Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:47:07 (32725): wrapper (7.7.26015): starting
10:47:07 (32725): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:47:07] Arguments: --nthreads 8
[2025-10-12 10:47:07] Threads: 8
[2025-10-12 10:47:07] Checking for CVMFS
[2025-10-12 10:47:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:47:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:47:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:47:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:47:07] 2.11.2.0 4697 53003 117688 151623 3 59 13482897 18432001 1833 130560 0 48742978 99.975 2400614 39663 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:47:07] CVMFS is ok
[2025-10-12 10:47:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:47:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:47:07] Further information can be found at the LHC@home message board.
[2025-10-12 10:47:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:47:07] Checking for apptainer binary...
[2025-10-12 10:47:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:47:07] Running /usr/bin/apptainer --version
[2025-10-12 10:47:07] apptainer version 1.3.2-1.el7
[2025-10-12 10:47:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:47:08] c-206-21.aglt2.org
[2025-10-12 10:47:08] apptainer works
[2025-10-12 10:47:08] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:47:08] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:47:08] Starting ATLAS job with PandaID=6839386333
[2025-10-12 10:47:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:45:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:45:42] 2025-10-12 17:45:01,721 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:45:42] 2025-10-12 17:45:01,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:45:42] 2025-10-12 17:45:01,722 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:45:42] 2025-10-12 17:45:01,727 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:45:42] 2025-10-12 17:45:01,728 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,729 | INFO     | sum of deviations: -5787502002.000005
[2025-10-12 13:45:42] 2025-10-12 17:45:01,729 | INFO     | mean x: 1760285772.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,730 | INFO     | mean y: 2475902.754285714
[2025-10-12 13:45:42] 2025-10-12 17:45:01,730 | INFO     | -- intersect: 6132976572.05448
[2025-10-12 13:45:42] 2025-10-12 17:45:01,730 | INFO     | intersect: 6132976572.05448
[2025-10-12 13:45:42] 2025-10-12 17:45:01,730 | INFO     | chi2: 2.269547020999682
[2025-10-12 13:45:42] 2025-10-12 17:45:01,731 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 13:45:42] 2025-10-12 17:45:01,732 | INFO     | sum of deviations: 5658240439.999996
[2025-10-12 13:45:42] 2025-10-12 17:45:01,732 | INFO     | mean x: 1760285619.5
[2025-10-12 13:45:42] 2025-10-12 17:45:01,733 | INFO     | mean y: 2488219.717647059
[2025-10-12 13:45:42] 2025-10-12 17:45:01,733 | INFO     | -- intersect: -6535654237.387952
[2025-10-12 13:45:42] 2025-10-12 17:45:01,733 | INFO     | intersect: -6535654237.387952
[2025-10-12 13:45:42] 2025-10-12 17:45:01,733 | INFO     | chi2: 1.501924593570662
[2025-10-12 13:45:42] 2025-10-12 17:45:01,734 | INFO     | current chi2=1.501924593570662 (change=33.822715296328184 %)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,734 | INFO     | sum of square deviations: 1392881930.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,735 | INFO     | sum of deviations: 5375639212.999994
[2025-10-12 13:45:42] 2025-10-12 17:45:01,736 | INFO     | mean x: 1760285467.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,736 | INFO     | mean y: 2487889.4
[2025-10-12 13:45:42] 2025-10-12 17:45:01,736 | INFO     | -- intersect: -6791095528.312374
[2025-10-12 13:45:42] 2025-10-12 17:45:01,736 | INFO     | intersect: -6791095528.312374
[2025-10-12 13:45:42] 2025-10-12 17:45:01,736 | INFO     | chi2: 1.5024283755759047
[2025-10-12 13:45:42] 2025-10-12 17:45:01,737 | INFO     | current chi2=1.5024283755759047 (change=-0.03354242998611645 %)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,737 | INFO     | right removable region: 164
[2025-10-12 13:45:42] 2025-10-12 17:45:01,737 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 13:45:42] 2025-10-12 17:45:01,739 | INFO     | sum of deviations: -30009097925.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,739 | INFO     | mean x: 1760285924.5
[2025-10-12 13:45:42] 2025-10-12 17:45:01,739 | INFO     | mean y: 2502216.0823529414
[2025-10-12 13:45:42] 2025-10-12 17:45:01,739 | INFO     | -- intersect: 34678262873.32733
[2025-10-12 13:45:42] 2025-10-12 17:45:01,739 | INFO     | intersect: 34678262873.32733
[2025-10-12 13:45:42] 2025-10-12 17:45:01,740 | INFO     | chi2: 0.9382219583573232
[2025-10-12 13:45:42] 2025-10-12 17:45:01,740 | INFO     | current chi2=0.9382219583573232 (change=58.66038686680047 %)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,740 | INFO     | sum of square deviations: 1392881930.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,742 | INFO     | sum of deviations: -28075213888.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,742 | INFO     | mean x: 1760286077.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,742 | INFO     | mean y: 2499892.9454545453
[2025-10-12 13:45:42] 2025-10-12 17:45:01,742 | INFO     | -- intersect: 35483187129.54665
[2025-10-12 13:45:42] 2025-10-12 17:45:01,743 | INFO     | intersect: 35483187129.54665
[2025-10-12 13:45:42] 2025-10-12 17:45:01,743 | INFO     | chi2: 0.923995559012385
[2025-10-12 13:45:42] 2025-10-12 17:45:01,743 | INFO     | current chi2=0.923995559012385 (change=1.516314899498457 %)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,743 | INFO     | left removable region: 20
[2025-10-12 13:45:42] 2025-10-12 17:45:01,744 | INFO     | sum of square deviations: 925859220.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,745 | INFO     | sum of deviations: -5651097523.0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,745 | INFO     | mean x: 1760286046.5
[2025-10-12 13:45:42] 2025-10-12 17:45:01,745 | INFO     | mean y: 2498611.652777778
[2025-10-12 13:45:42] 2025-10-12 17:45:01,746 | INFO     | -- intersect: 10746624610.79508
[2025-10-12 13:45:42] 2025-10-12 17:45:01,746 | INFO     | intersect: 10746624610.79508
[2025-10-12 13:45:42] 2025-10-12 17:45:01,746 | INFO     | chi2: 0.07596264496242083
[2025-10-12 13:45:42] 2025-10-12 17:45:01,746 | INFO     | -- intersect: 10746624610.79508
[2025-10-12 13:45:42] 2025-10-12 17:45:01,746 | INFO     | current memory leak: -6.10 B/s (using 144 data points, chi2=0.08)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,747 | INFO     | could have reported an average CPU frequency of 2569 MHz (9 samples)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,747 | INFO     | ..............................
[2025-10-12 13:45:42] 2025-10-12 17:45:01,747 | INFO     | . Timing measurements:
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . get job = 0 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . initial setup = 2 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . payload setup = 5 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . stage-in = 0 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . payload execution = 10630 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . stage-out = 1 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,748 | INFO     | . log creation = 0 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,749 | INFO     | ..............................
[2025-10-12 13:45:42] 2025-10-12 17:45:01,995 | INFO     | 
[2025-10-12 13:45:42] 2025-10-12 17:45:01,995 | INFO     | job summary report
[2025-10-12 13:45:42] 2025-10-12 17:45:01,996 | INFO     | --------------------------------------------------
[2025-10-12 13:45:42] 2025-10-12 17:45:01,996 | INFO     | PanDA job id: 6839386333
[2025-10-12 13:45:42] 2025-10-12 17:45:01,996 | INFO     | task id: 46676269
[2025-10-12 13:45:42] 2025-10-12 17:45:01,996 | INFO     | errors: (none)
[2025-10-12 13:45:42] 2025-10-12 17:45:01,996 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:45:42] 2025-10-12 17:45:01,996 | INFO     | pilot state: finished 
[2025-10-12 13:45:42] 2025-10-12 17:45:01,997 | INFO     | transexitcode: 0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,997 | INFO     | exeerrorcode: 0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,997 | INFO     | exeerrordiag: 
[2025-10-12 13:45:42] 2025-10-12 17:45:01,997 | INFO     | exitcode: 0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,997 | INFO     | exitmsg: OK
[2025-10-12 13:45:42] 2025-10-12 17:45:01,997 | INFO     | cpuconsumptiontime: 80101 s
[2025-10-12 13:45:42] 2025-10-12 17:45:01,998 | INFO     | nevents: 400
[2025-10-12 13:45:42] 2025-10-12 17:45:01,998 | INFO     | neventsw: 0
[2025-10-12 13:45:42] 2025-10-12 17:45:01,998 | INFO     | pid: 10538
[2025-10-12 13:45:42] 2025-10-12 17:45:01,998 | INFO     | pgrp: 10538
[2025-10-12 13:45:42] 2025-10-12 17:45:01,998 | INFO     | corecount: 8
[2025-10-12 13:45:42] 2025-10-12 17:45:01,998 | INFO     | event service: False
[2025-10-12 13:45:42] 2025-10-12 17:45:01,999 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 10639: 2378005, 10640: 2387003, 10643: 2387187, 10647: 2387445}
[2025-10-12 13:45:42] 2025-10-12 17:45:01,999 | INFO     | --------------------------------------------------
[2025-10-12 13:45:42] 2025-10-12 17:45:01,999 | INFO     | 
[2025-10-12 13:45:42] 2025-10-12 17:45:01,999 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 13:45:42] 2025-10-12 17:45:02,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,018 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,018 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:45:42] 2025-10-12 17:45:02,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:45:42] 2025-10-12 17:45:02,022 | INFO     | job 6839386333 has completed (purged errors)
[2025-10-12 13:45:42] 2025-10-12 17:45:02,022 | INFO     | overall cleanup function is called
[2025-10-12 13:45:42] 2025-10-12 17:45:03,030 | INFO     | --- collectZombieJob: --- 10, [10538]
[2025-10-12 13:45:42] 2025-10-12 17:45:03,040 | INFO     | zombie collector waiting for pid 10538
[2025-10-12 13:45:42] 2025-10-12 17:45:03,040 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:45:42] 2025-10-12 17:45:03,040 | INFO     | collected zombie processes
[2025-10-12 13:45:42] 2025-10-12 17:45:03,040 | INFO     | will attempt to kill all subprocesses of pid=10538
[2025-10-12 13:45:42] 2025-10-12 17:45:03,223 | INFO     | process IDs to be killed: [10538] (in reverse order)
[2025-10-12 13:45:42] 2025-10-12 17:45:03,276 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:45:42] 2025-10-12 17:45:03,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:45:42] 2025-10-12 17:45:03,279 | INFO     | did not find any defunct processes belonging to 10538
[2025-10-12 13:45:42] 2025-10-12 17:45:03,281 | INFO     | did not find any defunct processes belonging to 10538
[2025-10-12 13:45:42] 2025-10-12 17:45:03,281 | INFO     | ready for new job
[2025-10-12 13:45:42] 2025-10-12 17:45:03,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:45:42] 2025-10-12 17:45:03,283 | INFO     | ***************************************
[2025-10-12 13:45:42] 2025-10-12 17:45:03,283 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:45:42] 2025-10-12 17:45:03,283 | INFO     | ***************************************
[2025-10-12 13:45:42] 2025-10-12 17:45:03,283 | INFO     | 
[2025-10-12 13:45:42] 2025-10-12 17:45:03,284 | INFO     | architecture information:
[2025-10-12 13:45:42] 2025-10-12 17:45:03,284 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:45:42] 2025-10-12 17:45:03,293 | INFO     | cat /etc/os-release:
[2025-10-12 13:45:42] NAME="CentOS Linux"
[2025-10-12 13:45:42] VERSION="7 (Core)"
[2025-10-12 13:45:42] ID="centos"
[2025-10-12 13:45:42] ID_LIKE="rhel fedora"
[2025-10-12 13:45:42] VERSION_ID="7"
[2025-10-12 13:45:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:45:42] ANSI_COLOR="0;31"
[2025-10-12 13:45:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:45:42] HOME_URL="https://www.centos.org/"
[2025-10-12 13:45:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:45:42] 
[2025-10-12 13:45:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:45:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:45:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:45:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:45:42] 
[2025-10-12 13:45:42] 2025-10-12 17:45:03,294 | INFO     | ***************************************
[2025-10-12 13:45:42] 2025-10-12 17:45:03,797 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 13:45:42] 2025-10-12 17:45:03,815 | INFO     | sufficient remaining disk space (28109176832 B)
[2025-10-12 13:45:42] 2025-10-12 17:45:03,815 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:45:42] 2025-10-12 17:45:03,815 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:45:42] 2025-10-12 17:45:03,815 | INFO     | update_server=False
[2025-10-12 13:45:42] 2025-10-12 17:45:03,815 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:45:42] 2025-10-12 17:45:03,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:45:42] 2025-10-12 17:45:03,816 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:45:42] 2025-10-12 17:45:04,148 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:45:42] 2025-10-12 17:45:04,241 | INFO     | all data control threads have been joined
[2025-10-12 13:45:42] 2025-10-12 17:45:04,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:45:42] 2025-10-12 17:45:04,652 | INFO     | aborting loop
[2025-10-12 13:45:42] 2025-10-12 17:45:04,674 | INFO     | all payload control threads have been joined
[2025-10-12 13:45:42] 2025-10-12 17:45:04,818 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:04,821 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:04,905 | INFO     | [job] validate thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,246 | INFO     | [data] control thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,342 | INFO     | all job control threads have been joined
[2025-10-12 13:45:42] 2025-10-12 17:45:05,370 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,396 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,612 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,627 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,648 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,657 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,680 | INFO     | [payload] control thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,747 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:05,821 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:06,210 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:06,348 | INFO     | [job] control thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:08,153 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:45:42] 2025-10-12 17:45:33,424 | INFO     | PID=4079 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 13:45:42] 2025-10-12 17:45:33,425 | INFO     | .. there are 3 such processes running
[2025-10-12 13:45:42] 2025-10-12 17:45:33,425 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:45:42] 2025-10-12 17:45:33,426 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:45:42] 2025-10-12 17:45:33,426 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:45:42] 2025-10-12 17:45:36,577 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:45:42] 2025-10-12 17:45:37,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529318381376)>', '<ExcThread(monitor, started 140528880432896)>']
[2025-10-12 13:45:42] 2025-10-12 17:45:37,446 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:45:42] 2025-10-12 17:45:37,446 | INFO     | [monitor] control thread has ended
[2025-10-12 13:45:42] 2025-10-12 17:45:42,305 | INFO     | all workflow threads have been joined
[2025-10-12 13:45:42] 2025-10-12 17:45:42,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:45:42] 2025-10-12 17:45:42,306 | INFO     | traces error code: 0
[2025-10-12 13:45:42] 2025-10-12 17:45:42,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:45:42] 2025-10-12 17:45:42,426 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:45:42] 2025-10-12 17:45:42,429 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:45:42] 2025-10-12 17:45:42,431 [wrapper] pilotpid: 4079
[2025-10-12 13:45:42] 2025-10-12 17:45:42,434 [wrapper] Pilot exit status: 0
[2025-10-12 13:45:42] 2025-10-12 17:45:42,447 [wrapper] pandaids: 6839386333
[2025-10-12 13:45:42] 2025-10-12 17:45:42,487 [wrapper] cleanup supervisor_pilot  6785 4081
[2025-10-12 13:45:42] 2025-10-12 17:45:42,490 [wrapper] Test setup, not cleaning
[2025-10-12 13:45:42] 2025-10-12 17:45:42,492 [wrapper] apfmon messages muted
[2025-10-12 13:45:42] 2025-10-12 17:45:42,495 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:45:42] 2025-10-12 17:45:42,500 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:45:42]  *** Error codes and diagnostics ***
[2025-10-12 13:45:42]     "exeErrorCode": 0,
[2025-10-12 13:45:42]     "exeErrorDiag": "",
[2025-10-12 13:45:42]     "pilotErrorCode": 0,
[2025-10-12 13:45:42]     "pilotErrorDiag": "",
[2025-10-12 13:45:42]  *** Listing of results directory ***
[2025-10-12 13:45:42] total 411648
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:04 pilot3.tar.gz
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:06 queuedata.json
[2025-10-12 13:45:42] -rwx------ 1 boincer umatlas     36292 Oct 12 00:06 runpilot2-wrapper.sh
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:45:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:47 run_atlas
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:47 job.xml
[2025-10-12 13:45:42] -rw-r--r-- 2 boincer umatlas 221720531 Oct 12 10:47 EVNT.46676267._003249.pool.root.1
[2025-10-12 13:45:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:47 start_atlas.sh
[2025-10-12 13:45:42] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:47 shared
[2025-10-12 13:45:42] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 10:47 input.tar.gz
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:47 boinc_lockfile
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:47 pandaJob.out
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas    975528 Oct 12 10:47 agis_schedconf.cvmfs.json
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas   1560580 Oct 12 10:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:45:42] drwx------ 5 boincer umatlas      4096 Oct 12 10:47 pilot3
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 13:37 init_data.xml
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas 192113833 Oct 12 13:44 HITS.46676269._070685.pool.root.1
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas       530 Oct 12 13:44 boinc_task_state.xml
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas      1055 Oct 12 13:44 memory_monitor_summary.json
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas    409081 Oct 12 13:44 log.46676269._070685.job.log.tgz.1
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas      7857 Oct 12 13:45 heartbeat.json
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:45 boinc_mmap_file
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas        28 Oct 12 13:45 wrapper_checkpoint.txt
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas        95 Oct 12 13:45 pilot_heartbeat.json
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas      4820 Oct 12 13:45 pilotlog.txt
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas   1490774 Oct 12 13:45 log.46676269._070685.job.log.1
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas       357 Oct 12 13:45 output.list
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:45 runtime_log
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas   1914880 Oct 12 13:45 result.tar.gz
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 13:45 runtime_log.err
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas       662 Oct 12 13:45 IV7NDmOX2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaXiNDmeh7fkm.diag
[2025-10-12 13:45:42] -rw-r--r-- 1 boincer umatlas     20846 Oct 12 13:45 stderr.txt
[2025-10-12 13:45:42] HITS file was successfully produced:
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas 192113833 Oct 12 13:44 shared/HITS.pool.root.1
[2025-10-12 13:45:42]  *** Contents of shared directory: ***
[2025-10-12 13:45:42] total 406588
[2025-10-12 13:45:42] -rw-r--r-- 2 boincer umatlas 221720531 Oct 12 10:47 ATLAS.root_0
[2025-10-12 13:45:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:47 start_atlas.sh
[2025-10-12 13:45:42] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 10:47 input.tar.gz
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas 192113833 Oct 12 13:44 HITS.pool.root.1
[2025-10-12 13:45:42] -rw------- 1 boincer umatlas   1914880 Oct 12 13:45 result.tar.gz
13:45:44 (32725): run_atlas exited; CPU time 80225.745356
13:45:44 (32725): called boinc_finish(0)

</stderr_txt>
]]>

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