Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:34:32 (17951): wrapper (7.7.26015): starting
21:34:32 (17951): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:34:32] Arguments: --nthreads 8
[2025-10-12 21:34:32] Threads: 8
[2025-10-12 21:34:32] Checking for CVMFS
[2025-10-12 21:34:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:34:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:34:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:34:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:34:35] 2.11.2.0 7179 220953 139264 151635 2 60 24661157 25165825 4632 130560 0 118343593 99.876 70064222 3412 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 21:34:35] CVMFS is ok
[2025-10-12 21:34:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:34:35] Checking for apptainer binary...
[2025-10-12 21:34:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 21:34:35] Running /usr/bin/apptainer --version
[2025-10-12 21:34:35] apptainer version 1.3.2-1.el7
[2025-10-12 21:34:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:35:00] cg-vwn286.simple-grid.lan
[2025-10-12 21:35:00] apptainer works
[2025-10-12 21:35:00] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:35:00] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:35:01] Starting ATLAS job with PandaID=6839871043
[2025-10-12 21:35:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:45:59]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:45:59] 2025-10-12 23:44:53,479 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 01:45:59] 2025-10-12 23:44:53,481 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6839871043/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,481 | INFO     | extracted standard info from prmon json
[2025-10-13 01:45:59] 2025-10-12 23:44:53,482 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 01:45:59] 2025-10-12 23:44:53,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 01:45:59] 2025-10-12 23:44:53,482 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 01:45:59] 2025-10-12 23:44:53,482 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:45:59] 2025-10-12 23:44:53,487 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:45:59] 2025-10-12 23:44:53,487 | INFO     | sum of square deviations: 3972995422.5
[2025-10-13 01:45:59] 2025-10-12 23:44:53,489 | INFO     | sum of deviations: 54456909724.99999
[2025-10-13 01:45:59] 2025-10-12 23:44:53,490 | INFO     | mean x: 1760305466.5
[2025-10-13 01:45:59] 2025-10-12 23:44:53,490 | INFO     | mean y: 2452713.769230769
[2025-10-13 01:45:59] 2025-10-12 23:44:53,490 | INFO     | -- intersect: -24125638482.79557
[2025-10-13 01:45:59] 2025-10-12 23:44:53,490 | INFO     | intersect: -24125638482.79557
[2025-10-13 01:45:59] 2025-10-12 23:44:53,490 | INFO     | chi2: 5.1879022842348395
[2025-10-13 01:45:59] 2025-10-12 23:44:53,491 | INFO     | sum of square deviations: 3723716330.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,493 | INFO     | sum of deviations: 68376861943.00002
[2025-10-13 01:45:59] 2025-10-12 23:44:53,493 | INFO     | mean x: 1760305314.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,493 | INFO     | mean y: 2461065.061135371
[2025-10-13 01:45:59] 2025-10-12 23:44:53,493 | INFO     | -- intersect: -32321202384.59463
[2025-10-13 01:45:59] 2025-10-12 23:44:53,493 | INFO     | intersect: -32321202384.59463
[2025-10-13 01:45:59] 2025-10-12 23:44:53,494 | INFO     | chi2: 4.457977562272271
[2025-10-13 01:45:59] 2025-10-12 23:44:53,494 | INFO     | current chi2=4.457977562272271 (change=14.069746922194092 %)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,494 | INFO     | right removable region: 228
[2025-10-13 01:45:59] 2025-10-12 23:44:53,494 | INFO     | sum of square deviations: 3723716330.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,496 | INFO     | sum of deviations: -19551471425.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,496 | INFO     | mean x: 1760305619.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,496 | INFO     | mean y: 2497905.253275109
[2025-10-13 01:45:59] 2025-10-12 23:44:53,496 | INFO     | -- intersect: 9245029279.58743
[2025-10-13 01:45:59] 2025-10-12 23:44:53,497 | INFO     | intersect: 9245029279.58743
[2025-10-13 01:45:59] 2025-10-12 23:44:53,497 | INFO     | chi2: 1.2530411819014873
[2025-10-13 01:45:59] 2025-10-12 23:44:53,497 | INFO     | current chi2=1.2530411819014873 (change=75.8468623106247 %)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,498 | INFO     | sum of square deviations: 3485088600.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,499 | INFO     | sum of deviations: -34910427612.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,499 | INFO     | mean x: 1760305771.5
[2025-10-13 01:45:59] 2025-10-12 23:44:53,500 | INFO     | mean y: 2507619.4553571427
[2025-10-13 01:45:59] 2025-10-12 23:44:53,500 | INFO     | -- intersect: 17635639589.45364
[2025-10-13 01:45:59] 2025-10-12 23:44:53,500 | INFO     | intersect: 17635639589.45364
[2025-10-13 01:45:59] 2025-10-12 23:44:53,500 | INFO     | chi2: 0.9448878156217013
[2025-10-13 01:45:59] 2025-10-12 23:44:53,500 | INFO     | current chi2=0.9448878156217013 (change=24.592437242338985 %)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,500 | INFO     | left removable region: 20
[2025-10-13 01:45:59] 2025-10-12 23:44:53,501 | INFO     | sum of square deviations: 2790348132.0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,502 | INFO     | sum of deviations: -12132891277.000002
[2025-10-13 01:45:59] 2025-10-12 23:44:53,502 | INFO     | mean x: 1760305893.5
[2025-10-13 01:45:59] 2025-10-12 23:44:53,503 | INFO     | mean y: 2512016.826923077
[2025-10-13 01:45:59] 2025-10-12 23:44:53,503 | INFO     | -- intersect: 7656610720.55736
[2025-10-13 01:45:59] 2025-10-12 23:44:53,503 | INFO     | intersect: 7656610720.55736
[2025-10-13 01:45:59] 2025-10-12 23:44:53,503 | INFO     | chi2: 0.11734189998340935
[2025-10-13 01:45:59] 2025-10-12 23:44:53,503 | INFO     | -- intersect: 7656610720.55736
[2025-10-13 01:45:59] 2025-10-12 23:44:53,503 | INFO     | current memory leak: -4.35 B/s (using 208 data points, chi2=0.12)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,504 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,504 | INFO     | ..............................
[2025-10-13 01:45:59] 2025-10-12 23:44:53,504 | INFO     | . Timing measurements:
[2025-10-13 01:45:59] 2025-10-12 23:44:53,504 | INFO     | . get job = 0 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,504 | INFO     | . initial setup = 6 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,505 | INFO     | . payload setup = 120 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,505 | INFO     | . stage-in = 0 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,505 | INFO     | . payload execution = 14380 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,505 | INFO     | . stage-out = 5 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,505 | INFO     | . log creation = 1 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,505 | INFO     | ..............................
[2025-10-13 01:45:59] 2025-10-12 23:44:53,669 | INFO     | 
[2025-10-13 01:45:59] 2025-10-12 23:44:53,669 | INFO     | job summary report
[2025-10-13 01:45:59] 2025-10-12 23:44:53,669 | INFO     | --------------------------------------------------
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | PanDA job id: 6839871043
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | task id: 46676269
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | errors: (none)
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | pilot state: finished 
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | transexitcode: 0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | exeerrorcode: 0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | exeerrordiag: 
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | exitcode: 0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | exitmsg: OK
[2025-10-13 01:45:59] 2025-10-12 23:44:53,670 | INFO     | cpuconsumptiontime: 54209 s
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | nevents: 400
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | neventsw: 0
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | pid: 28271
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | pgrp: 28271
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | corecount: 8
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | event service: False
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 33: 2348941, 44: 2348997, 55: 2349153, 66: 2349181, 76: 2349209, 87: 2349265, 93: 2349555, 98: 2349863, 1
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | --------------------------------------------------
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | 
[2025-10-13 01:45:59] 2025-10-12 23:44:53,671 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-13 01:45:59] 2025-10-12 23:44:54,038 | INFO     | time since job start (14791s) is within the limit (172800.0s)
[2025-10-13 01:45:59] 2025-10-12 23:44:54,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,217 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | job 6839871043 has completed (purged errors)
[2025-10-13 01:45:59] 2025-10-12 23:44:54,219 | INFO     | overall cleanup function is called
[2025-10-13 01:45:59] 2025-10-12 23:44:55,227 | INFO     | --- collectZombieJob: --- 10, [28271]
[2025-10-13 01:45:59] 2025-10-12 23:44:55,228 | INFO     | zombie collector waiting for pid 28271
[2025-10-13 01:45:59] 2025-10-12 23:44:55,228 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:45:59] 2025-10-12 23:44:55,228 | INFO     | collected zombie processes
[2025-10-13 01:45:59] 2025-10-12 23:44:55,228 | INFO     | will attempt to kill all subprocesses of pid=28271
[2025-10-13 01:45:59] 2025-10-12 23:44:55,339 | INFO     | process IDs to be killed: [28271] (in reverse order)
[2025-10-13 01:45:59] 2025-10-12 23:44:55,584 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:45:59] 2025-10-12 23:44:55,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:45:59] 2025-10-12 23:44:55,588 | INFO     | did not find any defunct processes belonging to 28271
[2025-10-13 01:45:59] 2025-10-12 23:44:55,590 | INFO     | did not find any defunct processes belonging to 28271
[2025-10-13 01:45:59] 2025-10-12 23:44:55,591 | INFO     | ready for new job
[2025-10-13 01:45:59] 2025-10-12 23:44:55,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:45:59] 2025-10-12 23:44:55,593 | INFO     | ***************************************
[2025-10-13 01:45:59] 2025-10-12 23:44:55,593 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:45:59] 2025-10-12 23:44:55,593 | INFO     | ***************************************
[2025-10-13 01:45:59] 2025-10-12 23:44:55,593 | INFO     | 
[2025-10-13 01:45:59] 2025-10-12 23:44:55,594 | INFO     | pilot is running in a VM
[2025-10-13 01:45:59] 2025-10-12 23:44:55,594 | INFO     | architecture information:
[2025-10-13 01:45:59] 2025-10-12 23:44:55,609 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:45:59] 2025-10-12 23:44:55,850 | INFO     | cat /etc/os-release:
[2025-10-13 01:45:59] NAME="CentOS Linux"
[2025-10-13 01:45:59] VERSION="7 (Core)"
[2025-10-13 01:45:59] ID="centos"
[2025-10-13 01:45:59] ID_LIKE="rhel fedora"
[2025-10-13 01:45:59] VERSION_ID="7"
[2025-10-13 01:45:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:45:59] ANSI_COLOR="0;31"
[2025-10-13 01:45:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:45:59] HOME_URL="https://www.centos.org/"
[2025-10-13 01:45:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:45:59] 
[2025-10-13 01:45:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:45:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:45:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:45:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:45:59] 
[2025-10-13 01:45:59] 2025-10-12 23:44:55,850 | INFO     | ***************************************
[2025-10-13 01:45:59] 2025-10-12 23:44:56,355 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-13 01:45:59] 2025-10-12 23:44:56,683 | INFO     | sufficient remaining disk space (495761489920 B)
[2025-10-13 01:45:59] 2025-10-12 23:44:56,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:45:59] 2025-10-12 23:44:56,684 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:45:59] 2025-10-12 23:44:56,684 | INFO     | update_server=False
[2025-10-13 01:45:59] 2025-10-12 23:44:56,684 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:45:59] 2025-10-12 23:44:56,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:45:59] 2025-10-12 23:44:56,697 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 01:45:59] 2025-10-12 23:44:56,698 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 01:45:59] 2025-10-12 23:44:56,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:45:59] 2025-10-12 23:44:56,698 | INFO     | will abort loop
[2025-10-13 01:45:59] 2025-10-12 23:44:56,910 | INFO     | all job control threads have been joined
[2025-10-13 01:45:59] 2025-10-12 23:44:56,969 | INFO     | all data control threads have been joined
[2025-10-13 01:45:59] 2025-10-12 23:44:57,690 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:57,704 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:57,917 | INFO     | [job] control thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:57,965 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:57,976 | INFO     | [data] control thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:57,981 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:58,023 | INFO     | all payload control threads have been joined
[2025-10-13 01:45:59] 2025-10-12 23:44:58,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:45:59] 2025-10-12 23:44:58,038 | INFO     | [job] validate thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:58,207 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:58,260 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:58,405 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:58,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:45:59] 2025-10-12 23:44:59,030 | INFO     | [payload] control thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:59,135 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:59,175 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:44:59,687 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:45:00,035 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:45:00,697 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:45:59] 2025-10-12 23:45:27,273 | INFO     | PID=21763 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:45:59] 2025-10-12 23:45:27,273 | INFO     | .. there are 9 such processes running
[2025-10-13 01:45:59] 2025-10-12 23:45:27,274 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:45:59] 2025-10-12 23:45:27,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:45:59] 2025-10-12 23:45:27,275 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:45:59] 2025-10-12 23:45:47,991 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:45:59] 2025-10-12 23:45:49,913 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314117654336)>', '<ExcThread(monitor, started 140313670698752)>']
[2025-10-13 01:45:59] 2025-10-12 23:45:50,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:45:59] 2025-10-12 23:45:50,409 | INFO     | [monitor] control thread has ended
[2025-10-13 01:45:59] 2025-10-12 23:45:54,938 | INFO     | all workflow threads have been joined
[2025-10-13 01:45:59] 2025-10-12 23:45:54,939 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:45:59] 2025-10-12 23:45:54,939 | INFO     | traces error code: 0
[2025-10-13 01:45:59] 2025-10-12 23:45:54,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:45:59] 2025-10-12 23:45:55,228 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:45:59] 2025-10-12 23:45:55,255 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:45:59] 2025-10-12 23:45:55,342 [wrapper] pilotpid: 21763
[2025-10-13 01:45:59] 2025-10-12 23:45:55,384 [wrapper] Pilot exit status: 0
[2025-10-13 01:45:59] 2025-10-12 23:45:55,776 [wrapper] pandaids: 6839871043
[2025-10-13 01:45:59] 2025-10-12 23:45:56,863 [wrapper] cleanup supervisor_pilot 22619 21764
[2025-10-13 01:45:59] 2025-10-12 23:45:56,941 [wrapper] Test setup, not cleaning
[2025-10-13 01:45:59] 2025-10-12 23:45:57,040 [wrapper] apfmon messages muted
[2025-10-13 01:45:59] 2025-10-12 23:45:57,128 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:45:59] 2025-10-12 23:45:57,230 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:45:59]  *** Error codes and diagnostics ***
[2025-10-13 01:45:59]     "exeErrorCode": 0,
[2025-10-13 01:45:59]     "exeErrorDiag": "",
[2025-10-13 01:45:59]     "pilotErrorCode": 0,
[2025-10-13 01:45:59]     "pilotErrorDiag": "",
[2025-10-13 01:45:59]  *** Listing of results directory ***
[2025-10-13 01:45:59] total 411500
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc    557409 Oct 12 13:23 pilot3.tar.gz
[2025-10-13 01:45:59] -rwx------. 1 boinc boinc     36292 Oct 12 13:40 runpilot2-wrapper.sh
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:40 queuedata.json
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc       100 Oct 12 21:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:45:59] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 21:34 run_atlas
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc       105 Oct 12 21:34 job.xml
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc      6389 Oct 12 21:34 init_data.xml
[2025-10-13 01:45:59] -rw-r--r--. 2 boinc boinc 219603799 Oct 12 21:34 EVNT.46676267._003703.pool.root.1
[2025-10-13 01:45:59] -rw-r--r--. 2 boinc boinc     15120 Oct 12 21:34 start_atlas.sh
[2025-10-13 01:45:59] drwxrwx--x. 2 boinc boinc        68 Oct 12 21:34 shared
[2025-10-13 01:45:59] -rw-r--r--. 2 boinc boinc    569681 Oct 12 21:34 input.tar.gz
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc         0 Oct 12 21:34 boinc_lockfile
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc      2550 Oct 12 21:35 pandaJob.out
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc    975536 Oct 12 21:38 agis_schedconf.cvmfs.json
[2025-10-13 01:45:59] drwx------. 5 boinc boinc      4096 Oct 12 21:38 pilot3
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc 193002514 Oct 13 01:41 HITS.46676269._077279.pool.root.1
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc       531 Oct 13 01:42 boinc_task_state.xml
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc      1013 Oct 13 01:43 memory_monitor_summary.json
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc   1560580 Oct 13 01:43 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc    463365 Oct 13 01:43 log.46676269._077279.job.log.tgz.1
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc      7776 Oct 13 01:44 heartbeat.json
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc        95 Oct 13 01:45 pilot_heartbeat.json
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc        28 Oct 13 01:45 wrapper_checkpoint.txt
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc      8192 Oct 13 01:45 boinc_mmap_file
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc      5070 Oct 13 01:45 pilotlog.txt
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc   1975037 Oct 13 01:45 log.46676269._077279.job.log.1
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc       357 Oct 13 01:45 output.list
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc       620 Oct 13 01:45 runtime_log
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc   2457600 Oct 13 01:45 result.tar.gz
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc      8703 Oct 13 01:45 runtime_log.err
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc       656 Oct 13 01:45 pxVNDmOc9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsejNDmTep9zn.diag
[2025-10-13 01:45:59] -rw-r--r--. 1 boinc boinc     20798 Oct 13 01:45 stderr.txt
[2025-10-13 01:45:59] HITS file was successfully produced:
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc 193002514 Oct 13 01:41 shared/HITS.pool.root.1
[2025-10-13 01:45:59]  *** Contents of shared directory: ***
[2025-10-13 01:45:59] total 405916
[2025-10-13 01:45:59] -rw-r--r--. 2 boinc boinc 219603799 Oct 12 21:34 ATLAS.root_0
[2025-10-13 01:45:59] -rw-r--r--. 2 boinc boinc     15120 Oct 12 21:34 start_atlas.sh
[2025-10-13 01:45:59] -rw-r--r--. 2 boinc boinc    569681 Oct 12 21:34 input.tar.gz
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc 193002514 Oct 13 01:41 HITS.pool.root.1
[2025-10-13 01:45:59] -rw-------. 1 boinc boinc   2457600 Oct 13 01:45 result.tar.gz
01:46:00 (17951): run_atlas exited; CPU time 54422.561587
01:46:00 (17951): called boinc_finish(0)

</stderr_txt>
]]>

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