Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:24:25 (3754100): wrapper (7.7.26015): starting
02:24:25 (3754100): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 02:24:25] Arguments: --nthreads 4
[2025-10-13 02:24:25] Threads: 4
[2025-10-13 02:24:25] Checking for CVMFS
[2025-10-13 02:24:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:24:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:24:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:24:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:24:25] 2.9.2.0 1822434 4918 94632 151642 0 56 22525316 36864000 0 130560 0 5080243 99.993 172547 716 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 02:24:25] CVMFS is ok
[2025-10-13 02:24:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:24:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:24:25] Further information can be found at the LHC@home message board.
[2025-10-13 02:24:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:24:25] Checking for apptainer binary...
[2025-10-13 02:24:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:24:25] Running /usr/bin/apptainer --version
[2025-10-13 02:24:25] apptainer version 1.4.1-1.1
[2025-10-13 02:24:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:24:26] thA315b
[2025-10-13 02:24:26] apptainer works
[2025-10-13 02:24:26] Set ATHENA_PROC_NUMBER=4
[2025-10-13 02:24:26] Set ATHENA_CORE_NUMBER=4
[2025-10-13 02:24:26] Starting ATLAS job with PandaID=6840081631
[2025-10-13 02:24:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:27:42]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:27:42] 2025-10-13 01:27:06,860 | INFO     | will attempt to kill all subprocesses of pid=3764437
[2025-10-13 03:27:42] 2025-10-13 01:27:06,904 | INFO     | process IDs to be killed: [3764437] (in reverse order)
[2025-10-13 03:27:42] 2025-10-13 01:27:06,931 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:27:42] 2025-10-13 01:27:06,931 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:27:42] 2025-10-13 01:27:06,933 | INFO     | did not find any defunct processes belonging to 3764437
[2025-10-13 03:27:42] 2025-10-13 01:27:06,934 | INFO     | did not find any defunct processes belonging to 3764437
[2025-10-13 03:27:42] 2025-10-13 01:27:06,934 | INFO     | ready for new job
[2025-10-13 03:27:42] 2025-10-13 01:27:06,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:27:42] 2025-10-13 01:27:06,935 | INFO     | ***************************************
[2025-10-13 03:27:42] 2025-10-13 01:27:06,935 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:27:42] 2025-10-13 01:27:06,935 | INFO     | ***************************************
[2025-10-13 03:27:42] 2025-10-13 01:27:06,935 | INFO     | 
[2025-10-13 03:27:42] 2025-10-13 01:27:06,935 | INFO     | architecture information:
[2025-10-13 03:27:42] 2025-10-13 01:27:06,936 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:27:42] 2025-10-13 01:27:06,945 | INFO     | cat /etc/os-release:
[2025-10-13 03:27:42] NAME="CentOS Linux"
[2025-10-13 03:27:42] VERSION="7 (Core)"
[2025-10-13 03:27:42] ID="centos"
[2025-10-13 03:27:42] ID_LIKE="rhel fedora"
[2025-10-13 03:27:42] VERSION_ID="7"
[2025-10-13 03:27:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:27:42] ANSI_COLOR="0;31"
[2025-10-13 03:27:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:27:42] HOME_URL="https://www.centos.org/"
[2025-10-13 03:27:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:27:42] 
[2025-10-13 03:27:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:27:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:27:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:27:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:27:42] 
[2025-10-13 03:27:42] 2025-10-13 01:27:06,945 | INFO     | ***************************************
[2025-10-13 03:27:42] 2025-10-13 01:27:07,449 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:27:42] 2025-10-13 01:27:07,461 | INFO     | sufficient remaining disk space (337034346496 B)
[2025-10-13 03:27:42] 2025-10-13 01:27:07,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:27:42] 2025-10-13 01:27:07,461 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:27:42] 2025-10-13 01:27:07,461 | INFO     | update_server=False
[2025-10-13 03:27:42] 2025-10-13 01:27:07,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:27:42] 2025-10-13 01:27:07,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:27:42] 2025-10-13 01:27:07,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:27:42] 2025-10-13 01:27:07,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:27:42] 2025-10-13 01:27:07,462 | INFO     | aborting loop
[2025-10-13 03:27:42] 2025-10-13 01:27:07,522 | INFO     | all payload control threads have been joined
[2025-10-13 03:27:42] 2025-10-13 01:27:08,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:27:42] 2025-10-13 01:27:08,250 | INFO     | all data control threads have been joined
[2025-10-13 03:27:42] 2025-10-13 01:27:08,463 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:08,467 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:08,467 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:08,528 | INFO     | [payload] control thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:08,860 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:08,958 | INFO     | all job control threads have been joined
[2025-10-13 03:27:42] 2025-10-13 01:27:09,179 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,256 | INFO     | [data] control thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,626 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,805 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,850 | INFO     | [job] validate thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,935 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,962 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:09,964 | INFO     | [job] control thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:10,093 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:11,468 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:17,874 | INFO     | job.realtimelogging is not enabled
[2025-10-13 03:27:42] 2025-10-13 01:27:18,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:27:42] 2025-10-13 01:27:36,954 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:27:42] 2025-10-13 01:27:37,351 | INFO     | PID=3757894 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:27:42] 2025-10-13 01:27:37,351 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:27:42] 2025-10-13 01:27:37,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:27:42] 2025-10-13 01:27:37,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:27:42] 2025-10-13 01:27:37,707 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140288724731712)>', '<ExcThread(monitor, started 140288236439296)>']
[2025-10-13 03:27:42] 2025-10-13 01:27:38,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:27:42] 2025-10-13 01:27:38,357 | INFO     | [monitor] control thread has ended
[2025-10-13 03:27:42] 2025-10-13 01:27:42,733 | INFO     | all workflow threads have been joined
[2025-10-13 03:27:42] 2025-10-13 01:27:42,733 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:27:42] 2025-10-13 01:27:42,734 | INFO     | traces error code: 0
[2025-10-13 03:27:42] 2025-10-13 01:27:42,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:27:42] 2025-10-13 01:27:42,788 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:27:42] 2025-10-13 01:27:42,791 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:27:42] 2025-10-13 01:27:42,793 [wrapper] pilotpid: 3757894
[2025-10-13 03:27:42] 2025-10-13 01:27:42,796 [wrapper] Pilot exit status: 0
[2025-10-13 03:27:42] 2025-10-13 01:27:42,804 [wrapper] pandaids: 6840081631
[2025-10-13 03:27:42] 2025-10-13 01:27:42,822 [wrapper] cleanup supervisor_pilot 3774399 3757895
[2025-10-13 03:27:42] 2025-10-13 01:27:42,825 [wrapper] Test setup, not cleaning
[2025-10-13 03:27:42] 2025-10-13 01:27:42,828 [wrapper] apfmon messages muted
[2025-10-13 03:27:42] 2025-10-13 01:27:42,830 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:27:42] 2025-10-13 01:27:42,833 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:27:42]  *** Error codes and diagnostics ***
[2025-10-13 03:27:42]     "exeErrorCode": 0,
[2025-10-13 03:27:42]     "exeErrorDiag": "",
[2025-10-13 03:27:42]     "pilotErrorCode": 0,
[2025-10-13 03:27:42]     "pilotErrorDiag": "",
[2025-10-13 03:27:42]  *** Listing of results directory ***
[2025-10-13 03:27:42] total 409104
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:45 queuedata.json
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:45 pilot3.tar.gz
[2025-10-13 03:27:42] -rwx------ 1 boinc boinc     36292 Oct 12 15:46 runpilot2-wrapper.sh
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:27:42] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:24 run_atlas
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:24 job.xml
[2025-10-13 03:27:42] -rw-r--r-- 2 boinc boinc 219249616 Oct 13 02:24 EVNT.46676267._004018.pool.root.1
[2025-10-13 03:27:42] -rw-r--r-- 2 boinc boinc    569681 Oct 13 02:24 input.tar.gz
[2025-10-13 03:27:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:24 start_atlas.sh
[2025-10-13 03:27:42] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:24 shared
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:24 boinc_setup_complete
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc      6443 Oct 13 02:24 init_data.xml
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:24 boinc_lockfile
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:24 pandaJob.out
[2025-10-13 03:27:42] -rw------- 1 boinc boinc    975603 Oct 13 02:24 agis_schedconf.cvmfs.json
[2025-10-13 03:27:42] -rw------- 1 boinc boinc   1560580 Oct 13 02:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:27:42] drwx------ 5 boinc boinc      4096 Oct 13 02:24 pilot3
[2025-10-13 03:27:42] -rw------- 1 boinc boinc 194113623 Oct 13 03:26 HITS.46676269._079786.pool.root.1
[2025-10-13 03:27:42] -rw------- 1 boinc boinc        95 Oct 13 03:26 pilot_heartbeat.json
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:26 boinc_task_state.xml
[2025-10-13 03:27:42] -rw------- 1 boinc boinc      1031 Oct 13 03:26 memory_monitor_summary.json
[2025-10-13 03:27:42] -rw------- 1 boinc boinc    264657 Oct 13 03:26 log.46676269._079786.job.log.tgz.1
[2025-10-13 03:27:42] -rw------- 1 boinc boinc      7744 Oct 13 03:27 heartbeat.json
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:27 boinc_mmap_file
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:27 wrapper_checkpoint.txt
[2025-10-13 03:27:42] -rw------- 1 boinc boinc      4824 Oct 13 03:27 pilotlog.txt
[2025-10-13 03:27:42] -rw------- 1 boinc boinc    565397 Oct 13 03:27 log.46676269._079786.job.log.1
[2025-10-13 03:27:42] -rw------- 1 boinc boinc       357 Oct 13 03:27 output.list
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:27 runtime_log
[2025-10-13 03:27:42] -rw------- 1 boinc boinc    849920 Oct 13 03:27 result.tar.gz
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc      8782 Oct 13 03:27 runtime_log.err
[2025-10-13 03:27:42] -rw------- 1 boinc boinc       659 Oct 13 03:27 EqkKDmSaBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE5jNDmPgj1Xo.diag
[2025-10-13 03:27:42] -rw-r--r-- 1 boinc boinc     10290 Oct 13 03:27 stderr.txt
[2025-10-13 03:27:42] HITS file was successfully produced:
[2025-10-13 03:27:42] -rw------- 1 boinc boinc 194113623 Oct 13 03:26 shared/HITS.pool.root.1
[2025-10-13 03:27:42]  *** Contents of shared directory: ***
[2025-10-13 03:27:42] total 405096
[2025-10-13 03:27:42] -rw-r--r-- 2 boinc boinc 219249616 Oct 13 02:24 ATLAS.root_0
[2025-10-13 03:27:42] -rw-r--r-- 2 boinc boinc    569681 Oct 13 02:24 input.tar.gz
[2025-10-13 03:27:42] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:24 start_atlas.sh
[2025-10-13 03:27:42] -rw------- 1 boinc boinc 194113623 Oct 13 03:26 HITS.pool.root.1
[2025-10-13 03:27:42] -rw------- 1 boinc boinc    849920 Oct 13 03:27 result.tar.gz
03:27:44 (3754100): run_atlas exited; CPU time 13928.294193
03:27:44 (3754100): called boinc_finish(0)

</stderr_txt>
]]>

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