Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:46:05 (746434): wrapper (7.7.26015): starting
22:46:05 (746434): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:46:05] Arguments: --nthreads 12
[2025-10-12 22:46:05] Threads: 12
[2025-10-12 22:46:05] Checking for CVMFS
[2025-10-12 22:46:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:46:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:46:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:46:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:46:06] 2.13.2.0 572020 419 62220 151636 1 57 2646413 4097025 0 130560 0 494798 99.991 21142 7534 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 22:46:06] CVMFS is ok
[2025-10-12 22:46:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:46:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:46:06] Further information can be found at the LHC@home message board.
[2025-10-12 22:46:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:46:06] Checking for apptainer binary...
[2025-10-12 22:46:06] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 22:46:06] apptainer is not installed, using version from CVMFS
[2025-10-12 22:46:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:46:06] pckelar8.cern.ch
[2025-10-12 22:46:06] apptainer works
[2025-10-12 22:46:06] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:46:06] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:46:06] Starting ATLAS job with PandaID=6839869904
[2025-10-12 22:46:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:56:25]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:56:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/4a/log.46676269._076878.job.log.tgz.1
[2025-10-12 23:56:25]  workdir=None
[2025-10-12 23:56:25] ]
[2025-10-12 23:56:25] 2025-10-12 21:55:19,672 | INFO     | transferring file log.46676269._076878.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6839869904/log.46676269._076878.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 23:56:25] 2025-10-12 21:55:19,672 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6839869904/log.46676269._076878.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._076878.job
[2025-10-12 23:56:25] 2025-10-12 21:55:19,686 | INFO     | adding to output.list: log.46676269._076878.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/4a/log.46676269._076878.job.log.tg
[2025-10-12 23:56:25] 2025-10-12 21:55:19,687 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:56:25] 2025-10-12 21:55:19,687 | INFO     | summary of transferred files:
[2025-10-12 23:56:25] 2025-10-12 21:55:19,687 | INFO     |  -- lfn=log.46676269._076878.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:56:25] 2025-10-12 21:55:19,687 | INFO     | stage-out finished correctly
[2025-10-12 23:56:25] 2025-10-12 21:55:20,372 | WARNING  | process 757496 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:56:25] 2025-10-12 21:55:20,372 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839869904/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:56:25] 2025-10-12 21:55:20,441 | INFO     | number of running child processes to parent process 757496: 1
[2025-10-12 23:56:25] 2025-10-12 21:55:20,441 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:56:25] 2025-10-12 21:55:20,663 | INFO     | time since job start (4147s) is within the limit (172800.0s)
[2025-10-12 23:56:25] 2025-10-12 21:55:22,536 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:56:25] 2025-10-12 21:55:22,669 | INFO     | time since job start (4149s) is within the limit (172800.0s)
[2025-10-12 23:56:25] 2025-10-12 21:55:22,944 | INFO     | monitor loop #315: job 0:6839869904 is in state 'finished'
[2025-10-12 23:56:25] 2025-10-12 21:55:22,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:56:25] 2025-10-12 21:55:24,674 | INFO     | time since job start (4151s) is within the limit (172800.0s)
[2025-10-12 23:56:25] 2025-10-12 21:55:25,314 | INFO     | job 6839869904 has state=finished
[2025-10-12 23:56:25] 2025-10-12 21:55:25,314 | INFO     | preparing for final server update for job 6839869904 in state='finished'
[2025-10-12 23:56:25] 2025-10-12 21:55:25,447 | INFO     | monitor loop #316: job 0:6839869904 is in state 'finished'
[2025-10-12 23:56:25] 2025-10-12 21:55:25,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:56:25] 2025-10-12 21:55:25,842 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 23:56:25] 2025-10-12 21:55:25,842 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:56:25] 2025-10-12 21:55:25,842 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:56:25] 2025-10-12 21:55:25,842 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:56:25] 2025-10-12 21:55:25,842 | INFO     | job 6839869904 has finished - writing final server update
[2025-10-12 23:56:25] 2025-10-12 21:55:25,842 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:56:25] 2025-10-12 21:55:25,844 | INFO     | executing command: lscpu
[2025-10-12 23:56:25] 2025-10-12 21:55:25,865 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:56:25] 2025-10-12 21:55:26,680 | INFO     | time since job start (4153s) is within the limit (172800.0s)
[2025-10-12 23:56:25] 2025-10-12 21:55:27,950 | INFO     | monitor loop #317: job 0:6839869904 is in state 'finished'
[2025-10-12 23:56:25] 2025-10-12 21:55:27,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:56:25] 2025-10-12 21:55:28,685 | INFO     | time since job start (4155s) is within the limit (172800.0s)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,431 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 23:56:25] 2025-10-12 21:55:30,433 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2109.9685833333333
[2025-10-12 23:56:25] 2025-10-12 21:55:30,434 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839869904/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,435 | INFO     | extracted standard info from prmon json
[2025-10-12 23:56:25] 2025-10-12 21:55:30,435 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:56:25] 2025-10-12 21:55:30,435 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:56:25] 2025-10-12 21:55:30,435 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:56:25] 2025-10-12 21:55:30,435 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:56:25] 2025-10-12 21:55:30,437 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:56:25] 2025-10-12 21:55:30,437 | INFO     | sum of square deviations: 70364110.0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,437 | INFO     | sum of deviations: -9689967242.000002
[2025-10-12 23:56:25] 2025-10-12 21:55:30,437 | INFO     | mean x: 1760304133.0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,437 | INFO     | mean y: 2907358.7868852457
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | -- intersect: 242417533007.10696
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | intersect: 242417533007.10696
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | chi2: 0.08180007427755055
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | -- intersect: 242417533007.10696
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | current memory leak: -137.71 B/s (using 61 data points, chi2=0.08)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | could have reported an average CPU frequency of 2539 MHz (6 samples)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,438 | INFO     | ..............................
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . Timing measurements:
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . get job = 0 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . initial setup = 1 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . payload setup = 6 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . stage-in = 0 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . payload execution = 4121 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . stage-out = 0 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | . log creation = 0 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,439 | INFO     | ..............................
[2025-10-12 23:56:25] 2025-10-12 21:55:30,507 | INFO     | 
[2025-10-12 23:56:25] 2025-10-12 21:55:30,507 | INFO     | job summary report
[2025-10-12 23:56:25] 2025-10-12 21:55:30,507 | INFO     | --------------------------------------------------
[2025-10-12 23:56:25] 2025-10-12 21:55:30,507 | INFO     | PanDA job id: 6839869904
[2025-10-12 23:56:25] 2025-10-12 21:55:30,507 | INFO     | task id: 46676269
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | errors: (none)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | pilot state: finished 
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | transexitcode: 0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | exeerrorcode: 0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | exeerrordiag: 
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | exitcode: 0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | exitmsg: OK
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | cpuconsumptiontime: 43937 s
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | nevents: 400
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | neventsw: 0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,508 | INFO     | pid: 757496
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | pgrp: 757496
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | corecount: 12
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | event service: False
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | sizes: {0: 2348029, 1: 2348885, 4: 2349147, 12: 2349175, 4130: 2375178, 4131: 2384359, 4134: 2384359, 4142: 2384553}
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | --------------------------------------------------
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | 
[2025-10-12 23:56:25] 2025-10-12 21:55:30,509 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 23:56:25] 2025-10-12 21:55:30,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:56:25] 2025-10-12 21:55:30,530 | INFO     | job 6839869904 has completed (purged errors)
[2025-10-12 23:56:25] 2025-10-12 21:55:30,530 | INFO     | overall cleanup function is called
[2025-10-12 23:56:25] 2025-10-12 21:55:31,538 | INFO     | --- collectZombieJob: --- 10, [757496]
[2025-10-12 23:56:25] 2025-10-12 21:55:31,538 | INFO     | zombie collector waiting for pid 757496
[2025-10-12 23:56:25] 2025-10-12 21:55:31,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:56:25] 2025-10-12 21:55:31,538 | INFO     | collected zombie processes
[2025-10-12 23:56:25] 2025-10-12 21:55:31,538 | INFO     | will attempt to kill all subprocesses of pid=757496
[2025-10-12 23:56:25] 2025-10-12 21:55:31,613 | INFO     | process IDs to be killed: [757496] (in reverse order)
[2025-10-12 23:56:25] 2025-10-12 21:55:31,647 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:56:25] 2025-10-12 21:55:31,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:56:25] 2025-10-12 21:55:31,649 | INFO     | did not find any defunct processes belonging to 757496
[2025-10-12 23:56:25] 2025-10-12 21:55:31,651 | INFO     | did not find any defunct processes belonging to 757496
[2025-10-12 23:56:25] 2025-10-12 21:55:31,651 | INFO     | ready for new job
[2025-10-12 23:56:25] 2025-10-12 21:55:31,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:56:25] 2025-10-12 21:55:31,652 | INFO     | ***************************************
[2025-10-12 23:56:25] 2025-10-12 21:55:31,652 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:56:25] 2025-10-12 21:55:31,652 | INFO     | ***************************************
[2025-10-12 23:56:25] 2025-10-12 21:55:31,653 | INFO     | 
[2025-10-12 23:56:25] 2025-10-12 21:55:31,653 | INFO     | architecture information:
[2025-10-12 23:56:25] 2025-10-12 21:55:31,653 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:56:25] 2025-10-12 21:55:31,662 | INFO     | cat /etc/os-release:
[2025-10-12 23:56:25] NAME="CentOS Linux"
[2025-10-12 23:56:25] VERSION="7 (Core)"
[2025-10-12 23:56:25] ID="centos"
[2025-10-12 23:56:25] ID_LIKE="rhel fedora"
[2025-10-12 23:56:25] VERSION_ID="7"
[2025-10-12 23:56:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:56:25] ANSI_COLOR="0;31"
[2025-10-12 23:56:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:56:25] HOME_URL="https://www.centos.org/"
[2025-10-12 23:56:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:56:25] 
[2025-10-12 23:56:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:56:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:56:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:56:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:56:25] 
[2025-10-12 23:56:25] 2025-10-12 21:55:31,662 | INFO     | ***************************************
[2025-10-12 23:56:25] 2025-10-12 21:55:32,165 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 23:56:25] 2025-10-12 21:55:32,175 | INFO     | sufficient remaining disk space (1716521009152 B)
[2025-10-12 23:56:25] 2025-10-12 21:55:32,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:56:25] 2025-10-12 21:55:32,176 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:56:25] 2025-10-12 21:55:32,176 | INFO     | update_server=False
[2025-10-12 23:56:25] 2025-10-12 21:55:32,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:56:25] 2025-10-12 21:55:32,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:56:25] 2025-10-12 21:55:32,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:56:25] 2025-10-12 21:55:32,177 | INFO     | aborting loop
[2025-10-12 23:56:25] 2025-10-12 21:55:32,206 | INFO     | all payload control threads have been joined
[2025-10-12 23:56:25] 2025-10-12 21:55:32,377 | INFO     | all data control threads have been joined
[2025-10-12 23:56:25] 2025-10-12 21:55:32,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:56:25] 2025-10-12 21:55:33,062 | INFO     | all job control threads have been joined
[2025-10-12 23:56:25] 2025-10-12 21:55:33,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:56:25] 2025-10-12 21:55:33,181 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:33,182 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:33,182 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:33,211 | INFO     | [payload] control thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:33,383 | INFO     | [data] control thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:33,493 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:33,980 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,068 | INFO     | [job] control thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,197 | INFO     | [job] validate thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,391 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,514 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,514 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,543 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:34,780 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:37,115 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:55:42,982 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:56:25] 2025-10-12 21:55:43,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:56:25] 2025-10-12 21:56:01,865 | INFO     | PID=750203 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 23:56:25] 2025-10-12 21:56:01,866 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:56:25] 2025-10-12 21:56:01,866 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:56:25] 2025-10-12 21:56:01,866 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:56:25] 2025-10-12 21:56:19,845 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:56:25] 2025-10-12 21:56:20,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955458025280)>', '<ExcThread(monitor, started 139954260801280)>']
[2025-10-12 23:56:25] 2025-10-12 21:56:20,963 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:56:25] 2025-10-12 21:56:20,963 | INFO     | [monitor] control thread has ended
[2025-10-12 23:56:25] 2025-10-12 21:56:25,326 | INFO     | all workflow threads have been joined
[2025-10-12 23:56:25] 2025-10-12 21:56:25,327 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:56:25] 2025-10-12 21:56:25,327 | INFO     | traces error code: 0
[2025-10-12 23:56:25] 2025-10-12 21:56:25,327 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:56:25] 2025-10-12 21:56:25,411 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:56:25] 2025-10-12 21:56:25,414 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:56:25] 2025-10-12 21:56:25,417 [wrapper] pilotpid: 750203
[2025-10-12 23:56:25] 2025-10-12 21:56:25,419 [wrapper] Pilot exit status: 0
[2025-10-12 23:56:25] 2025-10-12 21:56:25,427 [wrapper] pandaids: 6839869904
[2025-10-12 23:56:25] 2025-10-12 21:56:25,450 [wrapper] cleanup supervisor_pilot  769883 750204
[2025-10-12 23:56:25] 2025-10-12 21:56:25,452 [wrapper] Test setup, not cleaning
[2025-10-12 23:56:25] 2025-10-12 21:56:25,454 [wrapper] apfmon messages muted
[2025-10-12 23:56:25] 2025-10-12 21:56:25,456 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:56:25] 2025-10-12 21:56:25,458 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:56:25]  *** Error codes and diagnostics ***
[2025-10-12 23:56:25]     "exeErrorCode": 0,
[2025-10-12 23:56:25]     "exeErrorDiag": "",
[2025-10-12 23:56:25]     "pilotErrorCode": 0,
[2025-10-12 23:56:25]     "pilotErrorDiag": "",
[2025-10-12 23:56:25]  *** Listing of results directory ***
[2025-10-12 23:56:25] total 409648
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:57 pilot3.tar.gz
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:11 queuedata.json
[2025-10-12 23:56:25] -rwx------ 1 boinc boinc     36292 Oct 12 13:12 runpilot2-wrapper.sh
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:56:25] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:46 run_atlas
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:46 job.xml
[2025-10-12 23:56:25] -rw-r--r-- 2 boinc boinc 223169534 Oct 12 22:46 EVNT.46676267._003667.pool.root.1
[2025-10-12 23:56:25] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:46 start_atlas.sh
[2025-10-12 23:56:25] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:46 shared
[2025-10-12 23:56:25] -rw-r--r-- 2 boinc boinc    569684 Oct 12 22:46 input.tar.gz
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc      6251 Oct 12 22:46 init_data.xml
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:46 boinc_lockfile
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:46 pandaJob.out
[2025-10-12 23:56:25] -rw------- 1 boinc boinc    975536 Oct 12 22:46 agis_schedconf.cvmfs.json
[2025-10-12 23:56:25] -rw------- 1 boinc boinc   1560580 Oct 12 22:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:56:25] drwx------ 5 boinc boinc      4096 Oct 12 22:46 pilot3
[2025-10-12 23:56:25] -rw------- 1 boinc boinc 190413798 Oct 12 23:54 HITS.46676269._076878.pool.root.1
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:54 boinc_task_state.xml
[2025-10-12 23:56:25] -rw------- 1 boinc boinc      1021 Oct 12 23:55 memory_monitor_summary.json
[2025-10-12 23:56:25] -rw------- 1 boinc boinc    380588 Oct 12 23:55 log.46676269._076878.job.log.tgz.1
[2025-10-12 23:56:25] -rw------- 1 boinc boinc      7796 Oct 12 23:55 heartbeat.json
[2025-10-12 23:56:25] -rw------- 1 boinc boinc        95 Oct 12 23:56 pilot_heartbeat.json
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:56 wrapper_checkpoint.txt
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:56 boinc_mmap_file
[2025-10-12 23:56:25] -rw------- 1 boinc boinc      4821 Oct 12 23:56 pilotlog.txt
[2025-10-12 23:56:25] -rw------- 1 boinc boinc    614746 Oct 12 23:56 log.46676269._076878.job.log.1
[2025-10-12 23:56:25] -rw------- 1 boinc boinc       357 Oct 12 23:56 output.list
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:56 runtime_log
[2025-10-12 23:56:25] -rw------- 1 boinc boinc   1013760 Oct 12 23:56 result.tar.gz
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc      8727 Oct 12 23:56 runtime_log.err
[2025-10-12 23:56:25] -rw------- 1 boinc boinc       656 Oct 12 23:56 BkIODm8A9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmObjNDmHCWqLn.diag
[2025-10-12 23:56:25] -rw-r--r-- 1 boinc boinc     22403 Oct 12 23:56 stderr.txt
[2025-10-12 23:56:25] HITS file was successfully produced:
[2025-10-12 23:56:25] -rw------- 1 boinc boinc 190413798 Oct 12 23:54 shared/HITS.pool.root.1
[2025-10-12 23:56:25]  *** Contents of shared directory: ***
[2025-10-12 23:56:25] total 405468
[2025-10-12 23:56:25] -rw-r--r-- 2 boinc boinc 223169534 Oct 12 22:46 ATLAS.root_0
[2025-10-12 23:56:25] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:46 start_atlas.sh
[2025-10-12 23:56:25] -rw-r--r-- 2 boinc boinc    569684 Oct 12 22:46 input.tar.gz
[2025-10-12 23:56:25] -rw------- 1 boinc boinc 190413798 Oct 12 23:54 HITS.pool.root.1
[2025-10-12 23:56:25] -rw------- 1 boinc boinc   1013760 Oct 12 23:56 result.tar.gz
23:56:27 (746434): run_atlas exited; CPU time 43947.448624
23:56:27 (746434): called boinc_finish(0)

</stderr_txt>
]]>

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