Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:14:18 (3039177): wrapper (7.7.26015): starting
07:14:18 (3039177): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 07:14:18] Arguments: --nthreads 3
[2025-10-13 07:14:18] Threads: 3
[2025-10-13 07:14:18] Checking for CVMFS
[2025-10-13 07:14:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 07:14:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 07:14:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 07:14:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 07:14:18] 2.9.2.0 1471922 5234 85092 151650 2 56 4411828 36864001 0 130560 0 4136787 99.991 181049 868 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 07:14:18] CVMFS is ok
[2025-10-13 07:14:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 07:14:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 07:14:18] Further information can be found at the LHC@home message board.
[2025-10-13 07:14:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 07:14:18] Checking for apptainer binary...
[2025-10-13 07:14:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 07:14:18] Running /usr/bin/apptainer --version
[2025-10-13 07:14:18] apptainer version 1.4.1-1.1
[2025-10-13 07:14:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 07:14:18] belleA265a
[2025-10-13 07:14:18] apptainer works
[2025-10-13 07:14:18] Set ATHENA_PROC_NUMBER=3
[2025-10-13 07:14:18] Set ATHENA_CORE_NUMBER=3
[2025-10-13 07:14:19] Starting ATLAS job with PandaID=6840082128
[2025-10-13 07:14:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 08:36:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 08:36:44]  scope=mc23_13p6TeV
[2025-10-13 08:36:44]  status=None
[2025-10-13 08:36:44]  status_code=0
[2025-10-13 08:36:44]  storage_token=
[2025-10-13 08:36:44]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6840082128/log.46676269._079943.job.log.tgz.1
[2025-10-13 08:36:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/f8/log.46676269._079943.job.log.tgz.1
[2025-10-13 08:36:44]  workdir=None
[2025-10-13 08:36:44] ]
[2025-10-13 08:36:44] 2025-10-13 06:36:03,626 | INFO     | transferring file log.46676269._079943.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6840082128/log.46676269._079943.job.log.tgz.1 to /local/data/boinc/
[2025-10-13 08:36:44] 2025-10-13 06:36:03,627 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6840082128/log.46676269._079943.job.log.tgz.1 /local/data/boinc/slots/0/log.46676269._0799
[2025-10-13 08:36:44] 2025-10-13 06:36:03,638 | INFO     | adding to output.list: log.46676269._079943.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/f8/log.46676269._079943.job.log.tg
[2025-10-13 08:36:44] 2025-10-13 06:36:03,638 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 08:36:44] 2025-10-13 06:36:03,638 | INFO     | summary of transferred files:
[2025-10-13 08:36:44] 2025-10-13 06:36:03,639 | INFO     |  -- lfn=log.46676269._079943.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 08:36:44] 2025-10-13 06:36:03,639 | INFO     | stage-out finished correctly
[2025-10-13 08:36:44] 2025-10-13 06:36:04,964 | INFO     | time since job start (4900s) is within the limit (172800.0s)
[2025-10-13 08:36:44] 2025-10-13 06:36:05,763 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 08:36:44] 2025-10-13 06:36:05,795 | INFO     | job 6840082128 has state=finished
[2025-10-13 08:36:44] 2025-10-13 06:36:05,795 | INFO     | preparing for final server update for job 6840082128 in state='finished'
[2025-10-13 08:36:44] 2025-10-13 06:36:05,795 | INFO     | this job has now completed (state=finished)
[2025-10-13 08:36:44] 2025-10-13 06:36:05,796 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 08:36:44] 2025-10-13 06:36:05,796 | INFO     | log transfer has been attempted: DONE
[2025-10-13 08:36:44] 2025-10-13 06:36:05,796 | INFO     | job 6840082128 has finished - writing final server update
[2025-10-13 08:36:44] 2025-10-13 06:36:05,796 | INFO     | total number of processed events: 400 (read)
[2025-10-13 08:36:44] 2025-10-13 06:36:05,796 | INFO     | executing command: lscpu
[2025-10-13 08:36:44] 2025-10-13 06:36:05,809 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 08:36:44] 2025-10-13 06:36:06,970 | INFO     | time since job start (4902s) is within the limit (172800.0s)
[2025-10-13 08:36:44] 2025-10-13 06:36:07,192 | WARNING  | process 3049323 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 08:36:44] 2025-10-13 06:36:07,192 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840082128/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:36:44] 2025-10-13 06:36:07,241 | INFO     | number of running child processes to parent process 3049323: 1
[2025-10-13 08:36:44] 2025-10-13 06:36:07,241 | INFO     | maximum number of monitored processes: 6
[2025-10-13 08:36:44] 2025-10-13 06:36:08,975 | INFO     | time since job start (4904s) is within the limit (172800.0s)
[2025-10-13 08:36:44] 2025-10-13 06:36:09,745 | INFO     | monitor loop #377: job 0:6840082128 is in state 'finished'
[2025-10-13 08:36:44] 2025-10-13 06:36:09,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 08:36:44] 2025-10-13 06:36:10,981 | INFO     | time since job start (4906s) is within the limit (172800.0s)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,465 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 08:36:44] 2025-10-13 06:36:11,466 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3593.6254166666663
[2025-10-13 08:36:44] 2025-10-13 06:36:11,467 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6840082128/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,467 | INFO     | extracted standard info from prmon json
[2025-10-13 08:36:44] 2025-10-13 06:36:11,467 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 08:36:44] 2025-10-13 06:36:11,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 08:36:44] 2025-10-13 06:36:11,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 08:36:44] 2025-10-13 06:36:11,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | fitting pss+swap vs Time
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | sum of square deviations: 120605052.0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | sum of deviations: -2160884130.0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | mean x: 1760334985.0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | mean y: 2600218.5616438356
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | -- intersect: 31542571965.104137
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | intersect: 31542571965.104137
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | chi2: 0.016922661226571687
[2025-10-13 08:36:44] 2025-10-13 06:36:11,468 | INFO     | -- intersect: 31542571965.104137
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | current memory leak: -17.92 B/s (using 73 data points, chi2=0.02)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | could have reported an average CPU frequency of 3872 MHz (6 samples)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | ..............................
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . Timing measurements:
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . get job = 0 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . initial setup = 1 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . payload setup = 2 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . stage-in = 0 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . payload execution = 4878 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . stage-out = 0 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | . log creation = 0 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,469 | INFO     | ..............................
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | 
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | job summary report
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | --------------------------------------------------
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | PanDA job id: 6840082128
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | task id: 46676269
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | errors: (none)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | pilot state: finished 
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | transexitcode: 0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | exeerrorcode: 0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | exeerrordiag: 
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | exitcode: 0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | exitmsg: OK
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | cpuconsumptiontime: 14018 s
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | nevents: 400
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | neventsw: 0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | pid: 3049323
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | pgrp: 3049323
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | corecount: 3
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | event service: False
[2025-10-13 08:36:44] 2025-10-13 06:36:11,500 | INFO     | sizes: {0: 2348860, 2: 2349122, 10: 2349150, 4884: 2375594, 4886: 2384598, 4888: 2384654, 4893: 2384976}
[2025-10-13 08:36:44] 2025-10-13 06:36:11,501 | INFO     | --------------------------------------------------
[2025-10-13 08:36:44] 2025-10-13 06:36:11,501 | INFO     | 
[2025-10-13 08:36:44] 2025-10-13 06:36:11,501 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | job 6840082128 has completed (purged errors)
[2025-10-13 08:36:44] 2025-10-13 06:36:11,514 | INFO     | overall cleanup function is called
[2025-10-13 08:36:44] 2025-10-13 06:36:12,040 | INFO     | PID=3042895 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:36:44] 2025-10-13 06:36:12,520 | INFO     | --- collectZombieJob: --- 10, [3049323]
[2025-10-13 08:36:44] 2025-10-13 06:36:12,520 | INFO     | zombie collector waiting for pid 3049323
[2025-10-13 08:36:44] 2025-10-13 06:36:12,521 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 08:36:44] 2025-10-13 06:36:12,521 | INFO     | collected zombie processes
[2025-10-13 08:36:44] 2025-10-13 06:36:12,521 | INFO     | will attempt to kill all subprocesses of pid=3049323
[2025-10-13 08:36:44] 2025-10-13 06:36:12,562 | INFO     | process IDs to be killed: [3049323] (in reverse order)
[2025-10-13 08:36:44] 2025-10-13 06:36:12,585 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 08:36:44] 2025-10-13 06:36:12,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 08:36:44] 2025-10-13 06:36:12,586 | INFO     | did not find any defunct processes belonging to 3049323
[2025-10-13 08:36:44] 2025-10-13 06:36:12,587 | INFO     | did not find any defunct processes belonging to 3049323
[2025-10-13 08:36:44] 2025-10-13 06:36:12,587 | INFO     | ready for new job
[2025-10-13 08:36:44] 2025-10-13 06:36:12,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 08:36:44] 2025-10-13 06:36:12,588 | INFO     | ***************************************
[2025-10-13 08:36:44] 2025-10-13 06:36:12,588 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 08:36:44] 2025-10-13 06:36:12,588 | INFO     | ***************************************
[2025-10-13 08:36:44] 2025-10-13 06:36:12,588 | INFO     | 
[2025-10-13 08:36:44] 2025-10-13 06:36:12,589 | INFO     | architecture information:
[2025-10-13 08:36:44] 2025-10-13 06:36:12,589 | INFO     | executing command: cat /etc/os-release
[2025-10-13 08:36:44] 2025-10-13 06:36:12,597 | INFO     | cat /etc/os-release:
[2025-10-13 08:36:44] NAME="CentOS Linux"
[2025-10-13 08:36:44] VERSION="7 (Core)"
[2025-10-13 08:36:44] ID="centos"
[2025-10-13 08:36:44] ID_LIKE="rhel fedora"
[2025-10-13 08:36:44] VERSION_ID="7"
[2025-10-13 08:36:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 08:36:44] ANSI_COLOR="0;31"
[2025-10-13 08:36:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 08:36:44] HOME_URL="https://www.centos.org/"
[2025-10-13 08:36:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 08:36:44] 
[2025-10-13 08:36:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 08:36:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 08:36:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 08:36:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 08:36:44] 
[2025-10-13 08:36:44] 2025-10-13 06:36:12,598 | INFO     | ***************************************
[2025-10-13 08:36:44] 2025-10-13 06:36:13,101 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 08:36:44] 2025-10-13 06:36:13,113 | INFO     | sufficient remaining disk space (355381280768 B)
[2025-10-13 08:36:44] 2025-10-13 06:36:13,113 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 08:36:44] 2025-10-13 06:36:13,114 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 08:36:44] 2025-10-13 06:36:13,114 | INFO     | update_server=False
[2025-10-13 08:36:44] 2025-10-13 06:36:13,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 08:36:44] 2025-10-13 06:36:13,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:36:44] 2025-10-13 06:36:13,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 08:36:44] 2025-10-13 06:36:13,250 | INFO     | aborting loop
[2025-10-13 08:36:44] 2025-10-13 06:36:14,090 | INFO     | all payload control threads have been joined
[2025-10-13 08:36:44] 2025-10-13 06:36:14,119 | INFO     | [job] queue monitor thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,120 | INFO     | [job] retrieve thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,173 | INFO     | all data control threads have been joined
[2025-10-13 08:36:44] 2025-10-13 06:36:14,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 08:36:44] 2025-10-13 06:36:14,256 | INFO     | [job] job monitor thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,312 | INFO     | [payload] validate_post thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,375 | INFO     | all job control threads have been joined
[2025-10-13 08:36:44] 2025-10-13 06:36:14,646 | INFO     | [job] validate thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,736 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,752 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:14,997 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:15,096 | INFO     | [payload] control thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:15,179 | INFO     | [data] control thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:15,381 | INFO     | [job] control thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:15,406 | INFO     | [payload] failed_post thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:15,525 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:15,604 | INFO     | [data] copytool_in thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:16,188 | INFO     | [data] copytool_out thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:16,306 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 08:36:44] 2025-10-13 06:36:20,313 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 08:36:44] 2025-10-13 06:36:29,936 | INFO     | [monitor] cgroup control has ended
[2025-10-13 08:36:44] 2025-10-13 06:36:30,941 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683192526656)>', '<ExcThread(monitor, started 139682704766720)>']
[2025-10-13 08:36:44] 2025-10-13 06:36:35,967 | INFO     | all workflow threads have been joined
[2025-10-13 08:36:44] 2025-10-13 06:36:35,967 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 08:36:44] 2025-10-13 06:36:35,968 | INFO     | traces error code: 0
[2025-10-13 08:36:44] 2025-10-13 06:36:35,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | INFO     | PID=3042895 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 08:36:44] 2025-10-13 06:36:44,670 | INFO     | [monitor] control thread has ended
[2025-10-13 08:36:44] 2025-10-13 06:36:44,725 [wrapper] ==== pilot stdout END ====
[2025-10-13 08:36:44] 2025-10-13 06:36:44,727 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 08:36:44] 2025-10-13 06:36:44,730 [wrapper] pilotpid: 3042895
[2025-10-13 08:36:44] 2025-10-13 06:36:44,732 [wrapper] Pilot exit status: 0
[2025-10-13 08:36:44] 2025-10-13 06:36:44,739 [wrapper] pandaids: 6840082128
[2025-10-13 08:36:44] 2025-10-13 06:36:44,756 [wrapper] cleanup supervisor_pilot 3061141 3042896
[2025-10-13 08:36:44] 2025-10-13 06:36:44,758 [wrapper] Test setup, not cleaning
[2025-10-13 08:36:44] 2025-10-13 06:36:44,761 [wrapper] apfmon messages muted
[2025-10-13 08:36:44] 2025-10-13 06:36:44,763 [wrapper] ==== wrapper stdout END ====
[2025-10-13 08:36:44] 2025-10-13 06:36:44,765 [wrapper] ==== wrapper stderr END ====
[2025-10-13 08:36:44]  *** Error codes and diagnostics ***
[2025-10-13 08:36:44]     "exeErrorCode": 0,
[2025-10-13 08:36:44]     "exeErrorDiag": "",
[2025-10-13 08:36:44]     "pilotErrorCode": 0,
[2025-10-13 08:36:44]     "pilotErrorDiag": "",
[2025-10-13 08:36:44]  *** Listing of results directory ***
[2025-10-13 08:36:44] total 413512
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:45 pilot3.tar.gz
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:50 queuedata.json
[2025-10-13 08:36:44] -rwx------ 1 boinc boinc     36292 Oct 12 15:51 runpilot2-wrapper.sh
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 07:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 08:36:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 07:14 run_atlas
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 07:14 job.xml
[2025-10-13 08:36:44] -rw-r--r-- 2 boinc boinc 222805197 Oct 13 07:14 EVNT.46676267._004040.pool.root.1
[2025-10-13 08:36:44] -rw-r--r-- 2 boinc boinc    569681 Oct 13 07:14 input.tar.gz
[2025-10-13 08:36:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:14 start_atlas.sh
[2025-10-13 08:36:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 07:14 shared
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:14 boinc_setup_complete
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc      6441 Oct 13 07:14 init_data.xml
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 07:14 boinc_lockfile
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc      2550 Oct 13 07:14 pandaJob.out
[2025-10-13 08:36:44] -rw------- 1 boinc boinc    973230 Oct 13 07:14 agis_schedconf.cvmfs.json
[2025-10-13 08:36:44] -rw------- 1 boinc boinc   1560580 Oct 13 07:14 agis_ddmendpoints.agis.ALL.json
[2025-10-13 08:36:44] drwx------ 5 boinc boinc      4096 Oct 13 07:14 pilot3
[2025-10-13 08:36:44] -rw------- 1 boinc boinc 194802539 Oct 13 08:35 HITS.46676269._079943.pool.root.1
[2025-10-13 08:36:44] -rw------- 1 boinc boinc        95 Oct 13 08:35 pilot_heartbeat.json
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 08:35 boinc_task_state.xml
[2025-10-13 08:36:44] -rw------- 1 boinc boinc      1018 Oct 13 08:35 memory_monitor_summary.json
[2025-10-13 08:36:44] -rw------- 1 boinc boinc    243246 Oct 13 08:36 log.46676269._079943.job.log.tgz.1
[2025-10-13 08:36:44] -rw------- 1 boinc boinc      7778 Oct 13 08:36 heartbeat.json
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 08:36 boinc_mmap_file
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 08:36 wrapper_checkpoint.txt
[2025-10-13 08:36:44] -rw------- 1 boinc boinc       817 Oct 13 08:36 pilotlog.txt
[2025-10-13 08:36:44] -rw------- 1 boinc boinc    721810 Oct 13 08:36 log.46676269._079943.job.log.1
[2025-10-13 08:36:44] -rw------- 1 boinc boinc       357 Oct 13 08:36 output.list
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 08:36 runtime_log
[2025-10-13 08:36:44] -rw------- 1 boinc boinc    983040 Oct 13 08:36 result.tar.gz
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc      8797 Oct 13 08:36 runtime_log.err
[2025-10-13 08:36:44] -rw------- 1 boinc boinc       662 Oct 13 08:36 NR2NDmLfBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmz6jNDmPlN8zm.diag
[2025-10-13 08:36:44] -rw-r--r-- 1 boinc boinc     22023 Oct 13 08:36 stderr.txt
[2025-10-13 08:36:44] HITS file was successfully produced:
[2025-10-13 08:36:44] -rw------- 1 boinc boinc 194802539 Oct 13 08:35 shared/HITS.pool.root.1
[2025-10-13 08:36:44]  *** Contents of shared directory: ***
[2025-10-13 08:36:44] total 409368
[2025-10-13 08:36:44] -rw-r--r-- 2 boinc boinc 222805197 Oct 13 07:14 ATLAS.root_0
[2025-10-13 08:36:44] -rw-r--r-- 2 boinc boinc    569681 Oct 13 07:14 input.tar.gz
[2025-10-13 08:36:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 07:14 start_atlas.sh
[2025-10-13 08:36:44] -rw------- 1 boinc boinc 194802539 Oct 13 08:35 HITS.pool.root.1
[2025-10-13 08:36:44] -rw------- 1 boinc boinc    983040 Oct 13 08:36 result.tar.gz
08:36:46 (3039177): run_atlas exited; CPU time 14034.777304
08:36:46 (3039177): called boinc_finish(0)

</stderr_txt>
]]>

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