Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
16:53:02 (1119932): wrapper (7.7.26015): starting
16:53:02 (1119932): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 16:53:02] Arguments: --nthreads 12
[2025-10-12 16:53:02] Threads: 12
[2025-10-12 16:53:02] Checking for CVMFS
[2025-10-12 16:53:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:53:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:53:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:53:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:53:02] 2.13.2.0 880902 438 47572 151623 2 57 3180853 4096001 0 130560 0 616298 99.995 14764 1343 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-10-12 16:53:02] CVMFS is ok
[2025-10-12 16:53:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:53:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 16:53:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 16:53:02] Further information can be found at the LHC@home message board.
[2025-10-12 16:53:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:53:02] Checking for apptainer binary...
[2025-10-12 16:53:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:53:02] Running /usr/bin/apptainer --version
[2025-10-12 16:53:02] apptainer version 1.4.3
[2025-10-12 16:53:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:53:02] tito-MS-7C02
[2025-10-12 16:53:02] apptainer works
[2025-10-12 16:53:02] Set ATHENA_PROC_NUMBER=12
[2025-10-12 16:53:02] Set ATHENA_CORE_NUMBER=12
[2025-10-12 16:53:02] Starting ATLAS job with PandaID=6839870098
[2025-10-12 16:53:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:35:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:35:19]  scope=mc23_13p6TeV
[2025-10-12 17:35:19]  status=None
[2025-10-12 17:35:19]  status_code=0
[2025-10-12 17:35:19]  storage_token=
[2025-10-12 17:35:19]  surl=/var/lib/boinc-client/slots/26/PanDA_Pilot-6839870098/log.46676269._077072.job.log.tgz.1
[2025-10-12 17:35:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/0a/log.46676269._077072.job.log.tgz.1
[2025-10-12 17:35:19]  workdir=None
[2025-10-12 17:35:19] ]
[2025-10-12 17:35:19] 2025-10-12 15:34:35,744 | INFO     | transferring file log.46676269._077072.job.log.tgz.1 from /var/lib/boinc-client/slots/26/PanDA_Pilot-6839870098/log.46676269._077072.job.log.tgz.1 to /var/lib/boin
[2025-10-12 17:35:19] 2025-10-12 15:34:35,744 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/26/PanDA_Pilot-6839870098/log.46676269._077072.job.log.tgz.1 /var/lib/boinc-client/slots/26/log.4667
[2025-10-12 17:35:19] 2025-10-12 15:34:35,758 | INFO     | adding to output.list: log.46676269._077072.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/0a/log.46676269._077072.job.log.tg
[2025-10-12 17:35:19] 2025-10-12 15:34:35,758 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:35:19] 2025-10-12 15:34:35,758 | INFO     | summary of transferred files:
[2025-10-12 17:35:19] 2025-10-12 15:34:35,758 | INFO     |  -- lfn=log.46676269._077072.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:35:19] 2025-10-12 15:34:35,758 | INFO     | stage-out finished correctly
[2025-10-12 17:35:19] 2025-10-12 15:34:35,873 | INFO     | time since job start (2486s) is within the limit (172800.0s)
[2025-10-12 17:35:19] 2025-10-12 15:34:36,668 | INFO     | monitor loop #192: job 0:6839870098 is in state 'finished'
[2025-10-12 17:35:19] 2025-10-12 15:34:36,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:35:19] 2025-10-12 15:34:37,108 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:35:19] 2025-10-12 15:34:37,878 | INFO     | time since job start (2488s) is within the limit (172800.0s)
[2025-10-12 17:35:19] 2025-10-12 15:34:39,022 | INFO     | job 6839870098 has state=finished
[2025-10-12 17:35:19] 2025-10-12 15:34:39,022 | INFO     | preparing for final server update for job 6839870098 in state='finished'
[2025-10-12 17:35:19] 2025-10-12 15:34:39,171 | INFO     | monitor loop #193: job 0:6839870098 is in state 'finished'
[2025-10-12 17:35:19] 2025-10-12 15:34:39,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:35:19] 2025-10-12 15:34:39,571 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 17:35:19] 2025-10-12 15:34:39,571 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:35:19] 2025-10-12 15:34:39,571 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:35:19] 2025-10-12 15:34:39,571 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:35:19] 2025-10-12 15:34:39,571 | INFO     | job 6839870098 has finished - writing final server update
[2025-10-12 17:35:19] 2025-10-12 15:34:39,572 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:35:19] 2025-10-12 15:34:39,572 | INFO     | executing command: lscpu
[2025-10-12 17:35:19] 2025-10-12 15:34:39,594 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:35:19] 2025-10-12 15:34:39,883 | INFO     | time since job start (2490s) is within the limit (172800.0s)
[2025-10-12 17:35:19] 2025-10-12 15:34:41,673 | INFO     | monitor loop #194: job 0:6839870098 is in state 'finished'
[2025-10-12 17:35:19] 2025-10-12 15:34:41,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:35:19] 2025-10-12 15:34:41,888 | INFO     | time since job start (2492s) is within the limit (172800.0s)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,013 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:35:19] 2025-10-12 15:34:43,015 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3483.0207916666673
[2025-10-12 17:35:19] 2025-10-12 15:34:43,018 | INFO     | using path: /var/lib/boinc-client/slots/26/PanDA_Pilot-6839870098/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,018 | INFO     | extracted standard info from prmon json
[2025-10-12 17:35:19] 2025-10-12 15:34:43,018 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:35:19] 2025-10-12 15:34:43,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:35:19] 2025-10-12 15:34:43,019 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:35:19] 2025-10-12 15:34:43,019 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:35:19] 2025-10-12 15:34:43,019 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:35:19] 2025-10-12 15:34:43,019 | INFO     | sum of square deviations: 12176972.5
[2025-10-12 17:35:19] 2025-10-12 15:34:43,019 | INFO     | sum of deviations: -3208739263.0
[2025-10-12 17:35:19] 2025-10-12 15:34:43,019 | INFO     | mean x: 1760282120.5
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | mean y: 2869064.0
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | -- intersect: 463852676888.1736
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | intersect: 463852676888.1736
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | chi2: 0.05159948076947556
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | -- intersect: 463852676888.1736
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | current memory leak: -263.51 B/s (using 34 data points, chi2=0.05)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | could have reported an average CPU frequency of 3506 MHz (5 samples)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | ..............................
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . Timing measurements:
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . get job = 0 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . initial setup = 1 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . payload setup = 3 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . stage-in = 0 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . payload execution = 2464 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . stage-out = 0 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | . log creation = 0 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,020 | INFO     | ..............................
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | 
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | job summary report
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | --------------------------------------------------
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | PanDA job id: 6839870098
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | task id: 46676269
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | errors: (none)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | pilot state: finished 
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | transexitcode: 0
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | exeerrorcode: 0
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | exeerrordiag: 
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | exitcode: 0
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | exitmsg: OK
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | cpuconsumptiontime: 26985 s
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | nevents: 400
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | neventsw: 0
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | pid: 1130309
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | pgrp: 1130309
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | corecount: 12
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | event service: False
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | sizes: {0: 2348865, 2: 2349127, 10: 2349155, 2471: 2374384, 2473: 2383398, 2474: 2383454, 2480: 2383808}
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | --------------------------------------------------
[2025-10-12 17:35:19] 2025-10-12 15:34:43,408 | INFO     | 
[2025-10-12 17:35:19] 2025-10-12 15:34:43,409 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/26
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | job 6839870098 has completed (purged errors)
[2025-10-12 17:35:19] 2025-10-12 15:34:43,422 | INFO     | overall cleanup function is called
[2025-10-12 17:35:19] 2025-10-12 15:34:44,428 | INFO     | --- collectZombieJob: --- 10, [1130309]
[2025-10-12 17:35:19] 2025-10-12 15:34:44,428 | INFO     | zombie collector waiting for pid 1130309
[2025-10-12 17:35:19] 2025-10-12 15:34:44,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:35:19] 2025-10-12 15:34:44,428 | INFO     | collected zombie processes
[2025-10-12 17:35:19] 2025-10-12 15:34:44,428 | INFO     | will attempt to kill all subprocesses of pid=1130309
[2025-10-12 17:35:19] 2025-10-12 15:34:44,496 | INFO     | process IDs to be killed: [1130309] (in reverse order)
[2025-10-12 17:35:19] 2025-10-12 15:34:44,529 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:35:19] 2025-10-12 15:34:44,529 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:35:19] 2025-10-12 15:34:44,532 | INFO     | did not find any defunct processes belonging to 1130309
[2025-10-12 17:35:19] 2025-10-12 15:34:44,534 | INFO     | did not find any defunct processes belonging to 1130309
[2025-10-12 17:35:19] 2025-10-12 15:34:44,534 | INFO     | ready for new job
[2025-10-12 17:35:19] 2025-10-12 15:34:44,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:35:19] 2025-10-12 15:34:44,534 | INFO     | ***************************************
[2025-10-12 17:35:19] 2025-10-12 15:34:44,535 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:35:19] 2025-10-12 15:34:44,535 | INFO     | ***************************************
[2025-10-12 17:35:19] 2025-10-12 15:34:44,535 | INFO     | 
[2025-10-12 17:35:19] 2025-10-12 15:34:44,536 | INFO     | architecture information:
[2025-10-12 17:35:19] 2025-10-12 15:34:44,536 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:35:19] 2025-10-12 15:34:44,545 | INFO     | cat /etc/os-release:
[2025-10-12 17:35:19] NAME="CentOS Linux"
[2025-10-12 17:35:19] VERSION="7 (Core)"
[2025-10-12 17:35:19] ID="centos"
[2025-10-12 17:35:19] ID_LIKE="rhel fedora"
[2025-10-12 17:35:19] VERSION_ID="7"
[2025-10-12 17:35:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:35:19] ANSI_COLOR="0;31"
[2025-10-12 17:35:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:35:19] HOME_URL="https://www.centos.org/"
[2025-10-12 17:35:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:35:19] 
[2025-10-12 17:35:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:35:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:35:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:35:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:35:19] 
[2025-10-12 17:35:19] 2025-10-12 15:34:44,545 | INFO     | ***************************************
[2025-10-12 17:35:19] 2025-10-12 15:34:45,047 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/26
[2025-10-12 17:35:19] 2025-10-12 15:34:45,057 | INFO     | sufficient remaining disk space (199113048064 B)
[2025-10-12 17:35:19] 2025-10-12 15:34:45,057 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:35:19] 2025-10-12 15:34:45,057 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:35:19] 2025-10-12 15:34:45,057 | INFO     | update_server=False
[2025-10-12 17:35:19] 2025-10-12 15:34:45,057 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:35:19] 2025-10-12 15:34:45,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:35:19] 2025-10-12 15:34:45,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:35:19] 2025-10-12 15:34:45,180 | INFO     | aborting loop
[2025-10-12 17:35:19] 2025-10-12 15:34:45,220 | INFO     | all payload control threads have been joined
[2025-10-12 17:35:19] 2025-10-12 15:34:45,795 | INFO     | all data control threads have been joined
[2025-10-12 17:35:19] 2025-10-12 15:34:45,834 | INFO     | all job control threads have been joined
[2025-10-12 17:35:19] 2025-10-12 15:34:46,062 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,062 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,155 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,185 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,225 | INFO     | [payload] control thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:35:19] 2025-10-12 15:34:46,533 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,800 | INFO     | [data] control thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:46,839 | INFO     | [job] control thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:47,072 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:47,315 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:47,411 | INFO     | [job] validate thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:47,509 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:47,588 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:47,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:35:19] 2025-10-12 15:34:48,321 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:51,676 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:34:55,715 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:35:19] 2025-10-12 15:34:56,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:35:19] 2025-10-12 15:35:12,873 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:35:19] 2025-10-12 15:35:14,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138457230423872)>', '<ExcThread(monitor, started 138456781031168)>']
[2025-10-12 17:35:19] 2025-10-12 15:35:15,053 | INFO     | PID=1123739 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:35:19] 2025-10-12 15:35:15,053 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:35:19] 2025-10-12 15:35:15,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:35:19] 2025-10-12 15:35:15,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:35:19] 2025-10-12 15:35:15,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:35:19] 2025-10-12 15:35:15,053 | INFO     | [monitor] control thread has ended
[2025-10-12 17:35:19] 2025-10-12 15:35:19,495 | INFO     | all workflow threads have been joined
[2025-10-12 17:35:19] 2025-10-12 15:35:19,495 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:35:19] 2025-10-12 15:35:19,496 | INFO     | traces error code: 0
[2025-10-12 17:35:19] 2025-10-12 15:35:19,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:35:19] 2025-10-12 15:35:19,574 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:35:19] 2025-10-12 15:35:19,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:35:19] 2025-10-12 15:35:19,579 [wrapper] pilotpid: 1123739
[2025-10-12 17:35:19] 2025-10-12 15:35:19,581 [wrapper] Pilot exit status: 0
[2025-10-12 17:35:19] 2025-10-12 15:35:19,587 [wrapper] pandaids: 6839870098
[2025-10-12 17:35:19] 2025-10-12 15:35:19,622 [wrapper] cleanup supervisor_pilot 1138964 1123740
[2025-10-12 17:35:19] 2025-10-12 15:35:19,623 [wrapper] Test setup, not cleaning
[2025-10-12 17:35:19] 2025-10-12 15:35:19,625 [wrapper] apfmon messages muted
[2025-10-12 17:35:19] 2025-10-12 15:35:19,627 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:35:19] 2025-10-12 15:35:19,628 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:35:19]  *** Error codes and diagnostics ***
[2025-10-12 17:35:19]     "exeErrorCode": 0,
[2025-10-12 17:35:19]     "exeErrorDiag": "",
[2025-10-12 17:35:19]     "pilotErrorCode": 0,
[2025-10-12 17:35:19]     "pilotErrorDiag": "",
[2025-10-12 17:35:19]  *** Listing of results directory ***
[2025-10-12 17:35:19] razem 409096
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc    557409 pa&#197;&#186; 12 13:23 pilot3.tar.gz
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc      5112 pa&#197;&#186; 12 13:25 queuedata.json
[2025-10-12 17:35:19] -rwx------ 1 boinc boinc     36292 pa&#197;&#186; 12 13:26 runpilot2-wrapper.sh
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc       100 pa&#197;&#186; 12 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:35:19] -rwxr-xr-x 1 boinc boinc      7986 pa&#197;&#186; 12 16:53 run_atlas
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc       105 pa&#197;&#186; 12 16:53 job.xml
[2025-10-12 17:35:19] -rw-r--r-- 2 boinc boinc 218492684 pa&#197;&#186; 12 16:53 EVNT.46676267._003676.pool.root.1
[2025-10-12 17:35:19] -rw-r--r-- 2 boinc boinc     15120 pa&#197;&#186; 12 16:53 start_atlas.sh
[2025-10-12 17:35:19] drwxrwx--x 2 boinc boinc      4096 pa&#197;&#186; 12 16:53 shared
[2025-10-12 17:35:19] -rw-r--r-- 2 boinc boinc    569681 pa&#197;&#186; 12 16:53 input.tar.gz
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc      9565 pa&#197;&#186; 12 16:53 init_data.xml
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc         0 pa&#197;&#186; 12 16:53 boinc_lockfile
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc      2550 pa&#197;&#186; 12 16:53 pandaJob.out
[2025-10-12 17:35:19] -rw------- 1 boinc boinc    975528 pa&#197;&#186; 12 16:53 agis_schedconf.cvmfs.json
[2025-10-12 17:35:19] -rw------- 1 boinc boinc   1560580 pa&#197;&#186; 12 16:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:35:19] drwx------ 5 boinc boinc      4096 pa&#197;&#186; 12 16:53 pilot3
[2025-10-12 17:35:19] -rw------- 1 boinc boinc 195018505 pa&#197;&#186; 12 17:34 HITS.46676269._077072.pool.root.1
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc       529 pa&#197;&#186; 12 17:34 boinc_task_state.xml
[2025-10-12 17:35:19] -rw------- 1 boinc boinc        95 pa&#197;&#186; 12 17:34 pilot_heartbeat.json
[2025-10-12 17:35:19] -rw------- 1 boinc boinc      1011 pa&#197;&#186; 12 17:34 memory_monitor_summary.json
[2025-10-12 17:35:19] -rw------- 1 boinc boinc    350283 pa&#197;&#186; 12 17:34 log.46676269._077072.job.log.tgz.1
[2025-10-12 17:35:19] -rw------- 1 boinc boinc      7744 pa&#197;&#186; 12 17:34 heartbeat.json
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc        27 pa&#197;&#186; 12 17:34 wrapper_checkpoint.txt
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc      8192 pa&#197;&#186; 12 17:34 boinc_mmap_file
[2025-10-12 17:35:19] -rw------- 1 boinc boinc      4829 pa&#197;&#186; 12 17:35 pilotlog.txt
[2025-10-12 17:35:19] -rw------- 1 boinc boinc    394386 pa&#197;&#186; 12 17:35 log.46676269._077072.job.log.1
[2025-10-12 17:35:19] -rw------- 1 boinc boinc       357 pa&#197;&#186; 12 17:35 output.list
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc       620 pa&#197;&#186; 12 17:35 runtime_log
[2025-10-12 17:35:19] -rw------- 1 boinc boinc    768000 pa&#197;&#186; 12 17:35 result.tar.gz
[2025-10-12 17:35:19] -rw------- 1 boinc boinc       643 pa&#197;&#186; 12 17:35 W42LDm1O9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWdjNDmXRcrTn.diag
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc      8784 pa&#197;&#186; 12 17:35 runtime_log.err
[2025-10-12 17:35:19] -rw-r--r-- 1 boinc boinc     22006 pa&#197;&#186; 12 17:35 stderr.txt
[2025-10-12 17:35:19] HITS file was successfully produced:
[2025-10-12 17:35:19] -rw------- 1 boinc boinc 195018505 pa&#197;&#186; 12 17:34 shared/HITS.pool.root.1
[2025-10-12 17:35:19]  *** Contents of shared directory: ***
[2025-10-12 17:35:19] razem 405156
[2025-10-12 17:35:19] -rw-r--r-- 2 boinc boinc 218492684 pa&#197;&#186; 12 16:53 ATLAS.root_0
[2025-10-12 17:35:19] -rw-r--r-- 2 boinc boinc     15120 pa&#197;&#186; 12 16:53 start_atlas.sh
[2025-10-12 17:35:19] -rw-r--r-- 2 boinc boinc    569681 pa&#197;&#186; 12 16:53 input.tar.gz
[2025-10-12 17:35:19] -rw------- 1 boinc boinc 195018505 pa&#197;&#186; 12 17:34 HITS.pool.root.1
[2025-10-12 17:35:19] -rw------- 1 boinc boinc    768000 pa&#197;&#186; 12 17:35 result.tar.gz
17:35:20 (1119932): run_atlas exited; CPU time 26992.806221
17:35:20 (1119932): called boinc_finish(0)

</stderr_txt>
]]>

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