Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:02:42 (2779459): wrapper (7.7.26015): starting
11:02:42 (2779459): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:02:42] Arguments: --nthreads 8
[2025-10-12 11:02:42] Threads: 8
[2025-10-12 11:02:42] Checking for CVMFS
[2025-10-12 11:02:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:02:43] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:02:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:02:43] 2.13.2.0 3695926 129415 271888 151623 1 615 31101718 32935936 26883 16776704 0 215388841 99.570 250623388 29091 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 11:02:43] CVMFS is ok
[2025-10-12 11:02:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:02:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:02:43] Further information can be found at the LHC@home message board.
[2025-10-12 11:02:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:02:43] Checking for apptainer binary...
[2025-10-12 11:02:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:02:43] Running /usr/bin/apptainer --version
[2025-10-12 11:02:43] apptainer version 1.4.3-1.el9
[2025-10-12 11:02:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:02:43] c6-4-5-3.aglt2.org
[2025-10-12 11:02:43] apptainer works
[2025-10-12 11:02:43] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:02:43] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:02:43] Starting ATLAS job with PandaID=6829510521
[2025-10-12 11:02:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:20:09 (2779459): BOINC client no longer exists - exiting
11:20:09 (2779459): timer handler: client dead, exiting
11:31:11 (2880498): wrapper (7.7.26015): starting
11:31:11 (2880498): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:31:11] Arguments: --nthreads 8
[2025-10-12 11:31:11] Threads: 8
[2025-10-12 11:31:11] This job has been restarted, cleaning up previous attempt
[2025-10-12 11:31:11] Checking for CVMFS
[2025-10-12 11:31:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:31:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:31:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:31:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:31:12] 2.13.2.0 3695926 129444 250680 151625 1 72 31123948 32935936 26327 16776704 0 215528458 99.570 250625747 29091 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 11:31:12] CVMFS is ok
[2025-10-12 11:31:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:31:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:31:12] Further information can be found at the LHC@home message board.
[2025-10-12 11:31:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:31:12] Checking for apptainer binary...
[2025-10-12 11:31:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:31:12] Running /usr/bin/apptainer --version
[2025-10-12 11:31:13] apptainer version 1.4.3-1.el9
[2025-10-12 11:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:31:13] c6-4-5-3.aglt2.org
[2025-10-12 11:31:13] apptainer works
[2025-10-12 11:31:13] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:31:13] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:31:13] Starting ATLAS job with PandaID=6829510521
[2025-10-12 11:31:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:53:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:53:15] 2025-10-12 20:52:30,701 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 16:53:15] 2025-10-12 20:52:30,708 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2935.046625
[2025-10-12 16:53:15] 2025-10-12 20:52:30,711 | INFO     | time since job start (19254s) is within the limit (172800.0s)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,738 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6829510521/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,738 | INFO     | extracted standard info from prmon json
[2025-10-12 16:53:15] 2025-10-12 20:52:30,738 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:53:15] 2025-10-12 20:52:30,738 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:53:15] 2025-10-12 20:52:30,739 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:53:15] 2025-10-12 20:52:30,739 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:53:15] 2025-10-12 20:52:30,743 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:53:15] 2025-10-12 20:52:30,744 | INFO     | sum of square deviations: 9691449698.92058
[2025-10-12 16:53:15] 2025-10-12 20:52:30,746 | INFO     | sum of deviations: 14594190066.063505
[2025-10-12 16:53:15] 2025-10-12 20:52:30,746 | INFO     | mean x: 1760292739.1269841
[2025-10-12 16:53:15] 2025-10-12 20:52:30,746 | INFO     | mean y: 2129612.2984126983
[2025-10-12 16:53:15] 2025-10-12 20:52:30,747 | INFO     | -- intersect: -2648665429.189763
[2025-10-12 16:53:15] 2025-10-12 20:52:30,747 | INFO     | intersect: -2648665429.189763
[2025-10-12 16:53:15] 2025-10-12 20:52:30,747 | INFO     | chi2: 2.733088774961975
[2025-10-12 16:53:15] 2025-10-12 20:52:30,747 | INFO     | sum of square deviations: 9237230126.338692
[2025-10-12 16:53:15] 2025-10-12 20:52:30,749 | INFO     | sum of deviations: 28780710189.790287
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | mean x: 1760292586.6290324
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | mean y: 2134304.4677419355
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | -- intersect: -5482461195.708163
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | intersect: -5482461195.708163
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | chi2: 2.0754516023845078
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | current chi2=2.0754516023845078 (change=24.06204945123368 %)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,750 | INFO     | right removable region: 309
[2025-10-12 16:53:15] 2025-10-12 20:52:30,751 | INFO     | sum of square deviations: 9237205726.338694
[2025-10-12 16:53:15] 2025-10-12 20:52:30,753 | INFO     | sum of deviations: -39508993384.903206
[2025-10-12 16:53:15] 2025-10-12 20:52:30,753 | INFO     | mean x: 1760292891.6290324
[2025-10-12 16:53:15] 2025-10-12 20:52:30,753 | INFO     | mean y: 2147704.3225806453
[2025-10-12 16:53:15] 2025-10-12 20:52:30,753 | INFO     | -- intersect: 7531199483.753906
[2025-10-12 16:53:15] 2025-10-12 20:52:30,753 | INFO     | intersect: 7531199483.753906
[2025-10-12 16:53:15] 2025-10-12 20:52:30,754 | INFO     | chi2: 0.9430147433050629
[2025-10-12 16:53:15] 2025-10-12 20:52:30,754 | INFO     | current chi2=0.9430147433050629 (change=65.49637348248292 %)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,754 | INFO     | sum of square deviations: 8797380628.754097
[2025-10-12 16:53:15] 2025-10-12 20:52:30,756 | INFO     | sum of deviations: -47886604477.9508
[2025-10-12 16:53:15] 2025-10-12 20:52:30,756 | INFO     | mean x: 1760293044.1311476
[2025-10-12 16:53:15] 2025-10-12 20:52:30,756 | INFO     | mean y: 2150595.3737704917
[2025-10-12 16:53:15] 2025-10-12 20:52:30,756 | INFO     | -- intersect: 9583918206.301184
[2025-10-12 16:53:15] 2025-10-12 20:52:30,756 | INFO     | intersect: 9583918206.301184
[2025-10-12 16:53:15] 2025-10-12 20:52:30,757 | INFO     | chi2: 0.8823825698109549
[2025-10-12 16:53:15] 2025-10-12 20:52:30,757 | INFO     | current chi2=0.8823825698109549 (change=6.429610345391349 %)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,757 | INFO     | left removable region: 20
[2025-10-12 16:53:15] 2025-10-12 20:52:30,757 | INFO     | sum of square deviations: 7484192025.0034895
[2025-10-12 16:53:15] 2025-10-12 20:52:30,759 | INFO     | sum of deviations: -31738743818.82353
[2025-10-12 16:53:15] 2025-10-12 20:52:30,759 | INFO     | mean x: 1760293166.1314878
[2025-10-12 16:53:15] 2025-10-12 20:52:30,759 | INFO     | mean y: 2155803.705882353
[2025-10-12 16:53:15] 2025-10-12 20:52:30,759 | INFO     | -- intersect: 7467155854.375614
[2025-10-12 16:53:15] 2025-10-12 20:52:30,759 | INFO     | intersect: 7467155854.375614
[2025-10-12 16:53:15] 2025-10-12 20:52:30,760 | INFO     | chi2: 0.20099790569458312
[2025-10-12 16:53:15] 2025-10-12 20:52:30,760 | INFO     | -- intersect: 7467155854.375614
[2025-10-12 16:53:15] 2025-10-12 20:52:30,760 | INFO     | current memory leak: -4.24 B/s (using 289 data points, chi2=0.20)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | could have reported an average CPU frequency of 2864 MHz (14 samples)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | ..............................
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . Timing measurements:
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . get job = 0 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . initial setup = 2 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . payload setup = 18 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . stage-in = 0 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . payload execution = 19194 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . stage-out = 2 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | . log creation = 0 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,761 | INFO     | ..............................
[2025-10-12 16:53:15] 2025-10-12 20:52:30,845 | INFO     | 
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | job summary report
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | --------------------------------------------------
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | PanDA job id: 6829510521
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | task id: 46376905
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | errors: (none)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | pilot state: finished 
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | transexitcode: 0
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | exeerrorcode: 0
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | exeerrordiag: 
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | exitcode: 0
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | exitmsg: OK
[2025-10-12 16:53:15] 2025-10-12 20:52:30,846 | INFO     | cpuconsumptiontime: 37529 s
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | nevents: 400
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | neventsw: 0
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | pid: 2914490
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | pgrp: 2914490
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | corecount: 8
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | event service: False
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | sizes: {0: 2348645, 1: 2348844, 2: 2348844, 11: 2349134, 12: 2349162, 19217: 2382287, 19220: 2391285, 19222: 2391341, 19229: 2391535}
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | --------------------------------------------------
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | 
[2025-10-12 16:53:15] 2025-10-12 20:52:30,847 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 16:53:15] 2025-10-12 20:52:30,869 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:53:15] 2025-10-12 20:52:30,871 | INFO     | job 6829510521 has completed (purged errors)
[2025-10-12 16:53:15] 2025-10-12 20:52:30,871 | INFO     | overall cleanup function is called
[2025-10-12 16:53:15] 2025-10-12 20:52:31,887 | INFO     | --- collectZombieJob: --- 10, [2914490]
[2025-10-12 16:53:15] 2025-10-12 20:52:31,887 | INFO     | zombie collector waiting for pid 2914490
[2025-10-12 16:53:15] 2025-10-12 20:52:31,887 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:53:15] 2025-10-12 20:52:31,887 | INFO     | collected zombie processes
[2025-10-12 16:53:15] 2025-10-12 20:52:31,887 | INFO     | will attempt to kill all subprocesses of pid=2914490
[2025-10-12 16:53:15] 2025-10-12 20:52:32,277 | INFO     | process IDs to be killed: [2914490] (in reverse order)
[2025-10-12 16:53:15] 2025-10-12 20:52:32,389 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:53:15] 2025-10-12 20:52:32,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:53:15] 2025-10-12 20:52:32,406 | INFO     | did not find any defunct processes belonging to 2914490
[2025-10-12 16:53:15] 2025-10-12 20:52:32,422 | INFO     | did not find any defunct processes belonging to 2914490
[2025-10-12 16:53:15] 2025-10-12 20:52:32,423 | INFO     | ready for new job
[2025-10-12 16:53:15] 2025-10-12 20:52:32,423 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:53:15] 2025-10-12 20:52:32,425 | INFO     | ***************************************
[2025-10-12 16:53:15] 2025-10-12 20:52:32,425 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 16:53:15] 2025-10-12 20:52:32,425 | INFO     | ***************************************
[2025-10-12 16:53:15] 2025-10-12 20:52:32,425 | INFO     | 
[2025-10-12 16:53:15] 2025-10-12 20:52:32,441 | INFO     | architecture information:
[2025-10-12 16:53:15] 2025-10-12 20:52:32,442 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:53:15] 2025-10-12 20:52:32,461 | INFO     | cat /etc/os-release:
[2025-10-12 16:53:15] NAME="CentOS Linux"
[2025-10-12 16:53:15] VERSION="7 (Core)"
[2025-10-12 16:53:15] ID="centos"
[2025-10-12 16:53:15] ID_LIKE="rhel fedora"
[2025-10-12 16:53:15] VERSION_ID="7"
[2025-10-12 16:53:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:53:15] ANSI_COLOR="0;31"
[2025-10-12 16:53:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:53:15] HOME_URL="https://www.centos.org/"
[2025-10-12 16:53:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:53:15] 
[2025-10-12 16:53:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:53:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:53:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:53:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:53:15] 
[2025-10-12 16:53:15] 2025-10-12 20:52:32,462 | INFO     | ***************************************
[2025-10-12 16:53:15] 2025-10-12 20:52:32,965 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 16:53:15] 2025-10-12 20:52:32,990 | INFO     | sufficient remaining disk space (75089575936 B)
[2025-10-12 16:53:15] 2025-10-12 20:52:32,990 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:53:15] 2025-10-12 20:52:32,991 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:53:15] 2025-10-12 20:52:32,991 | INFO     | update_server=False
[2025-10-12 16:53:15] 2025-10-12 20:52:32,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:53:15] 2025-10-12 20:52:32,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:53:15] 2025-10-12 20:52:33,456 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:53:15] 2025-10-12 20:52:33,456 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:53:15] 2025-10-12 20:52:33,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:53:15] 2025-10-12 20:52:33,456 | INFO     | will abort loop
[2025-10-12 16:53:15] 2025-10-12 20:52:33,780 | INFO     | all data control threads have been joined
[2025-10-12 16:53:15] 2025-10-12 20:52:33,997 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,143 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,150 | INFO     | all job control threads have been joined
[2025-10-12 16:53:15] 2025-10-12 20:52:34,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:53:15] 2025-10-12 20:52:34,297 | INFO     | all payload control threads have been joined
[2025-10-12 16:53:15] 2025-10-12 20:52:34,389 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,393 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,462 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,499 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,792 | INFO     | [data] control thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,827 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,990 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:34,997 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:35,155 | INFO     | [job] control thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:35,217 | INFO     | [job] validate thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:35,303 | INFO     | [payload] control thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:35,448 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:35,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:53:15] 2025-10-12 20:52:36,865 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:52:38,229 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:53:15] 2025-10-12 20:53:04,230 | INFO     | PID=2891587 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:53:15] 2025-10-12 20:53:04,231 | INFO     | .. there are 34 such processes running
[2025-10-12 16:53:15] 2025-10-12 20:53:04,231 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:53:15] 2025-10-12 20:53:04,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:53:15] 2025-10-12 20:53:04,231 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:53:15] 2025-10-12 20:53:09,154 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:53:15] 2025-10-12 20:53:09,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140694944405312)>', '<ExcThread(monitor, started 140694438000384)>']
[2025-10-12 16:53:15] 2025-10-12 20:53:10,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:53:15] 2025-10-12 20:53:10,268 | INFO     | [monitor] control thread has ended
[2025-10-12 16:53:15] 2025-10-12 20:53:14,567 | INFO     | all workflow threads have been joined
[2025-10-12 16:53:15] 2025-10-12 20:53:14,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:53:15] 2025-10-12 20:53:14,567 | INFO     | traces error code: 0
[2025-10-12 16:53:15] 2025-10-12 20:53:14,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:53:15] 2025-10-12 20:53:14,801 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:53:15] 2025-10-12 20:53:14,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:53:15] 2025-10-12 20:53:14,809 [wrapper] pilotpid: 2891587
[2025-10-12 16:53:15] 2025-10-12 20:53:14,811 [wrapper] Pilot exit status: 0
[2025-10-12 16:53:15] 2025-10-12 20:53:14,846 [wrapper] pandaids: 6829510521 6829510521
[2025-10-12 16:53:15] 2025-10-12 20:53:14,925 [wrapper] cleanup supervisor_pilot 4082948 2891588
[2025-10-12 16:53:15] 2025-10-12 20:53:14,927 [wrapper] Test setup, not cleaning
[2025-10-12 16:53:15] 2025-10-12 20:53:14,930 [wrapper] apfmon messages muted
[2025-10-12 16:53:15] 2025-10-12 20:53:14,932 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:53:15] 2025-10-12 20:53:14,934 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:53:15]  *** Error codes and diagnostics ***
[2025-10-12 16:53:15]     "exeErrorCode": 0,
[2025-10-12 16:53:15]     "exeErrorDiag": "",
[2025-10-12 16:53:15]     "pilotErrorCode": 0,
[2025-10-12 16:53:15]     "pilotErrorDiag": "",
[2025-10-12 16:53:15]  *** Listing of results directory ***
[2025-10-12 16:53:15] total 604680
[2025-10-12 16:53:15] drwx------. 4 boincer umatlas      4096 Jul 31 09:00 pilot3
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas    552446 Oct  4 04:30 pilot3.tar.gz
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas      5112 Oct  4 05:00 queuedata.json
[2025-10-12 16:53:15] -rwx------. 1 boincer umatlas     36292 Oct  4 05:00 runpilot2-wrapper.sh
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas       100 Oct 12 11:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:53:15] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 11:02 run_atlas
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas       105 Oct 12 11:02 job.xml
[2025-10-12 16:53:15] -rw-r--r--. 3 boincer umatlas 214437207 Oct 12 11:02 EVNT.46376901._002000.pool.root.1
[2025-10-12 16:53:15] -rw-r--r--. 3 boincer umatlas 214437207 Oct 12 11:02 ATLAS.root_0
[2025-10-12 16:53:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:02 start_atlas.sh
[2025-10-12 16:53:15] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 11:02 shared
[2025-10-12 16:53:15] -rw-r--r--. 2 boincer umatlas    565602 Oct 12 11:02 input.tar.gz
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas         0 Oct 12 11:02 boinc_lockfile
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas      2519 Oct 12 11:31 pandaJob.out
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas    975528 Oct 12 11:31 agis_schedconf.cvmfs.json
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas      6857 Oct 12 16:47 init_data.xml
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas 180454679 Oct 12 16:51 HITS.46376905._055991.pool.root.1
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas       531 Oct 12 16:51 boinc_task_state.xml
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas      1052 Oct 12 16:52 memory_monitor_summary.json
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas   1560580 Oct 12 16:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas    527930 Oct 12 16:52 log.46376905._055991.job.log.tgz.1
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas      7845 Oct 12 16:52 heartbeat.json
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas        96 Oct 12 16:52 pilot_heartbeat.json
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 16:53 boinc_mmap_file
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas        28 Oct 12 16:53 wrapper_checkpoint.txt
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas      5010 Oct 12 16:53 pilotlog.txt
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas   2457418 Oct 12 16:53 log.46376905._055991.job.log.1
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas       357 Oct 12 16:53 output.list
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas       620 Oct 12 16:53 runtime_log
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas   3000320 Oct 12 16:53 result.tar.gz
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas       785 Oct 12 16:53 GkdNDmoIDP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpADMDmgFaOOn.diag
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas      8789 Oct 12 16:53 runtime_log.err
[2025-10-12 16:53:15] -rw-r--r--. 1 boincer umatlas     23473 Oct 12 16:53 stderr.txt
[2025-10-12 16:53:15] HITS file was successfully produced:
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas 180454679 Oct 12 16:51 shared/HITS.pool.root.1
[2025-10-12 16:53:15]  *** Contents of shared directory: ***
[2025-10-12 16:53:15] total 389152
[2025-10-12 16:53:15] -rw-r--r--. 3 boincer umatlas 214437207 Oct 12 11:02 ATLAS.root_0
[2025-10-12 16:53:15] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:02 start_atlas.sh
[2025-10-12 16:53:15] -rw-r--r--. 2 boincer umatlas    565602 Oct 12 11:02 input.tar.gz
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas 180454679 Oct 12 16:51 HITS.pool.root.1
[2025-10-12 16:53:15] -rw-------. 1 boincer umatlas   3000320 Oct 12 16:53 result.tar.gz
16:53:17 (2880498): run_atlas exited; CPU time 38188.854321
16:53:17 (2880498): called boinc_finish(0)

</stderr_txt>
]]>

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