Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:58:44 (5850): wrapper (7.7.26015): starting
16:58:44 (5850): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 16:58:44] Arguments: --nthreads 8
[2025-10-12 16:58:44] Threads: 8
[2025-10-12 16:58:44] Checking for CVMFS
[2025-10-12 16:58:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:58:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:58:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:58:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:58:49] 2.11.2.0 31060 157818 140096 151623 0 108 22714756 25165825 4632 130560 0 96087535 99.912 30971816 3343 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 16:58:49] CVMFS is ok
[2025-10-12 16:58:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:58:49] Checking for apptainer binary...
[2025-10-12 16:58:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:58:49] Running /usr/bin/apptainer --version
[2025-10-12 16:58:49] apptainer version 1.3.2-1.el7
[2025-10-12 16:58:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:59:06] cg-vwn357.simple-grid.lan
[2025-10-12 16:59:06] apptainer works
[2025-10-12 16:59:06] Set ATHENA_PROC_NUMBER=8
[2025-10-12 16:59:06] Set ATHENA_CORE_NUMBER=8
[2025-10-12 16:59:06] Starting ATLAS job with PandaID=6839661205
[2025-10-12 16:59:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:07:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:07:22] 2025-10-12 19:06:09,642 | INFO     | sum of square deviations: 4233158440.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,648 | INFO     | sum of deviations: 39048181259.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,649 | INFO     | mean x: 1760288571.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,649 | INFO     | mean y: 2458001.9037656905
[2025-10-12 21:07:22] 2025-10-12 19:06:09,649 | INFO     | -- intersect: -16235079090.743795
[2025-10-12 21:07:22] 2025-10-12 19:06:09,649 | INFO     | intersect: -16235079090.743795
[2025-10-12 21:07:22] 2025-10-12 19:06:09,649 | INFO     | chi2: 2.4711110326551258
[2025-10-12 21:07:22] 2025-10-12 19:06:09,650 | INFO     | sum of square deviations: 3972995422.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,652 | INFO     | sum of deviations: 53622816556.499985
[2025-10-12 21:07:22] 2025-10-12 19:06:09,652 | INFO     | mean x: 1760288418.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,652 | INFO     | mean y: 2466387.6196581195
[2025-10-12 21:07:22] 2025-10-12 19:06:09,652 | INFO     | -- intersect: -23755835073.588978
[2025-10-12 21:07:22] 2025-10-12 19:06:09,652 | INFO     | intersect: -23755835073.588978
[2025-10-12 21:07:22] 2025-10-12 19:06:09,653 | INFO     | chi2: 1.6979194787619054
[2025-10-12 21:07:22] 2025-10-12 19:06:09,653 | INFO     | current chi2=1.6979194787619054 (change=31.289227544844557 %)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,653 | INFO     | sum of square deviations: 3723716330.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,655 | INFO     | sum of deviations: 52088628157.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,655 | INFO     | mean x: 1760288266.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,655 | INFO     | mean y: 2465448.9257641924
[2025-10-12 21:07:22] 2025-10-12 19:06:09,656 | INFO     | -- intersect: -24621053855.726612
[2025-10-12 21:07:22] 2025-10-12 19:06:09,656 | INFO     | intersect: -24621053855.726612
[2025-10-12 21:07:22] 2025-10-12 19:06:09,656 | INFO     | chi2: 1.6985396996504403
[2025-10-12 21:07:22] 2025-10-12 19:06:09,656 | INFO     | current chi2=1.6985396996504403 (change=-0.03652828631114569 %)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,656 | INFO     | right removable region: 228
[2025-10-12 21:07:22] 2025-10-12 19:06:09,657 | INFO     | sum of square deviations: 3972995422.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,659 | INFO     | sum of deviations: -3512536312.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,659 | INFO     | mean x: 1760288723.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,659 | INFO     | mean y: 2482757.5512820515
[2025-10-12 21:07:22] 2025-10-12 19:06:09,659 | INFO     | -- intersect: 1558758918.0426354
[2025-10-12 21:07:22] 2025-10-12 19:06:09,659 | INFO     | intersect: 1558758918.0426354
[2025-10-12 21:07:22] 2025-10-12 19:06:09,660 | INFO     | chi2: 0.8207301098272373
[2025-10-12 21:07:22] 2025-10-12 19:06:09,660 | INFO     | current chi2=0.8207301098272373 (change=66.78699989674725 %)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,660 | INFO     | sum of square deviations: 3723716330.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,662 | INFO     | sum of deviations: 110327711.00000763
[2025-10-12 21:07:22] 2025-10-12 19:06:09,662 | INFO     | mean x: 1760288876.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,662 | INFO     | mean y: 2480509.0262008733
[2025-10-12 21:07:22] 2025-10-12 19:06:09,662 | INFO     | -- intersect: -49674012.20389944
[2025-10-12 21:07:22] 2025-10-12 19:06:09,662 | INFO     | intersect: -49674012.20389944
[2025-10-12 21:07:22] 2025-10-12 19:06:09,663 | INFO     | chi2: 0.7952156643475677
[2025-10-12 21:07:22] 2025-10-12 19:06:09,663 | INFO     | current chi2=0.7952156643475677 (change=3.108749779515252 %)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,663 | INFO     | left removable region: 20
[2025-10-12 21:07:22] 2025-10-12 19:06:09,670 | INFO     | sum of square deviations: 2790348132.0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,671 | INFO     | sum of deviations: 10893259067.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,672 | INFO     | mean x: 1760288845.5
[2025-10-12 21:07:22] 2025-10-12 19:06:09,672 | INFO     | mean y: 2491511.360576923
[2025-10-12 21:07:22] 2025-10-12 19:06:09,672 | INFO     | -- intersect: -6869512095.55781
[2025-10-12 21:07:22] 2025-10-12 19:06:09,672 | INFO     | intersect: -6869512095.55781
[2025-10-12 21:07:22] 2025-10-12 19:06:09,672 | INFO     | chi2: 0.00044093606813069624
[2025-10-12 21:07:22] 2025-10-12 19:06:09,673 | INFO     | -- intersect: -6869512095.55781
[2025-10-12 21:07:22] 2025-10-12 19:06:09,673 | INFO     | current memory leak: 3.90 B/s (using 208 data points, chi2=0.00)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,673 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | ..............................
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . Timing measurements:
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . get job = 0 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . initial setup = 3 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . payload setup = 13 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . stage-in = 0 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . payload execution = 14576 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . stage-out = 3 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | . log creation = 1 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,674 | INFO     | ..............................
[2025-10-12 21:07:22] 2025-10-12 19:06:09,802 | INFO     | 
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | job summary report
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | --------------------------------------------------
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | PanDA job id: 6839661205
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | task id: 46676269
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | errors: (none)
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 21:07:22] 2025-10-12 19:06:09,803 | INFO     | pilot state: finished 
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | transexitcode: 0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | exeerrorcode: 0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | exeerrordiag: 
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | exitcode: 0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | exitmsg: OK
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | cpuconsumptiontime: 55953 s
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | nevents: 400
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | neventsw: 0
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | pid: 16533
[2025-10-12 21:07:22] 2025-10-12 19:06:09,804 | INFO     | pgrp: 16533
[2025-10-12 21:07:22] 2025-10-12 19:06:09,805 | INFO     | corecount: 8
[2025-10-12 21:07:22] 2025-10-12 19:06:09,805 | INFO     | event service: False
[2025-10-12 21:07:22] 2025-10-12 19:06:09,805 | INFO     | sizes: {0: 2348029, 1: 2348715, 2: 2348914, 11: 2349176, 13: 2349204, 14594: 2379490, 14595: 2379617, 14600: 2388673, 14601: 2388729, 14700: 2388923}
[2025-10-12 21:07:22] 2025-10-12 19:06:09,805 | INFO     | --------------------------------------------------
[2025-10-12 21:07:22] 2025-10-12 19:06:09,805 | INFO     | 
[2025-10-12 21:07:22] 2025-10-12 19:06:09,805 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-12 21:07:22] 2025-10-12 19:06:09,844 | INFO     | time since job start (14723s) is within the limit (172800.0s)
[2025-10-12 21:07:22] 2025-10-12 19:06:10,356 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,356 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,356 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,356 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | job 6839661205 has completed (purged errors)
[2025-10-12 21:07:22] 2025-10-12 19:06:10,358 | INFO     | overall cleanup function is called
[2025-10-12 21:07:22] 2025-10-12 19:06:11,008 | INFO     | PID=10001 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:07:22] 2025-10-12 19:06:11,008 | INFO     | .. there are 9 such processes running
[2025-10-12 21:07:22] 2025-10-12 19:06:11,367 | INFO     | --- collectZombieJob: --- 10, [16533]
[2025-10-12 21:07:22] 2025-10-12 19:06:11,368 | INFO     | zombie collector waiting for pid 16533
[2025-10-12 21:07:22] 2025-10-12 19:06:11,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:07:22] 2025-10-12 19:06:11,368 | INFO     | collected zombie processes
[2025-10-12 21:07:22] 2025-10-12 19:06:11,368 | INFO     | will attempt to kill all subprocesses of pid=16533
[2025-10-12 21:07:22] 2025-10-12 19:06:11,489 | INFO     | process IDs to be killed: [16533] (in reverse order)
[2025-10-12 21:07:22] 2025-10-12 19:06:12,373 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:07:22] 2025-10-12 19:06:12,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:07:22] 2025-10-12 19:06:12,376 | INFO     | did not find any defunct processes belonging to 16533
[2025-10-12 21:07:22] 2025-10-12 19:06:12,380 | INFO     | did not find any defunct processes belonging to 16533
[2025-10-12 21:07:22] 2025-10-12 19:06:12,380 | INFO     | ready for new job
[2025-10-12 21:07:22] 2025-10-12 19:06:12,380 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:07:22] 2025-10-12 19:06:12,383 | INFO     | ***************************************
[2025-10-12 21:07:22] 2025-10-12 19:06:12,383 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:07:22] 2025-10-12 19:06:12,383 | INFO     | ***************************************
[2025-10-12 21:07:22] 2025-10-12 19:06:12,383 | INFO     | 
[2025-10-12 21:07:22] 2025-10-12 19:06:12,384 | INFO     | pilot is running in a VM
[2025-10-12 21:07:22] 2025-10-12 19:06:12,384 | INFO     | architecture information:
[2025-10-12 21:07:22] 2025-10-12 19:06:12,394 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:07:22] 2025-10-12 19:06:12,668 | INFO     | cat /etc/os-release:
[2025-10-12 21:07:22] NAME="CentOS Linux"
[2025-10-12 21:07:22] VERSION="7 (Core)"
[2025-10-12 21:07:22] ID="centos"
[2025-10-12 21:07:22] ID_LIKE="rhel fedora"
[2025-10-12 21:07:22] VERSION_ID="7"
[2025-10-12 21:07:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:07:22] ANSI_COLOR="0;31"
[2025-10-12 21:07:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:07:22] HOME_URL="https://www.centos.org/"
[2025-10-12 21:07:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:07:22] 
[2025-10-12 21:07:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:07:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:07:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:07:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:07:22] 
[2025-10-12 21:07:22] 2025-10-12 19:06:12,668 | INFO     | ***************************************
[2025-10-12 21:07:22] 2025-10-12 19:06:13,172 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-12 21:07:22] 2025-10-12 19:06:13,312 | INFO     | sufficient remaining disk space (495066284032 B)
[2025-10-12 21:07:22] 2025-10-12 19:06:13,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:07:22] 2025-10-12 19:06:13,313 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:07:22] 2025-10-12 19:06:13,313 | INFO     | update_server=False
[2025-10-12 21:07:22] 2025-10-12 19:06:13,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:07:22] 2025-10-12 19:06:13,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:07:22] 2025-10-12 19:06:13,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:07:22] 2025-10-12 19:06:13,916 | INFO     | aborting loop
[2025-10-12 21:07:22] 2025-10-12 19:06:14,189 | INFO     | all payload control threads have been joined
[2025-10-12 21:07:22] 2025-10-12 19:06:14,289 | INFO     | all data control threads have been joined
[2025-10-12 21:07:22] 2025-10-12 19:06:14,319 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:14,550 | INFO     | [job] validate thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:14,637 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:14,684 | INFO     | all job control threads have been joined
[2025-10-12 21:07:22] 2025-10-12 19:06:14,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:07:22] 2025-10-12 19:06:14,922 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,006 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,024 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,119 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,135 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,196 | INFO     | [payload] control thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,295 | INFO     | [data] control thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,320 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,393 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,500 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,690 | INFO     | [job] control thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:15,821 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:16,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:07:22] 2025-10-12 19:06:20,213 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:07:22] 2025-10-12 19:06:43,168 | INFO     | PID=10001 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 21:07:22] 2025-10-12 19:06:43,169 | INFO     | .. there are 9 such processes running
[2025-10-12 21:07:22] 2025-10-12 19:06:43,169 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:07:22] 2025-10-12 19:06:43,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:07:22] 2025-10-12 19:06:43,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:07:22] 2025-10-12 19:07:11,375 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:07:22] 2025-10-12 19:07:12,555 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140143270520640)>', '<ExcThread(monitor, started 140142677313280)>']
[2025-10-12 21:07:22] 2025-10-12 19:07:13,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:07:22] 2025-10-12 19:07:13,350 | INFO     | [monitor] control thread has ended
[2025-10-12 21:07:22] 2025-10-12 19:07:17,581 | INFO     | all workflow threads have been joined
[2025-10-12 21:07:22] 2025-10-12 19:07:17,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:07:22] 2025-10-12 19:07:17,582 | INFO     | traces error code: 0
[2025-10-12 21:07:22] 2025-10-12 19:07:17,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:07:22] 2025-10-12 19:07:18,047 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:07:22] 2025-10-12 19:07:18,146 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:07:22] 2025-10-12 19:07:18,255 [wrapper] pilotpid: 10001
[2025-10-12 21:07:22] 2025-10-12 19:07:18,356 [wrapper] Pilot exit status: 0
[2025-10-12 21:07:22] 2025-10-12 19:07:18,808 [wrapper] pandaids: 6839661205
[2025-10-12 21:07:22] 2025-10-12 19:07:19,487 [wrapper] cleanup supervisor_pilot 29503 10002
[2025-10-12 21:07:22] 2025-10-12 19:07:19,611 [wrapper] Test setup, not cleaning
[2025-10-12 21:07:22] 2025-10-12 19:07:19,668 [wrapper] apfmon messages muted
[2025-10-12 21:07:22] 2025-10-12 19:07:19,736 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:07:22] 2025-10-12 19:07:19,834 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:07:22]  *** Error codes and diagnostics ***
[2025-10-12 21:07:22]     "exeErrorCode": 0,
[2025-10-12 21:07:22]     "exeErrorDiag": "",
[2025-10-12 21:07:22]     "pilotErrorCode": 0,
[2025-10-12 21:07:22]     "pilotErrorDiag": "",
[2025-10-12 21:07:22]  *** Listing of results directory ***
[2025-10-12 21:07:22] total 417160
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc    557409 Oct 12 09:58 pilot3.tar.gz
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc      5112 Oct 12 10:35 queuedata.json
[2025-10-12 21:07:22] -rwx------. 1 boinc boinc     36292 Oct 12 10:35 runpilot2-wrapper.sh
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc       100 Oct 12 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:07:22] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 16:58 run_atlas
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc       105 Oct 12 16:58 job.xml
[2025-10-12 21:07:22] -rw-r--r--. 2 boinc boinc 220120795 Oct 12 16:58 EVNT.46676267._003536.pool.root.1
[2025-10-12 21:07:22] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:58 start_atlas.sh
[2025-10-12 21:07:22] drwxrwx--x. 2 boinc boinc        68 Oct 12 16:58 shared
[2025-10-12 21:07:22] -rw-r--r--. 2 boinc boinc    569681 Oct 12 16:58 input.tar.gz
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc      6384 Oct 12 16:58 init_data.xml
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc         0 Oct 12 16:58 boinc_lockfile
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc      2550 Oct 12 16:59 pandaJob.out
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc    975528 Oct 12 17:00 agis_schedconf.cvmfs.json
[2025-10-12 21:07:22] drwx------. 5 boinc boinc      4096 Oct 12 17:00 pilot3
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc 198269609 Oct 12 21:03 HITS.46676269._074319.pool.root.1
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc       531 Oct 12 21:03 boinc_task_state.xml
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc      1019 Oct 12 21:04 memory_monitor_summary.json
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc   1560580 Oct 12 21:04 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc    454470 Oct 12 21:04 log.46676269._074319.job.log.tgz.1
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc        95 Oct 12 21:05 pilot_heartbeat.json
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc      7781 Oct 12 21:06 heartbeat.json
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc      8192 Oct 12 21:07 boinc_mmap_file
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc        28 Oct 12 21:07 wrapper_checkpoint.txt
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc      4885 Oct 12 21:07 pilotlog.txt
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc   1990151 Oct 12 21:07 log.46676269._074319.job.log.1
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc       357 Oct 12 21:07 output.list
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc       620 Oct 12 21:07 runtime_log
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc   2467840 Oct 12 21:07 result.tar.gz
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc       657 Oct 12 21:07 ummKDmRj6R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmr9iNDmhwfAgn.diag
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc      8717 Oct 12 21:07 runtime_log.err
[2025-10-12 21:07:22] -rw-r--r--. 1 boinc boinc     20757 Oct 12 21:07 stderr.txt
[2025-10-12 21:07:22] HITS file was successfully produced:
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc 198269609 Oct 12 21:03 shared/HITS.pool.root.1
[2025-10-12 21:07:22]  *** Contents of shared directory: ***
[2025-10-12 21:07:22] total 411576
[2025-10-12 21:07:22] -rw-r--r--. 2 boinc boinc 220120795 Oct 12 16:58 ATLAS.root_0
[2025-10-12 21:07:22] -rw-r--r--. 2 boinc boinc     15120 Oct 12 16:58 start_atlas.sh
[2025-10-12 21:07:22] -rw-r--r--. 2 boinc boinc    569681 Oct 12 16:58 input.tar.gz
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc 198269609 Oct 12 21:03 HITS.pool.root.1
[2025-10-12 21:07:22] -rw-------. 1 boinc boinc   2467840 Oct 12 21:07 result.tar.gz
21:07:23 (5850): run_atlas exited; CPU time 56150.170514
21:07:23 (5850): called boinc_finish(0)

</stderr_txt>
]]>

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