Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:31:25 (14163): wrapper (7.7.26015): starting
01:31:25 (14163): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:31:25] Arguments: --nthreads 8
[2025-10-13 01:31:25] Threads: 8
[2025-10-13 01:31:25] Checking for CVMFS
[2025-10-13 01:31:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:31:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:31:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:31:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:31:27] 2.11.2.0 320 221268 138004 151641 0 61 24673420 25165824 4632 130560 0 124170117 99.874 75015468 3406 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 01:31:27] CVMFS is ok
[2025-10-13 01:31:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:31:27] Checking for apptainer binary...
[2025-10-13 01:31:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:31:27] Running /usr/bin/apptainer --version
[2025-10-13 01:31:27] apptainer version 1.3.2-1.el7
[2025-10-13 01:31:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:31:41] cg-vwn219.simple-grid.lan
[2025-10-13 01:31:41] apptainer works
[2025-10-13 01:31:41] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:31:41] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:31:41] Starting ATLAS job with PandaID=6839871009
[2025-10-13 01:31:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:42:56]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:42:56] 2025-10-13 03:41:44,786 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:42:56] 2025-10-13 03:41:44,787 | INFO     | sum of square deviations: 3922276332.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,789 | INFO     | sum of deviations: 65322257480.000015
[2025-10-13 05:42:56] 2025-10-13 03:41:44,789 | INFO     | mean x: 1760319661.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,789 | INFO     | mean y: 2442136.3862660946
[2025-10-13 05:42:56] 2025-10-13 03:41:44,789 | INFO     | -- intersect: -29314221048.411583
[2025-10-13 05:42:56] 2025-10-13 03:41:44,790 | INFO     | intersect: -29314221048.411583
[2025-10-13 05:42:56] 2025-10-13 03:41:44,790 | INFO     | chi2: 6.5695295953822415
[2025-10-13 05:42:56] 2025-10-13 03:41:44,790 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,792 | INFO     | sum of deviations: 79632030625.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | mean x: 1760319508.5
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | mean y: 2450792.5701754387
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | -- intersect: -38139656363.99732
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | intersect: -38139656363.99732
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | chi2: 5.783657692473423
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | current chi2=5.783657692473423 (change=11.962377084977467 %)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,793 | INFO     | right removable region: 227
[2025-10-13 05:42:56] 2025-10-13 03:41:44,794 | INFO     | sum of square deviations: 3675146117.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,799 | INFO     | sum of deviations: -13924170520.5
[2025-10-13 05:42:56] 2025-10-13 03:41:44,799 | INFO     | mean x: 1760319813.5
[2025-10-13 05:42:56] 2025-10-13 03:41:44,799 | INFO     | mean y: 2490986.899122807
[2025-10-13 05:42:56] 2025-10-13 03:41:44,800 | INFO     | -- intersect: 6671883841.895848
[2025-10-13 05:42:56] 2025-10-13 03:41:44,800 | INFO     | intersect: 6671883841.895848
[2025-10-13 05:42:56] 2025-10-13 03:41:44,800 | INFO     | chi2: 1.9361952617223985
[2025-10-13 05:42:56] 2025-10-13 03:41:44,800 | INFO     | current chi2=1.9361952617223985 (change=70.5276422975039 %)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,801 | INFO     | sum of square deviations: 3438620752.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,802 | INFO     | sum of deviations: -42783450684.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,803 | INFO     | mean x: 1760319966.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,803 | INFO     | mean y: 2509435.121076233
[2025-10-13 05:42:56] 2025-10-13 03:41:44,803 | INFO     | -- intersect: 21904477661.66005
[2025-10-13 05:42:56] 2025-10-13 03:41:44,803 | INFO     | intersect: 21904477661.66005
[2025-10-13 05:42:56] 2025-10-13 03:41:44,803 | INFO     | chi2: 1.0410884991043496
[2025-10-13 05:42:56] 2025-10-13 03:41:44,803 | INFO     | current chi2=1.0410884991043496 (change=46.23019074128819 %)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,804 | INFO     | sum of square deviations: 3212467674.5
[2025-10-13 05:42:56] 2025-10-13 03:41:44,806 | INFO     | sum of deviations: -36123970579.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,806 | INFO     | mean x: 1760320118.5
[2025-10-13 05:42:56] 2025-10-13 03:41:44,806 | INFO     | mean y: 2504934.4311926607
[2025-10-13 05:42:56] 2025-10-13 03:41:44,806 | INFO     | -- intersect: 19797179500.366905
[2025-10-13 05:42:56] 2025-10-13 03:41:44,808 | INFO     | intersect: 19797179500.366905
[2025-10-13 05:42:56] 2025-10-13 03:41:44,809 | INFO     | chi2: 1.0265458103725353
[2025-10-13 05:42:56] 2025-10-13 03:41:44,809 | INFO     | current chi2=1.0265458103725353 (change=1.396873440089426 %)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,809 | INFO     | left removable region: 30
[2025-10-13 05:42:56] 2025-10-13 03:41:44,809 | INFO     | sum of square deviations: 2370641658.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,811 | INFO     | sum of deviations: 2316545028.000001
[2025-10-13 05:42:56] 2025-10-13 03:41:44,811 | INFO     | mean x: 1760320393.0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,811 | INFO     | mean y: 2497661.228426396
[2025-10-13 05:42:56] 2025-10-13 03:41:44,811 | INFO     | -- intersect: -1717653269.3561053
[2025-10-13 05:42:56] 2025-10-13 03:41:44,811 | INFO     | intersect: -1717653269.3561053
[2025-10-13 05:42:56] 2025-10-13 03:41:44,812 | INFO     | chi2: 0.03875017098137961
[2025-10-13 05:42:56] 2025-10-13 03:41:44,812 | INFO     | -- intersect: -1717653269.3561053
[2025-10-13 05:42:56] 2025-10-13 03:41:44,812 | INFO     | current memory leak: 0.98 B/s (using 197 data points, chi2=0.04)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | ..............................
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | . Timing measurements:
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | . get job = 0 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | . initial setup = 7 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | . payload setup = 126 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | . stage-in = 0 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,813 | INFO     | . payload execution = 14367 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,814 | INFO     | . stage-out = 2 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,814 | INFO     | . log creation = 0 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,814 | INFO     | ..............................
[2025-10-13 05:42:56] 2025-10-13 03:41:44,815 | INFO     | time since job start (14783s) is within the limit (172800.0s)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,816 | INFO     | 14790s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 05:42:56] 2025-10-13 03:41:44,985 | INFO     | 
[2025-10-13 05:42:56] 2025-10-13 03:41:44,985 | INFO     | job summary report
[2025-10-13 05:42:56] 2025-10-13 03:41:44,985 | INFO     | --------------------------------------------------
[2025-10-13 05:42:56] 2025-10-13 03:41:44,985 | INFO     | PanDA job id: 6839871009
[2025-10-13 05:42:56] 2025-10-13 03:41:44,985 | INFO     | task id: 46676269
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | errors: (none)
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | pilot state: finished 
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | transexitcode: 0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | exeerrorcode: 0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | exeerrordiag: 
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | exitcode: 0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | exitmsg: OK
[2025-10-13 05:42:56] 2025-10-13 03:41:44,986 | INFO     | cpuconsumptiontime: 53669 s
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | nevents: 400
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | neventsw: 0
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | pid: 24484
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | pgrp: 24484
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | corecount: 8
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | event service: False
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | sizes: {0: 2348630, 1: 2348885, 12: 2348885, 23: 2348913, 34: 2348941, 44: 2348969, 55: 2349125, 66: 2349153, 77: 2349181, 85: 2349499, 87: 2349527, 14498: 2379911
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | --------------------------------------------------
[2025-10-13 05:42:56] 2025-10-13 03:41:44,987 | INFO     | 
[2025-10-13 05:42:56] 2025-10-13 03:41:44,988 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,618 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,619 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:42:56] 2025-10-13 03:41:45,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:42:56] 2025-10-13 03:41:45,620 | INFO     | job 6839871009 has completed (purged errors)
[2025-10-13 05:42:56] 2025-10-13 03:41:45,620 | INFO     | overall cleanup function is called
[2025-10-13 05:42:56] 2025-10-13 03:41:46,628 | INFO     | --- collectZombieJob: --- 10, [24484]
[2025-10-13 05:42:56] 2025-10-13 03:41:46,629 | INFO     | zombie collector waiting for pid 24484
[2025-10-13 05:42:56] 2025-10-13 03:41:46,629 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:42:56] 2025-10-13 03:41:46,629 | INFO     | collected zombie processes
[2025-10-13 05:42:56] 2025-10-13 03:41:46,629 | INFO     | will attempt to kill all subprocesses of pid=24484
[2025-10-13 05:42:56] 2025-10-13 03:41:46,764 | INFO     | process IDs to be killed: [24484] (in reverse order)
[2025-10-13 05:42:56] 2025-10-13 03:41:47,372 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:42:56] 2025-10-13 03:41:47,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:42:56] 2025-10-13 03:41:47,375 | INFO     | did not find any defunct processes belonging to 24484
[2025-10-13 05:42:56] 2025-10-13 03:41:47,377 | INFO     | did not find any defunct processes belonging to 24484
[2025-10-13 05:42:56] 2025-10-13 03:41:47,378 | INFO     | ready for new job
[2025-10-13 05:42:56] 2025-10-13 03:41:47,378 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:42:56] 2025-10-13 03:41:47,380 | INFO     | ***************************************
[2025-10-13 05:42:56] 2025-10-13 03:41:47,380 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:42:56] 2025-10-13 03:41:47,380 | INFO     | ***************************************
[2025-10-13 05:42:56] 2025-10-13 03:41:47,380 | INFO     | 
[2025-10-13 05:42:56] 2025-10-13 03:41:47,380 | INFO     | pilot is running in a VM
[2025-10-13 05:42:56] 2025-10-13 03:41:47,381 | INFO     | architecture information:
[2025-10-13 05:42:56] 2025-10-13 03:41:47,387 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:42:56] 2025-10-13 03:41:47,503 | INFO     | cat /etc/os-release:
[2025-10-13 05:42:56] NAME="CentOS Linux"
[2025-10-13 05:42:56] VERSION="7 (Core)"
[2025-10-13 05:42:56] ID="centos"
[2025-10-13 05:42:56] ID_LIKE="rhel fedora"
[2025-10-13 05:42:56] VERSION_ID="7"
[2025-10-13 05:42:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:42:56] ANSI_COLOR="0;31"
[2025-10-13 05:42:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:42:56] HOME_URL="https://www.centos.org/"
[2025-10-13 05:42:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:42:56] 
[2025-10-13 05:42:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:42:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:42:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:42:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:42:56] 
[2025-10-13 05:42:56] 2025-10-13 03:41:47,503 | INFO     | ***************************************
[2025-10-13 05:42:56] 2025-10-13 03:41:48,006 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-13 05:42:56] 2025-10-13 03:41:48,148 | INFO     | sufficient remaining disk space (495705915392 B)
[2025-10-13 05:42:56] 2025-10-13 03:41:48,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:42:56] 2025-10-13 03:41:48,148 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:42:56] 2025-10-13 03:41:48,148 | INFO     | update_server=False
[2025-10-13 05:42:56] 2025-10-13 03:41:48,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:42:56] 2025-10-13 03:41:48,357 | INFO     | all job control threads have been joined
[2025-10-13 05:42:56] 2025-10-13 03:41:48,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:42:56] 2025-10-13 03:41:48,446 | INFO     | aborting loop
[2025-10-13 05:42:56] 2025-10-13 03:41:48,875 | INFO     | all data control threads have been joined
[2025-10-13 05:42:56] 2025-10-13 03:41:48,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:42:56] 2025-10-13 03:41:49,154 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,223 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,334 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,351 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,363 | INFO     | [job] control thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,379 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,430 | INFO     | all payload control threads have been joined
[2025-10-13 05:42:56] 2025-10-13 03:41:49,455 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,706 | INFO     | [job] validate thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,743 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:49,881 | INFO     | [data] control thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:50,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:42:56] 2025-10-13 03:41:50,415 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:50,437 | INFO     | [payload] control thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:50,452 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:50,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:42:56] 2025-10-13 03:41:50,949 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:51,006 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:41:54,566 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:42:56] 2025-10-13 03:42:17,988 | INFO     | PID=17906 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:42:56] 2025-10-13 03:42:17,988 | INFO     | .. there are 9 such processes running
[2025-10-13 05:42:56] 2025-10-13 03:42:17,990 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:42:56] 2025-10-13 03:42:17,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:42:56] 2025-10-13 03:42:17,990 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:42:56] 2025-10-13 03:42:46,644 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:42:56] 2025-10-13 03:42:48,092 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215026407232)>', '<ExcThread(monitor, started 140214366365440)>']
[2025-10-13 05:42:56] 2025-10-13 03:42:48,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:42:56] 2025-10-13 03:42:48,169 | INFO     | [monitor] control thread has ended
[2025-10-13 05:42:56] 2025-10-13 03:42:53,118 | INFO     | all workflow threads have been joined
[2025-10-13 05:42:56] 2025-10-13 03:42:53,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:42:56] 2025-10-13 03:42:53,119 | INFO     | traces error code: 0
[2025-10-13 05:42:56] 2025-10-13 03:42:53,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:42:56] 2025-10-13 03:42:53,371 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:42:56] 2025-10-13 03:42:53,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:42:56] 2025-10-13 03:42:53,387 [wrapper] pilotpid: 17906
[2025-10-13 05:42:56] 2025-10-13 03:42:53,391 [wrapper] Pilot exit status: 0
[2025-10-13 05:42:56] 2025-10-13 03:42:53,472 [wrapper] pandaids: 6839871009
[2025-10-13 05:42:56] 2025-10-13 03:42:54,489 [wrapper] cleanup supervisor_pilot  1574 17907
[2025-10-13 05:42:56] 2025-10-13 03:42:54,530 [wrapper] Test setup, not cleaning
[2025-10-13 05:42:56] 2025-10-13 03:42:54,602 [wrapper] apfmon messages muted
[2025-10-13 05:42:56] 2025-10-13 03:42:54,706 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:42:56] 2025-10-13 03:42:54,803 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:42:56]  *** Error codes and diagnostics ***
[2025-10-13 05:42:56]     "exeErrorCode": 0,
[2025-10-13 05:42:56]     "exeErrorDiag": "",
[2025-10-13 05:42:56]     "pilotErrorCode": 0,
[2025-10-13 05:42:56]     "pilotErrorDiag": "",
[2025-10-13 05:42:56]  *** Listing of results directory ***
[2025-10-13 05:42:56] total 407976
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc    557409 Oct 12 13:23 pilot3.tar.gz
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:36 queuedata.json
[2025-10-13 05:42:56] -rwx------. 1 boinc boinc     36292 Oct 12 13:36 runpilot2-wrapper.sh
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc       100 Oct 13 01:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:42:56] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 01:31 run_atlas
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc       105 Oct 13 01:31 job.xml
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc      6390 Oct 13 01:31 init_data.xml
[2025-10-13 05:42:56] -rw-r--r--. 2 boinc boinc 221164308 Oct 13 01:31 EVNT.46676267._003702.pool.root.1
[2025-10-13 05:42:56] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:31 start_atlas.sh
[2025-10-13 05:42:56] drwxrwx--x. 2 boinc boinc        68 Oct 13 01:31 shared
[2025-10-13 05:42:56] -rw-r--r--. 2 boinc boinc    569686 Oct 13 01:31 input.tar.gz
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc         0 Oct 13 01:31 boinc_lockfile
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc      2550 Oct 13 01:31 pandaJob.out
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc    975603 Oct 13 01:35 agis_schedconf.cvmfs.json
[2025-10-13 05:42:56] drwx------. 5 boinc boinc      4096 Oct 13 01:35 pilot3
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc 187851463 Oct 13 05:38 HITS.46676269._077246.pool.root.1
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc       531 Oct 13 05:39 boinc_task_state.xml
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc      1017 Oct 13 05:39 memory_monitor_summary.json
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc   1560580 Oct 13 05:39 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc    453775 Oct 13 05:40 log.46676269._077246.job.log.tgz.1
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc      7775 Oct 13 05:41 heartbeat.json
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc        95 Oct 13 05:42 pilot_heartbeat.json
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:42 boinc_mmap_file
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc        28 Oct 13 05:42 wrapper_checkpoint.txt
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc      4884 Oct 13 05:42 pilotlog.txt
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc   1974663 Oct 13 05:42 log.46676269._077246.job.log.1
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc       357 Oct 13 05:42 output.list
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:42 runtime_log
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc   2447360 Oct 13 05:42 result.tar.gz
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc       656 Oct 13 05:42 xLlLDmoY9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrejNDm4SpO5m.diag
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc      8703 Oct 13 05:42 runtime_log.err
[2025-10-13 05:42:56] -rw-r--r--. 1 boinc boinc     20660 Oct 13 05:42 stderr.txt
[2025-10-13 05:42:56] HITS file was successfully produced:
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc 187851463 Oct 13 05:38 shared/HITS.pool.root.1
[2025-10-13 05:42:56]  *** Contents of shared directory: ***
[2025-10-13 05:42:56] total 402404
[2025-10-13 05:42:56] -rw-r--r--. 2 boinc boinc 221164308 Oct 13 01:31 ATLAS.root_0
[2025-10-13 05:42:56] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:31 start_atlas.sh
[2025-10-13 05:42:56] -rw-r--r--. 2 boinc boinc    569686 Oct 13 01:31 input.tar.gz
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc 187851463 Oct 13 05:38 HITS.pool.root.1
[2025-10-13 05:42:56] -rw-------. 1 boinc boinc   2447360 Oct 13 05:42 result.tar.gz
05:42:57 (14163): run_atlas exited; CPU time 53885.653915
05:42:57 (14163): called boinc_finish(0)

</stderr_txt>
]]>

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