO     | intersect: -16697162337.54291
[2025-10-13 05:30:44] 2025-10-13 03:29:42,043 | INFO     | chi2: 6.403645150956288
[2025-10-13 05:30:44] 2025-10-13 03:29:42,043 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,045 | INFO     | sum of deviations: 54141221457.50001
[2025-10-13 05:30:44] 2025-10-13 03:29:42,045 | INFO     | mean x: 1760318686.5
[2025-10-13 05:30:44] 2025-10-13 03:29:42,046 | INFO     | mean y: 2476242.202586207
[2025-10-13 05:30:44] 2025-10-13 03:29:42,046 | INFO     | -- intersect: -24611684867.80057
[2025-10-13 05:30:44] 2025-10-13 03:29:42,046 | INFO     | intersect: -24611684867.80057
[2025-10-13 05:30:44] 2025-10-13 03:29:42,046 | INFO     | chi2: 5.688281343320574
[2025-10-13 05:30:44] 2025-10-13 03:29:42,046 | INFO     | current chi2=5.688281343320574 (change=11.171196885087955 %)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,046 | INFO     | right removable region: 231
[2025-10-13 05:30:44] 2025-10-13 03:29:42,047 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,049 | INFO     | sum of deviations: -40897556170.5
[2025-10-13 05:30:44] 2025-10-13 03:29:42,049 | INFO     | mean x: 1760318991.5
[2025-10-13 05:30:44] 2025-10-13 03:29:42,049 | INFO     | mean y: 2515154.8060344825
[2025-10-13 05:30:44] 2025-10-13 03:29:42,049 | INFO     | -- intersect: 18595727201.0868
[2025-10-13 05:30:44] 2025-10-13 03:29:42,050 | INFO     | intersect: 18595727201.0868
[2025-10-13 05:30:44] 2025-10-13 03:29:42,050 | INFO     | chi2: 1.9135841608502622
[2025-10-13 05:30:44] 2025-10-13 03:29:42,050 | INFO     | current chi2=1.9135841608502622 (change=70.11726734164061 %)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,051 | INFO     | sum of square deviations: 3627000098.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,052 | INFO     | sum of deviations: -70785423397.00002
[2025-10-13 05:30:44] 2025-10-13 03:29:42,053 | INFO     | mean x: 1760319144.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,053 | INFO     | mean y: 2533615.334801762
[2025-10-13 05:30:44] 2025-10-13 03:29:42,053 | INFO     | -- intersect: 34357353729.78539
[2025-10-13 05:30:44] 2025-10-13 03:29:42,053 | INFO     | intersect: 34357353729.78539
[2025-10-13 05:30:44] 2025-10-13 03:29:42,053 | INFO     | chi2: 1.0075917746362684
[2025-10-13 05:30:44] 2025-10-13 03:29:42,054 | INFO     | current chi2=1.0075917746362684 (change=47.34531173227492 %)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,054 | INFO     | sum of square deviations: 3392567795.5
[2025-10-13 05:30:44] 2025-10-13 03:29:42,056 | INFO     | sum of deviations: -66790996478.500015
[2025-10-13 05:30:44] 2025-10-13 03:29:42,060 | INFO     | mean x: 1760319296.5
[2025-10-13 05:30:44] 2025-10-13 03:29:42,060 | INFO     | mean y: 2530990.9684684686
[2025-10-13 05:30:44] 2025-10-13 03:29:42,060 | INFO     | -- intersect: 34658722707.90924
[2025-10-13 05:30:44] 2025-10-13 03:29:42,060 | INFO     | intersect: 34658722707.90924
[2025-10-13 05:30:44] 2025-10-13 03:29:42,060 | INFO     | chi2: 0.9979543622064909
[2025-10-13 05:30:44] 2025-10-13 03:29:42,061 | INFO     | current chi2=0.9979543622064909 (change=0.9564798634106028 %)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,061 | INFO     | left removable region: 30
[2025-10-13 05:30:44] 2025-10-13 03:29:42,061 | INFO     | sum of square deviations: 2518000700.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,063 | INFO     | sum of deviations: -28934938250.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,063 | INFO     | mean x: 1760319571.0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,063 | INFO     | mean y: 2525816.810945274
[2025-10-13 05:30:44] 2025-10-13 03:29:42,063 | INFO     | -- intersect: 20230772015.13467
[2025-10-13 05:30:44] 2025-10-13 03:29:42,063 | INFO     | intersect: 20230772015.13467
[2025-10-13 05:30:44] 2025-10-13 03:29:42,064 | INFO     | chi2: 0.16521277626308103
[2025-10-13 05:30:44] 2025-10-13 03:29:42,064 | INFO     | -- intersect: 20230772015.13467
[2025-10-13 05:30:44] 2025-10-13 03:29:42,064 | INFO     | current memory leak: -11.49 B/s (using 201 data points, chi2=0.17)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | ..............................
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . Timing measurements:
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . get job = 0 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . initial setup = 10 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . payload setup = 131 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . stage-in = 0 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . payload execution = 14599 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . stage-out = 4 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,065 | INFO     | . log creation = 1 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,066 | INFO     | ..............................
[2025-10-13 05:30:44] 2025-10-13 03:29:42,137 | INFO     | time since job start (15035s) is within the limit (172800.0s)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,620 | INFO     | 
[2025-10-13 05:30:44] 2025-10-13 03:29:42,620 | INFO     | job summary report
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | --------------------------------------------------
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | PanDA job id: 6838200053
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | task id: 46676269
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | errors: (none)
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | pilot state: finished 
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | transexitcode: 0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | exeerrorcode: 0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | exeerrordiag: 
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | exitcode: 0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,621 | INFO     | exitmsg: OK
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | cpuconsumptiontime: 53976 s
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | nevents: 400
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | neventsw: 0
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | pid: 2038
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | pgrp: 2038
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | corecount: 8
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | event service: False
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | sizes: {0: 2348687, 1: 2348886, 12: 2348886, 23: 2348914, 34: 2348942, 44: 2348970, 55: 2349126, 66: 2349154, 76: 2349182, 87: 2349238, 95: 2349528, 98: 2349836, 1
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | --------------------------------------------------
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | 
[2025-10-13 05:30:44] 2025-10-13 03:29:42,622 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-10-13 05:30:44] 2025-10-13 03:29:43,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,101 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,101 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:30:44] 2025-10-13 03:29:43,103 | INFO     | job 6838200053 has completed (purged errors)
[2025-10-13 05:30:44] 2025-10-13 03:29:43,104 | INFO     | overall cleanup function is called
[2025-10-13 05:30:44] 2025-10-13 03:29:43,340 | INFO     | PID=27875 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:30:44] 2025-10-13 03:29:43,340 | INFO     | .. there are 9 such processes running
[2025-10-13 05:30:44] 2025-10-13 03:29:44,112 | INFO     | --- collectZombieJob: --- 10, [2038]
[2025-10-13 05:30:44] 2025-10-13 03:29:44,112 | INFO     | zombie collector waiting for pid 2038
[2025-10-13 05:30:44] 2025-10-13 03:29:44,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:30:44] 2025-10-13 03:29:44,113 | INFO     | collected zombie processes
[2025-10-13 05:30:44] 2025-10-13 03:29:44,113 | INFO     | will attempt to kill all subprocesses of pid=2038
[2025-10-13 05:30:44] 2025-10-13 03:29:44,213 | INFO     | process IDs to be killed: [2038] (in reverse order)
[2025-10-13 05:30:44] 2025-10-13 03:29:44,519 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:30:44] 2025-10-13 03:29:44,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:30:44] 2025-10-13 03:29:44,522 | INFO     | did not find any defunct processes belonging to 2038
[2025-10-13 05:30:44] 2025-10-13 03:29:44,525 | INFO     | did not find any defunct processes belonging to 2038
[2025-10-13 05:30:44] 2025-10-13 03:29:44,526 | INFO     | ready for new job
[2025-10-13 05:30:44] 2025-10-13 03:29:44,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:30:44] 2025-10-13 03:29:44,528 | INFO     | ***************************************
[2025-10-13 05:30:44] 2025-10-13 03:29:44,528 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:30:44] 2025-10-13 03:29:44,528 | INFO     | ***************************************
[2025-10-13 05:30:44] 2025-10-13 03:29:44,528 | INFO     | 
[2025-10-13 05:30:44] 2025-10-13 03:29:44,529 | INFO     | pilot is running in a VM
[2025-10-13 05:30:44] 2025-10-13 03:29:44,529 | INFO     | architecture information:
[2025-10-13 05:30:44] 2025-10-13 03:29:44,535 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:30:44] 2025-10-13 03:29:44,785 | INFO     | cat /etc/os-release:
[2025-10-13 05:30:44] NAME="CentOS Linux"
[2025-10-13 05:30:44] VERSION="7 (Core)"
[2025-10-13 05:30:44] ID="centos"
[2025-10-13 05:30:44] ID_LIKE="rhel fedora"
[2025-10-13 05:30:44] VERSION_ID="7"
[2025-10-13 05:30:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:30:44] ANSI_COLOR="0;31"
[2025-10-13 05:30:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:30:44] HOME_URL="https://www.centos.org/"
[2025-10-13 05:30:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:30:44] 
[2025-10-13 05:30:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:30:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:30:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:30:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:30:44] 
[2025-10-13 05:30:44] 2025-10-13 03:29:44,785 | INFO     | ***************************************
[2025-10-13 05:30:44] 2025-10-13 03:29:45,288 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-10-13 05:30:44] 2025-10-13 03:29:45,509 | INFO     | sufficient remaining disk space (495832793088 B)
[2025-10-13 05:30:44] 2025-10-13 03:29:45,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:30:44] 2025-10-13 03:29:45,509 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:30:44] 2025-10-13 03:29:45,509 | INFO     | update_server=False
[2025-10-13 05:30:44] 2025-10-13 03:29:45,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:30:44] 2025-10-13 03:29:45,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:30:44] 2025-10-13 03:29:45,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:30:44] 2025-10-13 03:29:45,511 | INFO     | aborting loop
[2025-10-13 05:30:44] 2025-10-13 03:29:45,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:30:44] 2025-10-13 03:29:45,521 | INFO     | all payload control threads have been joined
[2025-10-13 05:30:44] 2025-10-13 03:29:45,693 | INFO     | all job control threads have been joined
[2025-10-13 05:30:44] 2025-10-13 03:29:46,050 | INFO     | all data control threads have been joined
[2025-10-13 05:30:44] 2025-10-13 03:29:46,515 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:46,516 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:46,527 | INFO     | [payload] control thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:46,699 | INFO     | [job] control thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:46,812 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,055 | INFO     | [data] control thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:30:44] 2025-10-13 03:29:47,474 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,525 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,618 | INFO     | [job] validate thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,670 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,720 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,729 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:47,757 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:48,050 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:48,239 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:29:49,518 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:30:44] 2025-10-13 03:30:15,596 | INFO     | PID=27875 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:30:44] 2025-10-13 03:30:15,596 | INFO     | .. there are 9 such processes running
[2025-10-13 05:30:44] 2025-10-13 03:30:15,598 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:30:44] 2025-10-13 03:30:15,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:30:44] 2025-10-13 03:30:15,598 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:30:44] 2025-10-13 03:30:32,761 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:30:44] 2025-10-13 03:30:34,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041907578688)>', '<ExcThread(monitor, started 140041468753664)>']
[2025-10-13 05:30:44] 2025-10-13 03:30:34,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:30:44] 2025-10-13 03:30:34,711 | INFO     | [monitor] control thread has ended
[2025-10-13 05:30:44] 2025-10-13 03:30:39,308 | INFO     | all workflow threads have been joined
[2025-10-13 05:30:44] 2025-10-13 03:30:39,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:30:44] 2025-10-13 03:30:39,309 | INFO     | traces error code: 0
[2025-10-13 05:30:44] 2025-10-13 03:30:39,309 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:30:44] 2025-10-13 03:30:39,581 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:30:44] 2025-10-13 03:30:39,632 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:30:44] 2025-10-13 03:30:39,689 [wrapper] pilotpid: 27875
[2025-10-13 05:30:44] 2025-10-13 03:30:39,801 [wrapper] Pilot exit status: 0
[2025-10-13 05:30:44] 2025-10-13 03:30:40,296 [wrapper] pandaids: 6838200053
[2025-10-13 05:30:44] 2025-10-13 03:30:41,330 [wrapper] cleanup supervisor_pilot 11370 27876
[2025-10-13 05:30:44] 2025-10-13 03:30:41,437 [wrapper] Test setup, not cleaning
[2025-10-13 05:30:44] 2025-10-13 03:30:41,524 [wrapper] apfmon messages muted
[2025-10-13 05:30:44] 2025-10-13 03:30:41,631 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:30:44] 2025-10-13 03:30:41,672 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:30:44]  *** Error codes and diagnostics ***
[2025-10-13 05:30:44]     "exeErrorCode": 0,
[2025-10-13 05:30:44]     "exeErrorDiag": "",
[2025-10-13 05:30:44]     "pilotErrorCode": 0,
[2025-10-13 05:30:44]     "pilotErrorDiag": "",
[2025-10-13 05:30:44]  *** Listing of results directory ***
[2025-10-13 05:30:44] total 416812
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc    557409 Oct 11 09:43 pilot3.tar.gz
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc      5112 Oct 11 09:48 queuedata.json
[2025-10-13 05:30:44] -rwx------. 1 boinc boinc     36292 Oct 11 09:49 runpilot2-wrapper.sh
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc       100 Oct 13 01:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:30:44] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 01:15 run_atlas
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc       105 Oct 13 01:15 job.xml
[2025-10-13 05:30:44] -rw-r--r--. 2 boinc boinc 221364936 Oct 13 01:15 EVNT.46676267._002159.pool.root.1
[2025-10-13 05:30:44] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:15 start_atlas.sh
[2025-10-13 05:30:44] drwxrwx--x. 2 boinc boinc        68 Oct 13 01:15 shared
[2025-10-13 05:30:44] -rw-r--r--. 2 boinc boinc    569685 Oct 13 01:15 input.tar.gz
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc      6392 Oct 13 01:15 init_data.xml
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc         0 Oct 13 01:15 boinc_lockfile
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc      2550 Oct 13 01:15 pandaJob.out
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc    975603 Oct 13 01:18 agis_schedconf.cvmfs.json
[2025-10-13 05:30:44] drwx------. 5 boinc boinc      4096 Oct 13 01:19 pilot3
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc 196601432 Oct 13 05:26 HITS.46676269._053804.pool.root.1
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc       531 Oct 13 05:27 boinc_task_state.xml
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc      1027 Oct 13 05:27 memory_monitor_summary.json
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc   1560580 Oct 13 05:27 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc    468311 Oct 13 05:27 log.46676269._053804.job.log.tgz.1
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc      7786 Oct 13 05:29 heartbeat.json
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc        95 Oct 13 05:30 pilot_heartbeat.json
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc        28 Oct 13 05:30 wrapper_checkpoint.txt
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:30 boinc_mmap_file
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc      4885 Oct 13 05:30 pilotlog.txt
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc   2007340 Oct 13 05:30 log.46676269._053804.job.log.1
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc       357 Oct 13 05:30 output.list
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:30 runtime_log
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc   2498560 Oct 13 05:30 result.tar.gz
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc       657 Oct 13 05:30 SSOMDmPXjR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBofNDmMXbSOm.diag
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc      8717 Oct 13 05:30 runtime_log.err
[2025-10-13 05:30:44] -rw-r--r--. 1 boinc boinc     20756 Oct 13 05:30 stderr.txt
[2025-10-13 05:30:44] HITS file was successfully produced:
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc 196601432 Oct 13 05:26 shared/HITS.pool.root.1
[2025-10-13 05:30:44]  *** Contents of shared directory: ***
[2025-10-13 05:30:44] total 411192
[2025-10-13 05:30:44] -rw-r--r--. 2 boinc boinc 221364936 Oct 13 01:15 ATLAS.root_0
[2025-10-13 05:30:44] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:15 start_atlas.sh
[2025-10-13 05:30:44] -rw-r--r--. 2 boinc boinc    569685 Oct 13 01:15 input.tar.gz
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc 196601432 Oct 13 05:26 HITS.pool.root.1
[2025-10-13 05:30:44] -rw-------. 1 boinc boinc   2498560 Oct 13 05:30 result.tar.gz
05:30:45 (24066): run_atlas exited; CPU time 54189.181205
05:30:45 (24066): called boinc_finish(0)

</stderr_txt>
]]>

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