Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:10:45 (3357738): wrapper (7.7.26015): starting
11:10:45 (3357738): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:10:45] Arguments: --nthreads 8
[2025-10-12 11:10:45] Threads: 8
[2025-10-12 11:10:45] Checking for CVMFS
[2025-10-12 11:10:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:10:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:10:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:10:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:10:47] 2.13.2.0 6268 5842 101044 151623 3 235 25369080 40960001 22292 16776704 0 13719438 99.929 2516822 34934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:10:47] CVMFS is ok
[2025-10-12 11:10:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:10:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:10:47] Further information can be found at the LHC@home message board.
[2025-10-12 11:10:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:10:47] Checking for apptainer binary...
[2025-10-12 11:10:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:10:47] Running /usr/bin/apptainer --version
[2025-10-12 11:10:47] apptainer version 1.4.3-1.el9
[2025-10-12 11:10:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:10:48] c-211-35-1.aglt2.org
[2025-10-12 11:10:48] apptainer works
[2025-10-12 11:10:48] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:10:48] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:10:48] Starting ATLAS job with PandaID=6839821372
[2025-10-12 11:10:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:59:51]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:59:51] 2025-10-12 18:59:13,596 | INFO     | time since job start (13635s) is within the limit (172800.0s)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,372 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 14:59:51] 2025-10-12 18:59:15,455 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2481.087666666667
[2025-10-12 14:59:51] 2025-10-12 18:59:15,590 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839821372/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,595 | INFO     | extracted standard info from prmon json
[2025-10-12 14:59:51] 2025-10-12 18:59:15,595 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:59:51] 2025-10-12 18:59:15,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:59:51] 2025-10-12 18:59:15,596 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:59:51] 2025-10-12 18:59:15,596 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:59:51] 2025-10-12 18:59:15,601 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:59:51] 2025-10-12 18:59:15,602 | INFO     | sum of square deviations: 3347090208.841614
[2025-10-12 14:59:51] 2025-10-12 18:59:15,604 | INFO     | sum of deviations: -44089589410.57922
[2025-10-12 14:59:51] 2025-10-12 18:59:15,604 | INFO     | mean x: 1760288766.5429864
[2025-10-12 14:59:51] 2025-10-12 18:59:15,604 | INFO     | mean y: 2560068.271493213
[2025-10-12 14:59:51] 2025-10-12 18:59:15,604 | INFO     | -- intersect: 23189986793.706303
[2025-10-12 14:59:51] 2025-10-12 18:59:15,605 | INFO     | intersect: 23189986793.706303
[2025-10-12 14:59:51] 2025-10-12 18:59:15,605 | INFO     | chi2: 3.2931840106571633
[2025-10-12 14:59:51] 2025-10-12 18:59:15,605 | INFO     | sum of square deviations: 3125057527.333324
[2025-10-12 14:59:51] 2025-10-12 18:59:15,607 | INFO     | sum of deviations: -28536028912.499985
[2025-10-12 14:59:51] 2025-10-12 18:59:15,607 | INFO     | mean x: 1760288614.0555556
[2025-10-12 14:59:51] 2025-10-12 18:59:15,608 | INFO     | mean y: 2570574.9583333335
[2025-10-12 14:59:51] 2025-10-12 18:59:15,608 | INFO     | -- intersect: 16076401647.085049
[2025-10-12 14:59:51] 2025-10-12 18:59:15,608 | INFO     | intersect: 16076401647.085049
[2025-10-12 14:59:51] 2025-10-12 18:59:15,608 | INFO     | chi2: 2.6227943849393704
[2025-10-12 14:59:51] 2025-10-12 18:59:15,608 | INFO     | current chi2=2.6227943849393704 (change=20.356883294353626 %)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,608 | INFO     | right removable region: 215
[2025-10-12 14:59:51] 2025-10-12 18:59:15,609 | INFO     | sum of square deviations: 3125011167.537043
[2025-10-12 14:59:51] 2025-10-12 18:59:15,610 | INFO     | sum of deviations: -94319066785.8148
[2025-10-12 14:59:51] 2025-10-12 18:59:15,611 | INFO     | mean x: 1760288919.0462964
[2025-10-12 14:59:51] 2025-10-12 18:59:15,611 | INFO     | mean y: 2594360.9814814813
[2025-10-12 14:59:51] 2025-10-12 18:59:15,611 | INFO     | -- intersect: 53131623096.168976
[2025-10-12 14:59:51] 2025-10-12 18:59:15,611 | INFO     | intersect: 53131623096.168976
[2025-10-12 14:59:51] 2025-10-12 18:59:15,611 | INFO     | chi2: 1.0340503430671153
[2025-10-12 14:59:51] 2025-10-12 18:59:15,611 | INFO     | current chi2=1.0340503430671153 (change=68.60028653968935 %)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,612 | INFO     | sum of square deviations: 2912952596.0094686
[2025-10-12 14:59:51] 2025-10-12 18:59:15,613 | INFO     | sum of deviations: -98758129781.75833
[2025-10-12 14:59:51] 2025-10-12 18:59:15,613 | INFO     | mean x: 1760289071.5592418
[2025-10-12 14:59:51] 2025-10-12 18:59:15,613 | INFO     | mean y: 2597518.260663507
[2025-10-12 14:59:51] 2025-10-12 18:59:15,613 | INFO     | -- intersect: 59681857943.09918
[2025-10-12 14:59:51] 2025-10-12 18:59:15,614 | INFO     | intersect: 59681857943.09918
[2025-10-12 14:59:51] 2025-10-12 18:59:15,614 | INFO     | chi2: 0.9573680516226675
[2025-10-12 14:59:51] 2025-10-12 18:59:15,614 | INFO     | current chi2=0.9573680516226675 (change=7.415721290416006 %)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,614 | INFO     | left removable region: 20
[2025-10-12 14:59:51] 2025-10-12 18:59:15,615 | INFO     | sum of square deviations: 2299282340.9948573
[2025-10-12 14:59:51] 2025-10-12 18:59:15,619 | INFO     | sum of deviations: -64918031666.55899
[2025-10-12 14:59:51] 2025-10-12 18:59:15,620 | INFO     | mean x: 1760289193.5948718
[2025-10-12 14:59:51] 2025-10-12 18:59:15,620 | INFO     | mean y: 2595646.841025641
[2025-10-12 14:59:51] 2025-10-12 18:59:15,620 | INFO     | -- intersect: 49702672742.4834
[2025-10-12 14:59:51] 2025-10-12 18:59:15,620 | INFO     | intersect: 49702672742.4834
[2025-10-12 14:59:51] 2025-10-12 18:59:15,620 | INFO     | chi2: 0.2331681921902253
[2025-10-12 14:59:51] 2025-10-12 18:59:15,621 | INFO     | -- intersect: 49702672742.4834
[2025-10-12 14:59:51] 2025-10-12 18:59:15,621 | INFO     | current memory leak: -28.23 B/s (using 195 data points, chi2=0.23)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,621 | INFO     | could have reported an average CPU frequency of 2523 MHz (11 samples)
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | ..............................
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . Timing measurements:
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . get job = 0 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . initial setup = 4 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . payload setup = 44 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . stage-in = 0 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . payload execution = 13483 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . stage-out = 4 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | . log creation = 0 s
[2025-10-12 14:59:51] 2025-10-12 18:59:15,622 | INFO     | ..............................
[2025-10-12 14:59:51] 2025-10-12 18:59:16,053 | INFO     | 
[2025-10-12 14:59:51] 2025-10-12 18:59:16,054 | INFO     | job summary report
[2025-10-12 14:59:51] 2025-10-12 18:59:16,054 | INFO     | --------------------------------------------------
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | PanDA job id: 6839821372
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | task id: 46676269
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | errors: (none)
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | pilot state: finished 
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | transexitcode: 0
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | exeerrorcode: 0
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | exeerrordiag: 
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | exitcode: 0
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | exitmsg: OK
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | cpuconsumptiontime: 51338 s
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | nevents: 400
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | neventsw: 0
[2025-10-12 14:59:51] 2025-10-12 18:59:16,055 | INFO     | pid: 3371950
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | pgrp: 3371950
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | corecount: 8
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | event service: False
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | sizes: {0: 2348680, 1: 2348879, 2: 2348879, 13: 2348907, 24: 2348963, 29: 2349253, 35: 2349409, 13531: 2379613, 13532: 2379612, 13538: 2388666, 13540: 2388722, 135
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | --------------------------------------------------
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | 
[2025-10-12 14:59:51] 2025-10-12 18:59:16,056 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 14:59:51] 2025-10-12 18:59:16,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | job 6839821372 has completed (purged errors)
[2025-10-12 14:59:51] 2025-10-12 18:59:16,121 | INFO     | overall cleanup function is called
[2025-10-12 14:59:51] 2025-10-12 18:59:17,181 | INFO     | --- collectZombieJob: --- 10, [3371950]
[2025-10-12 14:59:51] 2025-10-12 18:59:17,181 | INFO     | zombie collector waiting for pid 3371950
[2025-10-12 14:59:51] 2025-10-12 18:59:17,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:59:51] 2025-10-12 18:59:17,181 | INFO     | collected zombie processes
[2025-10-12 14:59:51] 2025-10-12 18:59:17,182 | INFO     | will attempt to kill all subprocesses of pid=3371950
[2025-10-12 14:59:51] 2025-10-12 18:59:17,253 | INFO     | PID=3363837 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:59:51] 2025-10-12 18:59:17,253 | INFO     | .. there are 17 such processes running
[2025-10-12 14:59:51] 2025-10-12 18:59:18,764 | INFO     | process IDs to be killed: [3371950] (in reverse order)
[2025-10-12 14:59:51] 2025-10-12 18:59:18,957 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:59:51] 2025-10-12 18:59:18,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:59:51] 2025-10-12 18:59:18,973 | INFO     | did not find any defunct processes belonging to 3371950
[2025-10-12 14:59:51] 2025-10-12 18:59:19,037 | INFO     | did not find any defunct processes belonging to 3371950
[2025-10-12 14:59:51] 2025-10-12 18:59:19,037 | INFO     | ready for new job
[2025-10-12 14:59:51] 2025-10-12 18:59:19,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:59:51] 2025-10-12 18:59:19,040 | INFO     | ***************************************
[2025-10-12 14:59:51] 2025-10-12 18:59:19,040 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:59:51] 2025-10-12 18:59:19,062 | INFO     | ***************************************
[2025-10-12 14:59:51] 2025-10-12 18:59:19,063 | INFO     | 
[2025-10-12 14:59:51] 2025-10-12 18:59:19,091 | INFO     | architecture information:
[2025-10-12 14:59:51] 2025-10-12 18:59:19,109 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:59:51] 2025-10-12 18:59:19,216 | INFO     | cat /etc/os-release:
[2025-10-12 14:59:51] NAME="CentOS Linux"
[2025-10-12 14:59:51] VERSION="7 (Core)"
[2025-10-12 14:59:51] ID="centos"
[2025-10-12 14:59:51] ID_LIKE="rhel fedora"
[2025-10-12 14:59:51] VERSION_ID="7"
[2025-10-12 14:59:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:59:51] ANSI_COLOR="0;31"
[2025-10-12 14:59:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:59:51] HOME_URL="https://www.centos.org/"
[2025-10-12 14:59:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:59:51] 
[2025-10-12 14:59:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:59:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:59:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:59:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:59:51] 
[2025-10-12 14:59:51] 2025-10-12 18:59:19,217 | INFO     | ***************************************
[2025-10-12 14:59:51] 2025-10-12 18:59:19,720 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 14:59:51] 2025-10-12 18:59:19,810 | INFO     | sufficient remaining disk space (127375769600 B)
[2025-10-12 14:59:51] 2025-10-12 18:59:19,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:59:51] 2025-10-12 18:59:19,811 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:59:51] 2025-10-12 18:59:19,811 | INFO     | update_server=False
[2025-10-12 14:59:51] 2025-10-12 18:59:19,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:59:51] 2025-10-12 18:59:19,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:59:51] 2025-10-12 18:59:19,812 | INFO     | aborting loop
[2025-10-12 14:59:51] 2025-10-12 18:59:19,917 | INFO     | all data control threads have been joined
[2025-10-12 14:59:51] 2025-10-12 18:59:19,929 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:59:51] 2025-10-12 18:59:20,421 | INFO     | all job control threads have been joined
[2025-10-12 14:59:51] 2025-10-12 18:59:20,604 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:59:51] 2025-10-12 18:59:20,820 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:20,825 | INFO     | all payload control threads have been joined
[2025-10-12 14:59:51] 2025-10-12 18:59:20,825 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:20,926 | INFO     | [data] control thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,000 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,004 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,064 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:59:51] 2025-10-12 18:59:21,109 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:59:51] 2025-10-12 18:59:21,438 | INFO     | [job] control thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,625 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,844 | INFO     | [payload] control thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,964 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:21,970 | INFO     | [job] validate thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:22,136 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:22,145 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:22,239 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:22,611 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:23,956 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:59:51] 2025-10-12 18:59:25,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638983259968)>', '<ExcThread(monitor, started 140638477600512)>']
[2025-10-12 14:59:51] 2025-10-12 18:59:30,189 | INFO     | all workflow threads have been joined
[2025-10-12 14:59:51] 2025-10-12 18:59:30,192 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:59:51] 2025-10-12 18:59:30,192 | INFO     | traces error code: 0
[2025-10-12 14:59:51] 2025-10-12 18:59:30,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:59:51] 2025-10-12 18:59:50,511 | INFO     | PID=3363837 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:59:51] 2025-10-12 18:59:50,512 | INFO     | .. there are 17 such processes running
[2025-10-12 14:59:51] 2025-10-12 18:59:50,513 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:59:51] 2025-10-12 18:59:50,513 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:59:51] 2025-10-12 18:59:50,513 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:59:51] 2025-10-12 18:59:50,513 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:59:51] 2025-10-12 18:59:50,513 | INFO     | [monitor] control thread has ended
[2025-10-12 14:59:51] 2025-10-12 18:59:50,742 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:59:51] 2025-10-12 18:59:50,746 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:59:51] 2025-10-12 18:59:50,753 [wrapper] pilotpid: 3363837
[2025-10-12 14:59:51] 2025-10-12 18:59:50,759 [wrapper] Pilot exit status: 0
[2025-10-12 14:59:51] 2025-10-12 18:59:50,830 [wrapper] pandaids: 6839821372
[2025-10-12 14:59:51] 2025-10-12 18:59:50,918 [wrapper] cleanup supervisor_pilot 3848563 3363838
[2025-10-12 14:59:51] 2025-10-12 18:59:50,925 [wrapper] Test setup, not cleaning
[2025-10-12 14:59:51] 2025-10-12 18:59:50,946 [wrapper] apfmon messages muted
[2025-10-12 14:59:51] 2025-10-12 18:59:50,960 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:59:51] 2025-10-12 18:59:50,976 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:59:51]  *** Error codes and diagnostics ***
[2025-10-12 14:59:51]     "exeErrorCode": 0,
[2025-10-12 14:59:51]     "exeErrorDiag": "",
[2025-10-12 14:59:51]     "pilotErrorCode": 0,
[2025-10-12 14:59:51]     "pilotErrorDiag": "",
[2025-10-12 14:59:51]  *** Listing of results directory ***
[2025-10-12 14:59:51] total 420372
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 05:04 pilot3.tar.gz
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 05:06 queuedata.json
[2025-10-12 14:59:51] -rwx------. 1 boincer umatlas     36292 Oct 12 05:08 runpilot2-wrapper.sh
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas       100 Oct 12 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:59:51] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 11:10 run_atlas
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas       105 Oct 12 11:10 job.xml
[2025-10-12 14:59:51] -rw-r--r--. 2 boincer umatlas 220579760 Oct 12 11:10 EVNT.46676267._003563.pool.root.1
[2025-10-12 14:59:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:10 start_atlas.sh
[2025-10-12 14:59:51] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 11:10 shared
[2025-10-12 14:59:51] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 11:10 input.tar.gz
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas         0 Oct 12 11:10 boinc_lockfile
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas      2547 Oct 12 11:10 pandaJob.out
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas    975528 Oct 12 11:11 agis_schedconf.cvmfs.json
[2025-10-12 14:59:51] drwx------. 5 boincer umatlas      4096 Oct 12 11:11 pilot3
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas      6858 Oct 12 14:54 init_data.xml
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas 201634687 Oct 12 14:57 HITS.46676269._075060.pool.root.1
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas       531 Oct 12 14:57 boinc_task_state.xml
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas      1046 Oct 12 14:58 memory_monitor_summary.json
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas   1560580 Oct 12 14:58 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas    432996 Oct 12 14:58 log.46676269._075060.job.log.tgz.1
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas      7848 Oct 12 14:59 heartbeat.json
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 14:59 boinc_mmap_file
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas        28 Oct 12 14:59 wrapper_checkpoint.txt
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas       823 Oct 12 14:59 pilotlog.txt
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas        95 Oct 12 14:59 pilot_heartbeat.json
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas   1737217 Oct 12 14:59 log.46676269._075060.job.log.1
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas       357 Oct 12 14:59 output.list
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas       620 Oct 12 14:59 runtime_log
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas   2191360 Oct 12 14:59 result.tar.gz
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas       658 Oct 12 14:59 yD7NDmNF7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfIjNDmxjvY3n.diag
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas      8714 Oct 12 14:59 runtime_log.err
[2025-10-12 14:59:51] -rw-r--r--. 1 boincer umatlas     21311 Oct 12 14:59 stderr.txt
[2025-10-12 14:59:51] HITS file was successfully produced:
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas 201634687 Oct 12 14:57 shared/HITS.pool.root.1
[2025-10-12 14:59:51]  *** Contents of shared directory: ***
[2025-10-12 14:59:51] total 415048
[2025-10-12 14:59:51] -rw-r--r--. 2 boincer umatlas 220579760 Oct 12 11:10 ATLAS.root_0
[2025-10-12 14:59:51] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:10 start_atlas.sh
[2025-10-12 14:59:51] -rw-r--r--. 2 boincer umatlas    569682 Oct 12 11:10 input.tar.gz
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas 201634687 Oct 12 14:57 HITS.pool.root.1
[2025-10-12 14:59:51] -rw-------. 1 boincer umatlas   2191360 Oct 12 14:59 result.tar.gz
14:59:52 (3357738): run_atlas exited; CPU time 51855.883802
14:59:52 (3357738): called boinc_finish(0)

</stderr_txt>
]]>

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