Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:08:11 (1551294): wrapper (7.7.26015): starting
16:08:11 (1551294): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 16:08:11] Arguments: --nthreads 12
[2025-10-12 16:08:11] Threads: 12
[2025-10-12 16:08:11] Checking for CVMFS
[2025-10-12 16:08:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:08:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:08:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:08:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:08:12] 2.11.0.0 3299214 3282 88612 151625 3 188 5399327 6144001 14725 130560 0 64387399 100.000 118114 185 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 16:08:12] CVMFS is ok
[2025-10-12 16:08:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:08:12] Checking for apptainer binary...
[2025-10-12 16:08:12] apptainer is not installed, using version from CVMFS
[2025-10-12 16:08:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:08:12] radiat0r
[2025-10-12 16:08:12] apptainer works
[2025-10-12 16:08:12] Set ATHENA_PROC_NUMBER=12
[2025-10-12 16:08:12] Set ATHENA_CORE_NUMBER=12
[2025-10-12 16:08:12] Starting ATLAS job with PandaID=6839867686
[2025-10-12 16:08:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:00:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:00:56]  surl=/var/lib/boinc/slots/10/PanDA_Pilot-6839867686/log.46676269._076565.job.log.tgz.1
[2025-10-12 17:00:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/7a/log.46676269._076565.job.log.tgz.1
[2025-10-12 17:00:56]  workdir=None
[2025-10-12 17:00:56] ]
[2025-10-12 17:00:56] 2025-10-12 17:00:12,871 | INFO     | transferring file log.46676269._076565.job.log.tgz.1 from /var/lib/boinc/slots/10/PanDA_Pilot-6839867686/log.46676269._076565.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 17:00:56] 2025-10-12 17:00:12,872 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/10/PanDA_Pilot-6839867686/log.46676269._076565.job.log.tgz.1 /var/lib/boinc/slots/10/log.46676269._076565.j
[2025-10-12 17:00:56] 2025-10-12 17:00:12,895 | INFO     | adding to output.list: log.46676269._076565.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/7a/log.46676269._076565.job.log.tg
[2025-10-12 17:00:56] 2025-10-12 17:00:12,896 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:00:56] 2025-10-12 17:00:12,896 | INFO     | summary of transferred files:
[2025-10-12 17:00:56] 2025-10-12 17:00:12,896 | INFO     |  -- lfn=log.46676269._076565.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:00:56] 2025-10-12 17:00:12,897 | INFO     | stage-out finished correctly
[2025-10-12 17:00:56] 2025-10-12 17:00:12,941 | INFO     | time since job start (3103s) is within the limit (172800.0s)
[2025-10-12 17:00:56] 2025-10-12 17:00:14,219 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:00:56] 2025-10-12 17:00:14,962 | INFO     | time since job start (3105s) is within the limit (172800.0s)
[2025-10-12 17:00:56] 2025-10-12 17:00:15,980 | INFO     | job 6839867686 has state=finished
[2025-10-12 17:00:56] 2025-10-12 17:00:15,981 | INFO     | preparing for final server update for job 6839867686 in state='finished'
[2025-10-12 17:00:56] 2025-10-12 17:00:15,982 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:00:56] 2025-10-12 17:00:15,982 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:00:56] 2025-10-12 17:00:15,982 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:00:56] 2025-10-12 17:00:15,983 | INFO     | job 6839867686 has finished - writing final server update
[2025-10-12 17:00:56] 2025-10-12 17:00:15,983 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:00:56] 2025-10-12 17:00:15,984 | INFO     | executing command: lscpu
[2025-10-12 17:00:56] 2025-10-12 17:00:16,179 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:00:56] 2025-10-12 17:00:17,080 | INFO     | PID=1555984 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 17:00:56] 2025-10-12 17:00:17,080 | INFO     | .. there are 17 such processes running
[2025-10-12 17:00:56] 2025-10-12 17:00:17,731 | WARNING  | process 1564122 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:00:56] 2025-10-12 17:00:17,732 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6839867686/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:00:56] 2025-10-12 17:00:18,081 | INFO     | time since job start (3109s) is within the limit (172800.0s)
[2025-10-12 17:00:56] 2025-10-12 17:00:18,521 | INFO     | number of running child processes to parent process 1564122: 1
[2025-10-12 17:00:56] 2025-10-12 17:00:18,522 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:00:56] 2025-10-12 17:00:20,087 | INFO     | time since job start (3111s) is within the limit (172800.0s)
[2025-10-12 17:00:56] 2025-10-12 17:00:21,022 | INFO     | monitor loop #217: job 0:6839867686 is in state 'finished'
[2025-10-12 17:00:56] 2025-10-12 17:00:21,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:00:56] 2025-10-12 17:00:22,092 | INFO     | time since job start (3113s) is within the limit (172800.0s)
[2025-10-12 17:00:56] 2025-10-12 17:00:22,846 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:00:56] 2025-10-12 17:00:22,910 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2325.037171875
[2025-10-12 17:00:56] 2025-10-12 17:00:22,984 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6839867686/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:00:56] 2025-10-12 17:00:22,985 | INFO     | extracted standard info from prmon json
[2025-10-12 17:00:56] 2025-10-12 17:00:22,985 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:00:56] 2025-10-12 17:00:22,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:00:56] 2025-10-12 17:00:22,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:00:56] 2025-10-12 17:00:22,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:00:56] 2025-10-12 17:00:22,987 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | sum of square deviations: 26400495.0
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | sum of deviations: 176776047.99999997
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | mean x: 1760286960.5
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | mean y: 2661642.8181818184
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | -- intersect: -11784108727.325335
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | intersect: -11784108727.325335
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | chi2: 0.0016116911209223235
[2025-10-12 17:00:56] 2025-10-12 17:00:22,988 | INFO     | -- intersect: -11784108727.325335
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | current memory leak: 6.70 B/s (using 44 data points, chi2=0.00)
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | could have reported an average CPU frequency of 2380 MHz (5 samples)
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | ..............................
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | . Timing measurements:
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | . get job = 0 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | . initial setup = 4 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | . payload setup = 8 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | . stage-in = 0 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,989 | INFO     | . payload execution = 3071 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,990 | INFO     | . stage-out = 0 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,990 | INFO     | . log creation = 0 s
[2025-10-12 17:00:56] 2025-10-12 17:00:22,990 | INFO     | ..............................
[2025-10-12 17:00:56] 2025-10-12 17:00:23,082 | INFO     | 
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | job summary report
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | --------------------------------------------------
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | PanDA job id: 6839867686
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | task id: 46676269
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | errors: (none)
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | pilot state: finished 
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | transexitcode: 0
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | exeerrorcode: 0
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | exeerrordiag: 
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | exitcode: 0
[2025-10-12 17:00:56] 2025-10-12 17:00:23,083 | INFO     | exitmsg: OK
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | cpuconsumptiontime: 33337 s
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | nevents: 400
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | neventsw: 0
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | pid: 1564122
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | pgrp: 1564122
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | corecount: 12
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | event service: False
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | sizes: {0: 2348681, 1: 2348880, 8: 2349142, 11: 2349170, 3083: 2374710, 3084: 2383710, 3086: 2383894, 3094: 2384120}
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | --------------------------------------------------
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | 
[2025-10-12 17:00:56] 2025-10-12 17:00:23,084 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-12 17:00:56] 2025-10-12 17:00:23,115 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,116 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:00:56] 2025-10-12 17:00:23,118 | INFO     | job 6839867686 has completed (purged errors)
[2025-10-12 17:00:56] 2025-10-12 17:00:23,118 | INFO     | overall cleanup function is called
[2025-10-12 17:00:56] 2025-10-12 17:00:24,128 | INFO     | --- collectZombieJob: --- 10, [1564122]
[2025-10-12 17:00:56] 2025-10-12 17:00:24,128 | INFO     | zombie collector waiting for pid 1564122
[2025-10-12 17:00:56] 2025-10-12 17:00:24,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:00:56] 2025-10-12 17:00:24,129 | INFO     | collected zombie processes
[2025-10-12 17:00:56] 2025-10-12 17:00:24,129 | INFO     | will attempt to kill all subprocesses of pid=1564122
[2025-10-12 17:00:56] 2025-10-12 17:00:24,917 | INFO     | process IDs to be killed: [1564122] (in reverse order)
[2025-10-12 17:00:56] 2025-10-12 17:00:25,180 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:00:56] 2025-10-12 17:00:25,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:00:56] 2025-10-12 17:00:25,208 | INFO     | did not find any defunct processes belonging to 1564122
[2025-10-12 17:00:56] 2025-10-12 17:00:25,232 | INFO     | did not find any defunct processes belonging to 1564122
[2025-10-12 17:00:56] 2025-10-12 17:00:25,233 | INFO     | ready for new job
[2025-10-12 17:00:56] 2025-10-12 17:00:25,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:00:56] 2025-10-12 17:00:25,235 | INFO     | ***************************************
[2025-10-12 17:00:56] 2025-10-12 17:00:25,235 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:00:56] 2025-10-12 17:00:25,235 | INFO     | ***************************************
[2025-10-12 17:00:56] 2025-10-12 17:00:25,235 | INFO     | 
[2025-10-12 17:00:56] 2025-10-12 17:00:25,272 | INFO     | architecture information:
[2025-10-12 17:00:56] 2025-10-12 17:00:25,273 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:00:56] 2025-10-12 17:00:25,299 | INFO     | cat /etc/os-release:
[2025-10-12 17:00:56] NAME="CentOS Linux"
[2025-10-12 17:00:56] VERSION="7 (Core)"
[2025-10-12 17:00:56] ID="centos"
[2025-10-12 17:00:56] ID_LIKE="rhel fedora"
[2025-10-12 17:00:56] VERSION_ID="7"
[2025-10-12 17:00:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:00:56] ANSI_COLOR="0;31"
[2025-10-12 17:00:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:00:56] HOME_URL="https://www.centos.org/"
[2025-10-12 17:00:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:00:56] 
[2025-10-12 17:00:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:00:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:00:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:00:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:00:56] 
[2025-10-12 17:00:56] 2025-10-12 17:00:25,299 | INFO     | ***************************************
[2025-10-12 17:00:56] 2025-10-12 17:00:25,803 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-12 17:00:56] 2025-10-12 17:00:25,828 | INFO     | sufficient remaining disk space (1725130866688 B)
[2025-10-12 17:00:56] 2025-10-12 17:00:25,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:00:56] 2025-10-12 17:00:25,828 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:00:56] 2025-10-12 17:00:25,828 | INFO     | update_server=False
[2025-10-12 17:00:56] 2025-10-12 17:00:25,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:00:56] 2025-10-12 17:00:26,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:00:56] 2025-10-12 17:00:26,037 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:00:56] 2025-10-12 17:00:26,037 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:00:56] 2025-10-12 17:00:26,037 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:00:56] 2025-10-12 17:00:26,038 | INFO     | will abort loop
[2025-10-12 17:00:56] 2025-10-12 17:00:26,138 | INFO     | all data control threads have been joined
[2025-10-12 17:00:56] 2025-10-12 17:00:26,396 | INFO     | all payload control threads have been joined
[2025-10-12 17:00:56] 2025-10-12 17:00:26,830 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:26,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:26,957 | INFO     | all job control threads have been joined
[2025-10-12 17:00:56] 2025-10-12 17:00:27,043 | INFO     | [job] validate thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,043 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,142 | INFO     | [data] control thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,256 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,344 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,397 | INFO     | [payload] control thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,495 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,498 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,795 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:27,962 | INFO     | [job] control thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:28,008 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:28,023 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:28,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:00:56] 2025-10-12 17:00:29,094 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:29,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:00:56] 2025-10-12 17:00:33,331 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:00:56] 2025-10-12 17:00:33,866 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:00:56] 2025-10-12 17:00:34,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294918707008)>', '<ExcThread(monitor, started 140294460778240)>']
[2025-10-12 17:00:56] 2025-10-12 17:00:39,187 | INFO     | all workflow threads have been joined
[2025-10-12 17:00:56] 2025-10-12 17:00:39,187 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:00:56] 2025-10-12 17:00:39,187 | INFO     | traces error code: 0
[2025-10-12 17:00:56] 2025-10-12 17:00:39,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:00:56] 2025-10-12 17:00:56,155 | INFO     | PID=1555984 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:00:56] 2025-10-12 17:00:56,155 | INFO     | .. there are 16 such processes running
[2025-10-12 17:00:56] 2025-10-12 17:00:56,155 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:00:56] 2025-10-12 17:00:56,156 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:00:56] 2025-10-12 17:00:56,156 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:00:56] 2025-10-12 17:00:56,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:00:56] 2025-10-12 17:00:56,156 | INFO     | [monitor] control thread has ended
[2025-10-12 17:00:56] 2025-10-12 17:00:56,308 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:00:56] 2025-10-12 17:00:56,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:00:56] 2025-10-12 17:00:56,315 [wrapper] pilotpid: 1555984
[2025-10-12 17:00:56] 2025-10-12 17:00:56,318 [wrapper] Pilot exit status: 0
[2025-10-12 17:00:56] 2025-10-12 17:00:56,330 [wrapper] pandaids: 6839867686
[2025-10-12 17:00:56] 2025-10-12 17:00:56,513 [wrapper] cleanup supervisor_pilot 1919215 1555985
[2025-10-12 17:00:56] 2025-10-12 17:00:56,517 [wrapper] Test setup, not cleaning
[2025-10-12 17:00:56] 2025-10-12 17:00:56,521 [wrapper] apfmon messages muted
[2025-10-12 17:00:56] 2025-10-12 17:00:56,525 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:00:56] 2025-10-12 17:00:56,528 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:00:56]  *** Error codes and diagnostics ***
[2025-10-12 17:00:56]     "exeErrorCode": 0,
[2025-10-12 17:00:56]     "exeErrorDiag": "",
[2025-10-12 17:00:56]     "pilotErrorCode": 0,
[2025-10-12 17:00:56]     "pilotErrorDiag": "",
[2025-10-12 17:00:56]  *** Listing of results directory ***
[2025-10-12 17:00:56] total 409256
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc    557409 Oct 12 10:57 pilot3.tar.gz
[2025-10-12 17:00:56] -rwx------ 1 boinc boinc     36292 Oct 12 10:59 runpilot2-wrapper.sh
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:59 queuedata.json
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc       100 Oct 12 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:00:56] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 16:08 run_atlas
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc       105 Oct 12 16:08 job.xml
[2025-10-12 17:00:56] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:08 start_atlas.sh
[2025-10-12 17:00:56] drwxrwx--x 2 boinc boinc      4096 Oct 12 16:08 shared
[2025-10-12 17:00:56] -rw-r--r-- 2 boinc boinc    569680 Oct 12 16:08 input.tar.gz
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc      9396 Oct 12 16:08 init_data.xml
[2025-10-12 17:00:56] -rw-r--r-- 2 boinc boinc 218801603 Oct 12 16:08 EVNT.46676267._003651.pool.root.1
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:08 boinc_setup_complete
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:08 boinc_lockfile
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc      2547 Oct 12 16:08 pandaJob.out
[2025-10-12 17:00:56] -rw------- 1 boinc boinc    975528 Oct 12 16:08 agis_schedconf.cvmfs.json
[2025-10-12 17:00:56] -rw------- 1 boinc boinc   1560580 Oct 12 16:08 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:00:56] drwx------ 5 boinc boinc      4096 Oct 12 16:08 pilot3
[2025-10-12 17:00:56] -rw------- 1 boinc boinc 194752235 Oct 12 16:59 HITS.46676269._076565.pool.root.1
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc       529 Oct 12 16:59 boinc_task_state.xml
[2025-10-12 17:00:56] -rw------- 1 boinc boinc      1028 Oct 12 17:00 memory_monitor_summary.json
[2025-10-12 17:00:56] -rw------- 1 boinc boinc    347192 Oct 12 17:00 log.46676269._076565.job.log.tgz.1
[2025-10-12 17:00:56] -rw------- 1 boinc boinc        95 Oct 12 17:00 pilot_heartbeat.json
[2025-10-12 17:00:56] -rw------- 1 boinc boinc      7741 Oct 12 17:00 heartbeat.json
[2025-10-12 17:00:56] -rw------- 1 boinc boinc       823 Oct 12 17:00 pilotlog.txt
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:00 boinc_mmap_file
[2025-10-12 17:00:56] -rw------- 1 boinc boinc    462669 Oct 12 17:00 log.46676269._076565.job.log.1
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc        27 Oct 12 17:00 wrapper_checkpoint.txt
[2025-10-12 17:00:56] -rw------- 1 boinc boinc       357 Oct 12 17:00 output.list
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc       620 Oct 12 17:00 runtime_log
[2025-10-12 17:00:56] -rw------- 1 boinc boinc    829440 Oct 12 17:00 result.tar.gz
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc      8672 Oct 12 17:00 runtime_log.err
[2025-10-12 17:00:56] -rw------- 1 boinc boinc       644 Oct 12 17:00 MDgMDmmy8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUXjNDmRWDcUn.diag
[2025-10-12 17:00:56] -rw-r--r-- 1 boinc boinc     22070 Oct 12 17:00 stderr.txt
[2025-10-12 17:00:56] HITS file was successfully produced:
[2025-10-12 17:00:56] -rw------- 1 boinc boinc 194752235 Oct 12 16:59 shared/HITS.pool.root.1
[2025-10-12 17:00:56]  *** Contents of shared directory: ***
[2025-10-12 17:00:56] total 405260
[2025-10-12 17:00:56] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:08 start_atlas.sh
[2025-10-12 17:00:56] -rw-r--r-- 2 boinc boinc    569680 Oct 12 16:08 input.tar.gz
[2025-10-12 17:00:56] -rw-r--r-- 2 boinc boinc 218801603 Oct 12 16:08 ATLAS.root_0
[2025-10-12 17:00:56] -rw------- 1 boinc boinc 194752235 Oct 12 16:59 HITS.pool.root.1
[2025-10-12 17:00:56] -rw------- 1 boinc boinc    829440 Oct 12 17:00 result.tar.gz
17:00:58 (1551294): run_atlas exited; CPU time 33517.127487
17:00:58 (1551294): called boinc_finish(0)

</stderr_txt>
]]>

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