Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:17:47 (659147): wrapper (7.7.26015): starting
19:17:47 (659147): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 19:17:47] Arguments: --nthreads 12
[2025-10-12 19:17:47] Threads: 12
[2025-10-12 19:17:47] Checking for CVMFS
[2025-10-12 19:17:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 19:17:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 19:17:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 19:17:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 19:17:47] 2.13.2.0 572020 211 56716 151629 1 56 2626918 4097024 0 130560 0 247429 99.984 13289 6867 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 19:17:47] CVMFS is ok
[2025-10-12 19:17:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 19:17:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 19:17:47] Further information can be found at the LHC@home message board.
[2025-10-12 19:17:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 19:17:47] Checking for apptainer binary...
[2025-10-12 19:17:47] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 19:17:47] apptainer is not installed, using version from CVMFS
[2025-10-12 19:17:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 19:17:47] pckelar8.cern.ch
[2025-10-12 19:17:47] apptainer works
[2025-10-12 19:17:47] Set ATHENA_PROC_NUMBER=12
[2025-10-12 19:17:47] Set ATHENA_CORE_NUMBER=12
[2025-10-12 19:17:47] Starting ATLAS job with PandaID=6839869915
[2025-10-12 19:17:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:26:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:26:12]  replicas=None
[2025-10-12 20:26:12]  scope=mc23_13p6TeV
[2025-10-12 20:26:12]  status=None
[2025-10-12 20:26:12]  status_code=0
[2025-10-12 20:26:12]  storage_token=
[2025-10-12 20:26:12]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6839869915/log.46676269._076889.job.log.tgz.1
[2025-10-12 20:26:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/c6/log.46676269._076889.job.log.tgz.1
[2025-10-12 20:26:12]  workdir=None
[2025-10-12 20:26:12] ]
[2025-10-12 20:26:12] 2025-10-12 18:25:32,450 | INFO     | transferring file log.46676269._076889.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6839869915/log.46676269._076889.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 20:26:12] 2025-10-12 18:25:32,450 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6839869915/log.46676269._076889.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._076889.job
[2025-10-12 20:26:12] 2025-10-12 18:25:32,465 | INFO     | adding to output.list: log.46676269._076889.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/c6/log.46676269._076889.job.log.tg
[2025-10-12 20:26:12] 2025-10-12 18:25:32,465 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:26:12] 2025-10-12 18:25:32,465 | INFO     | summary of transferred files:
[2025-10-12 20:26:12] 2025-10-12 18:25:32,466 | INFO     |  -- lfn=log.46676269._076889.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:26:12] 2025-10-12 18:25:32,466 | INFO     | stage-out finished correctly
[2025-10-12 20:26:12] 2025-10-12 18:25:32,874 | INFO     | time since job start (4057s) is within the limit (172800.0s)
[2025-10-12 20:26:12] 2025-10-12 18:25:33,071 | INFO     | monitor loop #309: job 0:6839869915 is in state 'finished'
[2025-10-12 20:26:12] 2025-10-12 18:25:33,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:26:12] 2025-10-12 18:25:33,779 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:26:12] 2025-10-12 18:25:34,559 | INFO     | job 6839869915 has state=finished
[2025-10-12 20:26:12] 2025-10-12 18:25:34,560 | INFO     | preparing for final server update for job 6839869915 in state='finished'
[2025-10-12 20:26:12] 2025-10-12 18:25:34,560 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:26:12] 2025-10-12 18:25:34,560 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:26:12] 2025-10-12 18:25:34,560 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:26:12] 2025-10-12 18:25:34,560 | INFO     | job 6839869915 has finished - writing final server update
[2025-10-12 20:26:12] 2025-10-12 18:25:34,561 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:26:12] 2025-10-12 18:25:34,562 | INFO     | executing command: lscpu
[2025-10-12 20:26:12] 2025-10-12 18:25:34,582 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:26:12] 2025-10-12 18:25:34,880 | INFO     | time since job start (4059s) is within the limit (172800.0s)
[2025-10-12 20:26:12] 2025-10-12 18:25:35,574 | INFO     | monitor loop #310: job 0:6839869915 is in state 'finished'
[2025-10-12 20:26:12] 2025-10-12 18:25:35,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:26:12] 2025-10-12 18:25:36,885 | INFO     | time since job start (4061s) is within the limit (172800.0s)
[2025-10-12 20:26:12] 2025-10-12 18:25:38,077 | INFO     | monitor loop #311: job 0:6839869915 is in state 'finished'
[2025-10-12 20:26:12] 2025-10-12 18:25:38,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:26:12] 2025-10-12 18:25:38,890 | INFO     | time since job start (4063s) is within the limit (172800.0s)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,149 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 20:26:12] 2025-10-12 18:25:39,151 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2391.47775
[2025-10-12 20:26:12] 2025-10-12 18:25:39,152 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839869915/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,153 | INFO     | extracted standard info from prmon json
[2025-10-12 20:26:12] 2025-10-12 18:25:39,153 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:26:12] 2025-10-12 18:25:39,153 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:26:12] 2025-10-12 18:25:39,153 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:26:12] 2025-10-12 18:25:39,154 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:26:12] 2025-10-12 18:25:39,155 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:26:12] 2025-10-12 18:25:39,155 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 20:26:12] 2025-10-12 18:25:39,155 | INFO     | sum of deviations: -10032187825.499998
[2025-10-12 20:26:12] 2025-10-12 18:25:39,155 | INFO     | mean x: 1760291603.5
[2025-10-12 20:26:12] 2025-10-12 18:25:39,155 | INFO     | mean y: 2889076.816666667
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | -- intersect: 263738485761.38303
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | intersect: 263738485761.38303
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | chi2: 0.08427645518770391
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | -- intersect: 263738485761.38303
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | current memory leak: -149.82 B/s (using 60 data points, chi2=0.08)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | could have reported an average CPU frequency of 2532 MHz (6 samples)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | ..............................
[2025-10-12 20:26:12] 2025-10-12 18:25:39,156 | INFO     | . Timing measurements:
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . get job = 0 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . initial setup = 1 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . payload setup = 6 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . stage-in = 0 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . payload execution = 4032 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . stage-out = 0 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | . log creation = 0 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,157 | INFO     | ..............................
[2025-10-12 20:26:12] 2025-10-12 18:25:39,223 | INFO     | 
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | job summary report
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | --------------------------------------------------
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | PanDA job id: 6839869915
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | task id: 46676269
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | errors: (none)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | pilot state: finished 
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | transexitcode: 0
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | exeerrorcode: 0
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | exeerrordiag: 
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | exitcode: 0
[2025-10-12 20:26:12] 2025-10-12 18:25:39,224 | INFO     | exitmsg: OK
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | cpuconsumptiontime: 43815 s
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | nevents: 400
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | neventsw: 0
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | pid: 670186
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | pgrp: 670186
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | corecount: 12
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | event service: False
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 4042: 2375093, 4043: 2384091, 4045: 2384147, 4050: 2384469}
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | --------------------------------------------------
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | 
[2025-10-12 20:26:12] 2025-10-12 18:25:39,225 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 20:26:12] 2025-10-12 18:25:39,242 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,242 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,242 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,242 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,242 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,243 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,244 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,244 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,244 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,244 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:26:12] 2025-10-12 18:25:39,244 | INFO     | job 6839869915 has completed (purged errors)
[2025-10-12 20:26:12] 2025-10-12 18:25:39,244 | INFO     | overall cleanup function is called
[2025-10-12 20:26:12] 2025-10-12 18:25:40,251 | INFO     | --- collectZombieJob: --- 10, [670186]
[2025-10-12 20:26:12] 2025-10-12 18:25:40,252 | INFO     | zombie collector waiting for pid 670186
[2025-10-12 20:26:12] 2025-10-12 18:25:40,252 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:26:12] 2025-10-12 18:25:40,252 | INFO     | collected zombie processes
[2025-10-12 20:26:12] 2025-10-12 18:25:40,252 | INFO     | will attempt to kill all subprocesses of pid=670186
[2025-10-12 20:26:12] 2025-10-12 18:25:40,326 | INFO     | process IDs to be killed: [670186] (in reverse order)
[2025-10-12 20:26:12] 2025-10-12 18:25:40,363 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:26:12] 2025-10-12 18:25:40,363 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:26:12] 2025-10-12 18:25:40,365 | INFO     | did not find any defunct processes belonging to 670186
[2025-10-12 20:26:12] 2025-10-12 18:25:40,367 | INFO     | did not find any defunct processes belonging to 670186
[2025-10-12 20:26:12] 2025-10-12 18:25:40,367 | INFO     | ready for new job
[2025-10-12 20:26:12] 2025-10-12 18:25:40,368 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:26:12] 2025-10-12 18:25:40,369 | INFO     | ***************************************
[2025-10-12 20:26:12] 2025-10-12 18:25:40,369 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:26:12] 2025-10-12 18:25:40,369 | INFO     | ***************************************
[2025-10-12 20:26:12] 2025-10-12 18:25:40,369 | INFO     | 
[2025-10-12 20:26:12] 2025-10-12 18:25:40,369 | INFO     | architecture information:
[2025-10-12 20:26:12] 2025-10-12 18:25:40,370 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:26:12] 2025-10-12 18:25:40,381 | INFO     | cat /etc/os-release:
[2025-10-12 20:26:12] NAME="CentOS Linux"
[2025-10-12 20:26:12] VERSION="7 (Core)"
[2025-10-12 20:26:12] ID="centos"
[2025-10-12 20:26:12] ID_LIKE="rhel fedora"
[2025-10-12 20:26:12] VERSION_ID="7"
[2025-10-12 20:26:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:26:12] ANSI_COLOR="0;31"
[2025-10-12 20:26:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:26:12] HOME_URL="https://www.centos.org/"
[2025-10-12 20:26:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:26:12] 
[2025-10-12 20:26:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:26:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:26:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:26:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:26:12] 
[2025-10-12 20:26:12] 2025-10-12 18:25:40,381 | INFO     | ***************************************
[2025-10-12 20:26:12] 2025-10-12 18:25:40,884 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 20:26:12] 2025-10-12 18:25:40,897 | INFO     | sufficient remaining disk space (1716527300608 B)
[2025-10-12 20:26:12] 2025-10-12 18:25:40,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:26:12] 2025-10-12 18:25:40,897 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:26:12] 2025-10-12 18:25:40,897 | INFO     | update_server=False
[2025-10-12 20:26:12] 2025-10-12 18:25:40,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:26:12] 2025-10-12 18:25:40,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:26:12] 2025-10-12 18:25:40,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:26:12] 2025-10-12 18:25:41,148 | INFO     | all data control threads have been joined
[2025-10-12 20:26:12] 2025-10-12 18:25:41,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:26:12] 2025-10-12 18:25:41,585 | INFO     | aborting loop
[2025-10-12 20:26:12] 2025-10-12 18:25:41,842 | INFO     | all payload control threads have been joined
[2025-10-12 20:26:12] 2025-10-12 18:25:41,903 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:41,903 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,153 | INFO     | [data] control thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,354 | INFO     | [job] validate thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,522 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,547 | INFO     | all job control threads have been joined
[2025-10-12 20:26:12] 2025-10-12 18:25:42,549 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,590 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,643 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,778 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,847 | INFO     | [payload] control thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:42,903 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:43,137 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:43,422 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:43,552 | INFO     | [job] control thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:44,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:26:12] 2025-10-12 18:25:48,355 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:25:51,163 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:26:12] 2025-10-12 18:25:52,168 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:26:12] 2025-10-12 18:26:01,098 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:26:12] 2025-10-12 18:26:02,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140186709903168)>', '<ExcThread(monitor, started 140186021246720)>']
[2025-10-12 20:26:12] 2025-10-12 18:26:07,181 | INFO     | all workflow threads have been joined
[2025-10-12 20:26:12] 2025-10-12 18:26:07,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:26:12] 2025-10-12 18:26:07,181 | INFO     | traces error code: 0
[2025-10-12 20:26:12] 2025-10-12 18:26:07,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:26:12] 2025-10-12 18:26:12,068 | INFO     | PID=662897 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 20:26:12] 2025-10-12 18:26:12,069 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:26:12] 2025-10-12 18:26:12,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:26:12] 2025-10-12 18:26:12,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:26:12] 2025-10-12 18:26:12,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:26:12] 2025-10-12 18:26:12,069 | INFO     | [monitor] control thread has ended
[2025-10-12 20:26:12] 2025-10-12 18:26:12,138 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:26:12] 2025-10-12 18:26:12,141 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:26:12] 2025-10-12 18:26:12,143 [wrapper] pilotpid: 662897
[2025-10-12 20:26:12] 2025-10-12 18:26:12,146 [wrapper] Pilot exit status: 0
[2025-10-12 20:26:12] 2025-10-12 18:26:12,154 [wrapper] pandaids: 6839869915
[2025-10-12 20:26:12] 2025-10-12 18:26:12,174 [wrapper] cleanup supervisor_pilot  682496 662898
[2025-10-12 20:26:12] 2025-10-12 18:26:12,176 [wrapper] Test setup, not cleaning
[2025-10-12 20:26:12] 2025-10-12 18:26:12,179 [wrapper] apfmon messages muted
[2025-10-12 20:26:12] 2025-10-12 18:26:12,180 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:26:12] 2025-10-12 18:26:12,182 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:26:12]  *** Error codes and diagnostics ***
[2025-10-12 20:26:12]     "exeErrorCode": 0,
[2025-10-12 20:26:12]     "exeErrorDiag": "",
[2025-10-12 20:26:12]     "pilotErrorCode": 0,
[2025-10-12 20:26:12]     "pilotErrorDiag": "",
[2025-10-12 20:26:12]  *** Listing of results directory ***
[2025-10-12 20:26:12] total 409304
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:57 pilot3.tar.gz
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:11 queuedata.json
[2025-10-12 20:26:12] -rwx------ 1 boinc boinc     36292 Oct 12 13:12 runpilot2-wrapper.sh
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc       100 Oct 12 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:26:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 19:17 run_atlas
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc       105 Oct 12 19:17 job.xml
[2025-10-12 20:26:12] -rw-r--r-- 2 boinc boinc 223169534 Oct 12 19:17 EVNT.46676267._003667.pool.root.1
[2025-10-12 20:26:12] -rw-r--r-- 2 boinc boinc    569684 Oct 12 19:17 input.tar.gz
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc      6251 Oct 12 19:17 init_data.xml
[2025-10-12 20:26:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:17 start_atlas.sh
[2025-10-12 20:26:12] drwxrwx--x 2 boinc boinc      4096 Oct 12 19:17 shared
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc         0 Oct 12 19:17 boinc_lockfile
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc      2550 Oct 12 19:17 pandaJob.out
[2025-10-12 20:26:12] -rw------- 1 boinc boinc    975528 Oct 12 19:17 agis_schedconf.cvmfs.json
[2025-10-12 20:26:12] -rw------- 1 boinc boinc   1560580 Oct 12 19:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:26:12] drwx------ 5 boinc boinc      4096 Oct 12 19:17 pilot3
[2025-10-12 20:26:12] -rw------- 1 boinc boinc 190068360 Oct 12 20:25 HITS.46676269._076889.pool.root.1
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:25 boinc_task_state.xml
[2025-10-12 20:26:12] -rw------- 1 boinc boinc        95 Oct 12 20:25 pilot_heartbeat.json
[2025-10-12 20:26:12] -rw------- 1 boinc boinc      1020 Oct 12 20:25 memory_monitor_summary.json
[2025-10-12 20:26:12] -rw------- 1 boinc boinc    393303 Oct 12 20:25 log.46676269._076889.job.log.tgz.1
[2025-10-12 20:26:12] -rw------- 1 boinc boinc      7796 Oct 12 20:25 heartbeat.json
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:26 boinc_mmap_file
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:26 wrapper_checkpoint.txt
[2025-10-12 20:26:12] -rw------- 1 boinc boinc       746 Oct 12 20:26 pilotlog.txt
[2025-10-12 20:26:12] -rw------- 1 boinc boinc    601469 Oct 12 20:26 log.46676269._076889.job.log.1
[2025-10-12 20:26:12] -rw------- 1 boinc boinc       357 Oct 12 20:26 output.list
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:26 runtime_log
[2025-10-12 20:26:12] -rw------- 1 boinc boinc   1013760 Oct 12 20:26 result.tar.gz
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc      8727 Oct 12 20:26 runtime_log.err
[2025-10-12 20:26:12] -rw------- 1 boinc boinc       657 Oct 12 20:26 CjOKDm9A9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZbjNDmDrh9Kn.diag
[2025-10-12 20:26:12] -rw-r--r-- 1 boinc boinc     21922 Oct 12 20:26 stderr.txt
[2025-10-12 20:26:12] HITS file was successfully produced:
[2025-10-12 20:26:12] -rw------- 1 boinc boinc 190068360 Oct 12 20:25 shared/HITS.pool.root.1
[2025-10-12 20:26:12]  *** Contents of shared directory: ***
[2025-10-12 20:26:12] total 405128
[2025-10-12 20:26:12] -rw-r--r-- 2 boinc boinc 223169534 Oct 12 19:17 ATLAS.root_0
[2025-10-12 20:26:12] -rw-r--r-- 2 boinc boinc    569684 Oct 12 19:17 input.tar.gz
[2025-10-12 20:26:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 19:17 start_atlas.sh
[2025-10-12 20:26:12] -rw------- 1 boinc boinc 190068360 Oct 12 20:25 HITS.pool.root.1
[2025-10-12 20:26:12] -rw------- 1 boinc boinc   1013760 Oct 12 20:26 result.tar.gz
20:26:13 (659147): run_atlas exited; CPU time 43820.085798
20:26:13 (659147): called boinc_finish(0)

</stderr_txt>
]]>

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